data_5IEN # _model_server_result.job_id RTUxGwa-ylkr0z8RO97COQ _model_server_result.datetime_utc '2024-12-24 02:17:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ien # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 5IEN # _exptl.entry_id 5IEN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IEN _cell.length_a 48.831 _cell.length_b 60.415 _cell.length_c 93.942 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IEN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 5IEN _atom_sites.fract_transf_matrix[1][1] 0.020479 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016552 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010645 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 VDY A 1 201 1 VDY VDY . D 3 GOL A 1 202 1 GOL GOL . E 2 VDY B 1 201 2 VDY VDY . F 4 HOH A 1 301 22 HOH HOH . F 4 HOH A 2 302 13 HOH HOH . F 4 HOH A 3 303 57 HOH HOH . F 4 HOH A 4 304 28 HOH HOH . F 4 HOH A 5 305 19 HOH HOH . F 4 HOH A 6 306 40 HOH HOH . F 4 HOH A 7 307 76 HOH HOH . F 4 HOH A 8 308 24 HOH HOH . F 4 HOH A 9 309 27 HOH HOH . F 4 HOH A 10 310 74 HOH HOH . F 4 HOH A 11 311 2 HOH HOH . F 4 HOH A 12 312 49 HOH HOH . F 4 HOH A 13 313 17 HOH HOH . F 4 HOH A 14 314 56 HOH HOH . F 4 HOH A 15 315 34 HOH HOH . F 4 HOH A 16 316 80 HOH HOH . F 4 HOH A 17 317 54 HOH HOH . F 4 HOH A 18 318 41 HOH HOH . F 4 HOH A 19 319 84 HOH HOH . F 4 HOH A 20 320 39 HOH HOH . F 4 HOH A 21 321 70 HOH HOH . F 4 HOH A 22 322 3 HOH HOH . F 4 HOH A 23 323 29 HOH HOH . F 4 HOH A 24 324 35 HOH HOH . F 4 HOH A 25 325 33 HOH HOH . F 4 HOH A 26 326 83 HOH HOH . F 4 HOH A 27 327 8 HOH HOH . F 4 HOH A 28 328 61 HOH HOH . F 4 HOH A 29 329 5 HOH HOH . F 4 HOH A 30 330 79 HOH HOH . F 4 HOH A 31 331 51 HOH HOH . F 4 HOH A 32 332 48 HOH HOH . F 4 HOH A 33 333 97 HOH HOH . F 4 HOH A 34 334 36 HOH HOH . F 4 HOH A 35 335 46 HOH HOH . F 4 HOH A 36 336 16 HOH HOH . F 4 HOH A 37 337 103 HOH HOH . F 4 HOH A 38 338 6 HOH HOH . F 4 HOH A 39 339 64 HOH HOH . F 4 HOH A 40 340 72 HOH HOH . F 4 HOH A 41 341 107 HOH HOH . F 4 HOH A 42 342 96 HOH HOH . F 4 HOH A 43 343 58 HOH HOH . F 4 HOH A 44 344 68 HOH HOH . F 4 HOH A 45 345 65 HOH HOH . F 4 HOH A 46 346 53 HOH HOH . F 4 HOH A 47 347 23 HOH HOH . G 4 HOH B 1 301 26 HOH HOH . G 4 HOH B 2 302 4 HOH HOH . G 4 HOH B 3 303 69 HOH HOH . G 4 HOH B 4 304 38 HOH HOH . G 4 HOH B 5 305 90 HOH HOH . G 4 HOH B 6 306 104 HOH HOH . G 4 HOH B 7 307 20 HOH HOH . G 4 HOH B 8 308 32 HOH HOH . G 4 HOH B 9 309 1 HOH HOH . G 4 HOH B 10 310 81 HOH HOH . G 4 HOH B 11 311 12 HOH HOH . G 4 HOH B 12 312 18 HOH HOH . G 4 HOH B 13 313 52 HOH HOH . G 4 HOH B 14 314 37 HOH HOH . G 4 HOH B 15 315 11 HOH HOH . G 4 HOH B 16 316 9 HOH HOH . G 4 HOH B 17 317 93 HOH HOH . G 4 HOH B 18 318 50 HOH HOH . G 4 HOH B 19 319 95 HOH HOH . G 4 HOH B 20 320 10 HOH HOH . G 4 HOH B 21 321 88 HOH HOH . G 4 HOH B 22 322 21 HOH HOH . G 4 HOH B 23 323 15 HOH HOH . G 4 HOH B 24 324 25 HOH HOH . G 4 HOH B 25 325 63 HOH HOH . G 4 HOH B 26 326 60 HOH HOH . G 4 HOH B 27 327 31 HOH HOH . G 4 HOH B 28 328 47 HOH HOH . G 4 HOH B 29 329 7 HOH HOH . G 4 HOH B 30 330 55 HOH HOH . G 4 HOH B 31 331 14 HOH HOH . G 4 HOH B 32 332 71 HOH HOH . G 4 HOH B 33 333 92 HOH HOH . G 4 HOH B 34 334 106 HOH HOH . G 4 HOH B 35 335 98 HOH HOH . G 4 HOH B 36 336 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 15.945 -5.132 -17.809 1 55.84 ? C1 GOL 202 A 1 HETATM 2 O O1 GOL . . . D 3 15.807 -6.228 -16.934 1 64.53 ? O1 GOL 202 A 1 HETATM 3 C C2 GOL . . . D 3 16.416 -3.882 -17.069 1 55.76 ? C2 GOL 202 A 1 HETATM 4 O O2 GOL . . . D 3 15.303 -3.088 -16.722 1 65.4 ? O2 GOL 202 A 1 HETATM 5 C C3 GOL . . . D 3 17.219 -4.229 -15.818 1 60.08 ? C3 GOL 202 A 1 HETATM 6 O O3 GOL . . . D 3 18.416 -4.878 -16.189 1 59.28 ? O3 GOL 202 A 1 HETATM 7 H H11 GOL . . . D 3 14.988 -4.928 -18.289 1 67.01 ? H11 GOL 202 A 1 HETATM 8 H H12 GOL . . . D 3 16.663 -5.381 -18.591 1 67.01 ? H12 GOL 202 A 1 HETATM 9 H HO1 GOL . . . D 3 15.441 -6.993 -17.425 1 77.44 ? HO1 GOL 202 A 1 HETATM 10 H H2 GOL . . . D 3 17.064 -3.317 -17.74 1 66.91 ? H2 GOL 202 A 1 HETATM 11 H HO2 GOL . . . D 3 14.738 -3.577 -16.089 1 78.48 ? HO2 GOL 202 A 1 HETATM 12 H H31 GOL . . . D 3 16.631 -4.881 -15.172 1 72.09 ? H31 GOL 202 A 1 HETATM 13 H H32 GOL . . . D 3 17.45 -3.319 -15.264 1 72.09 ? H32 GOL 202 A 1 HETATM 14 H HO3 GOL . . . D 3 19.039 -4.871 -15.432 1 71.14 ? HO3 GOL 202 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 42 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 465 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #