data_5IEO # _model_server_result.job_id aKVTVlW8ljmI5Gv8j_r5Fg _model_server_result.datetime_utc '2024-12-24 02:34:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ieo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":206}' # _entry.id 5IEO # _exptl.entry_id 5IEO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 400.637 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IEO _cell.length_a 71.132 _cell.length_b 71.132 _cell.length_c 62.119 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IEO _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H44 O2' _chem_comp.formula_weight 400.637 _chem_comp.id VDY _chem_comp.mon_nstd_flag . _chem_comp.name 3-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '25-HYDROXYVITAMIN D3' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C3 VDY sing 372 n n O1 HO1 VDY sing 373 n n O2 C25 VDY sing 374 n n O2 HO2 VDY sing 375 n n C1 C2 VDY sing 376 n n C1 C10 VDY sing 377 n n C1 H11 VDY sing 378 n n C1 H12 VDY sing 379 n n C2 C3 VDY sing 380 n n C2 H21 VDY sing 381 n n C2 H22 VDY sing 382 n n C3 C4 VDY sing 383 n n C3 H31 VDY sing 384 n n C4 C5 VDY sing 385 n n C4 H41 VDY sing 386 n n C4 H42 VDY sing 387 n n C5 C6 VDY doub 388 z n C5 C10 VDY sing 389 n n C6 C7 VDY sing 390 n n C6 H61 VDY sing 391 n n C7 C8 VDY doub 392 e n C7 H71 VDY sing 393 n n C8 C9 VDY sing 394 n n C8 C14 VDY sing 395 n n C9 C11 VDY sing 396 n n C9 H91 VDY sing 397 n n C9 H92 VDY sing 398 n n C10 C19 VDY doub 399 n n C11 C12 VDY sing 400 n n C11 H111 VDY sing 401 n n C11 H112 VDY sing 402 n n C12 C13 VDY sing 403 n n C12 H121 VDY sing 404 n n C12 H122 VDY sing 405 n n C13 C14 VDY sing 406 n n C13 C17 VDY sing 407 n n C13 C18 VDY sing 408 n n C14 C15 VDY sing 409 n n C14 H141 VDY sing 410 n n C15 C16 VDY sing 411 n n C15 H151 VDY sing 412 n n C15 H152 VDY sing 413 n n C16 C17 VDY sing 414 n n C16 H161 VDY sing 415 n n C16 H162 VDY sing 416 n n C17 C20 VDY sing 417 n n C17 H171 VDY sing 418 n n C18 H181 VDY sing 419 n n C18 H182 VDY sing 420 n n C18 H183 VDY sing 421 n n C19 H191 VDY sing 422 n n C19 H192 VDY sing 423 n n C20 C21 VDY sing 424 n n C20 C22 VDY sing 425 n n C20 H201 VDY sing 426 n n C21 H211 VDY sing 427 n n C21 H212 VDY sing 428 n n C21 H213 VDY sing 429 n n C22 C23 VDY sing 430 n n C22 H221 VDY sing 431 n n C22 H222 VDY sing 432 n n C23 C24 VDY sing 433 n n C23 H231 VDY sing 434 n n C23 H232 VDY sing 435 n n C24 C25 VDY sing 436 n n C24 H241 VDY sing 437 n n C24 H242 VDY sing 438 n n C25 C26 VDY sing 439 n n C25 C27 VDY sing 440 n n C26 H261 VDY sing 441 n n C26 H262 VDY sing 442 n n C26 H263 VDY sing 443 n n C27 H271 VDY sing 444 n n C27 H272 VDY sing 445 n n C27 H273 VDY sing 446 n n # _atom_sites.entry_id 5IEO _atom_sites.fract_transf_matrix[1][1] 0.014058 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014058 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016098 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 201 1 EDO EDO . C 2 EDO A 1 202 2 EDO EDO . D 2 EDO A 1 203 3 EDO EDO . E 2 EDO A 1 204 4 EDO EDO . F 2 EDO A 1 205 5 EDO EDO . G 3 VDY A 1 206 1 VDY VDY . H 4 HOH A 1 301 99 HOH HOH . H 4 HOH A 2 302 35 HOH HOH . H 4 HOH A 3 303 39 HOH HOH . H 4 HOH A 4 304 31 HOH HOH . H 4 HOH A 5 305 60 HOH HOH . H 4 HOH A 6 306 38 HOH HOH . H 4 HOH A 7 307 24 HOH HOH . H 4 HOH A 8 308 84 HOH HOH . H 4 HOH A 9 309 50 HOH HOH . H 4 HOH A 10 310 66 HOH HOH . H 4 HOH A 11 311 9 HOH HOH . H 4 HOH A 12 312 28 HOH HOH . H 4 HOH A 13 313 20 HOH HOH . H 4 HOH A 14 314 34 HOH HOH . H 4 HOH A 15 315 1 HOH HOH . H 4 HOH A 16 316 15 HOH HOH . H 4 HOH A 17 317 11 HOH HOH . H 4 HOH A 18 318 30 HOH HOH . H 4 HOH A 19 319 23 HOH HOH . H 4 HOH A 20 320 53 HOH HOH . H 4 HOH A 21 321 85 HOH HOH . H 4 HOH A 22 322 7 HOH HOH . H 4 HOH A 23 323 32 HOH HOH . H 4 HOH A 24 324 4 HOH HOH . H 4 HOH A 25 325 12 HOH HOH . H 4 HOH A 26 326 13 HOH HOH . H 4 HOH A 27 327 48 HOH HOH . H 4 HOH A 28 328 3 HOH HOH . H 4 HOH A 29 329 41 HOH HOH . H 4 HOH A 30 330 47 HOH HOH . H 4 HOH A 31 331 6 HOH HOH . H 4 HOH A 32 332 74 HOH HOH . H 4 HOH A 33 333 67 HOH HOH . H 4 HOH A 34 334 56 HOH HOH . H 4 HOH A 35 335 16 HOH HOH . H 4 HOH A 36 336 19 HOH HOH . H 4 HOH A 37 337 27 HOH HOH . H 4 HOH A 38 338 18 HOH HOH . H 4 HOH A 39 339 33 HOH HOH . H 4 HOH A 40 340 5 HOH HOH . H 4 HOH A 41 341 8 HOH HOH . H 4 HOH A 42 342 100 HOH HOH . H 4 HOH A 43 343 45 HOH HOH . H 4 HOH A 44 344 22 HOH HOH . H 4 HOH A 45 345 10 HOH HOH . H 4 HOH A 46 346 29 HOH HOH . H 4 HOH A 47 347 2 HOH HOH . H 4 HOH A 48 348 70 HOH HOH . H 4 HOH A 49 349 64 HOH HOH . H 4 HOH A 50 350 52 HOH HOH . H 4 HOH A 51 351 21 HOH HOH . H 4 HOH A 52 352 49 HOH HOH . H 4 HOH A 53 353 40 HOH HOH . H 4 HOH A 54 354 14 HOH HOH . H 4 HOH A 55 355 69 HOH HOH . H 4 HOH A 56 356 62 HOH HOH . H 4 HOH A 57 357 80 HOH HOH . H 4 HOH A 58 358 71 HOH HOH . H 4 HOH A 59 359 25 HOH HOH . H 4 HOH A 60 360 68 HOH HOH . H 4 HOH A 61 361 42 HOH HOH . H 4 HOH A 62 362 36 HOH HOH . H 4 HOH A 63 363 26 HOH HOH . H 4 HOH A 64 364 86 HOH HOH . H 4 HOH A 65 365 94 HOH HOH . H 4 HOH A 66 366 63 HOH HOH . H 4 HOH A 67 367 43 HOH HOH . H 4 HOH A 68 368 98 HOH HOH . H 4 HOH A 69 369 37 HOH HOH . H 4 HOH A 70 370 81 HOH HOH . H 4 HOH A 71 371 76 HOH HOH . H 4 HOH A 72 372 88 HOH HOH . H 4 HOH A 73 373 65 HOH HOH . H 4 HOH A 74 374 55 HOH HOH . H 4 HOH A 75 375 77 HOH HOH . H 4 HOH A 76 376 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 VDY . . . G 3 17.367 59.694 -6.542 1 20 ? O1 VDY 206 A 1 HETATM 2 O O2 VDY . . . G 3 15.7 72.823 3.368 1 20 ? O2 VDY 206 A 1 HETATM 3 C C1 VDY . . . G 3 19.775 62.334 -5.608 1 20 ? C1 VDY 206 A 1 HETATM 4 C C2 VDY . . . G 3 19.173 61.245 -6.469 1 20 ? C2 VDY 206 A 1 HETATM 5 C C3 VDY . . . G 3 17.802 60.901 -5.932 1 20 ? C3 VDY 206 A 1 HETATM 6 C C4 VDY . . . G 3 16.9 62.093 -6.236 1 20 ? C4 VDY 206 A 1 HETATM 7 C C5 VDY . . . G 3 17.43 63.257 -5.451 1 20 ? C5 VDY 206 A 1 HETATM 8 C C6 VDY . . . G 3 16.716 63.872 -4.511 1 20 ? C6 VDY 206 A 1 HETATM 9 C C7 VDY . . . G 3 17.188 65.106 -3.892 1 20 ? C7 VDY 206 A 1 HETATM 10 C C8 VDY . . . G 3 16.356 65.932 -3.287 1 20 ? C8 VDY 206 A 1 HETATM 11 C C9 VDY . . . G 3 14.893 65.79 -3.456 1 20 ? C9 VDY 206 A 1 HETATM 12 C C10 VDY . . . G 3 18.856 63.527 -5.623 1 20 ? C10 VDY 206 A 1 HETATM 13 C C11 VDY . . . G 3 14.163 66.357 -2.276 1 20 ? C11 VDY 206 A 1 HETATM 14 C C12 VDY . . . G 3 14.613 67.77 -1.947 1 20 ? C12 VDY 206 A 1 HETATM 15 C C13 VDY . . . G 3 16.061 67.786 -1.656 1 20 ? C13 VDY 206 A 1 HETATM 16 C C14 VDY . . . G 3 16.767 67.32 -2.956 1 20 ? C14 VDY 206 A 1 HETATM 17 C C15 VDY . . . G 3 18.234 67.508 -2.605 1 20 ? C15 VDY 206 A 1 HETATM 18 C C16 VDY . . . G 3 18.241 68.727 -1.659 1 20 ? C16 VDY 206 A 1 HETATM 19 C C17 VDY . . . G 3 16.77 69.094 -1.429 1 20 ? C17 VDY 206 A 1 HETATM 20 C C18 VDY . . . G 3 16.381 66.831 -0.54 1 20 ? C18 VDY 206 A 1 HETATM 21 C C19 VDY . . . G 3 19.273 64.628 -6.195 1 20 ? C19 VDY 206 A 1 HETATM 22 C C20 VDY . . . G 3 16.588 69.73 -0.069 1 20 ? C20 VDY 206 A 1 HETATM 23 C C21 VDY . . . G 3 15.137 69.956 0.13 1 20 ? C21 VDY 206 A 1 HETATM 24 C C22 VDY . . . G 3 17.305 71.06 -0.055 1 20 ? C22 VDY 206 A 1 HETATM 25 C C23 VDY . . . G 3 16.899 72.032 1.033 1 20 ? C23 VDY 206 A 1 HETATM 26 C C24 VDY . . . G 3 17.534 71.678 2.351 1 20 ? C24 VDY 206 A 1 HETATM 27 C C25 VDY . . . G 3 17.055 72.587 3.47 1 20 ? C25 VDY 206 A 1 HETATM 28 C C26 VDY . . . G 3 17.372 71.888 4.763 1 20 ? C26 VDY 206 A 1 HETATM 29 C C27 VDY . . . G 3 17.759 73.915 3.423 1 20 ? C27 VDY 206 A 1 HETATM 30 H HO1 VDY . . . G 3 16.842 59.918 -7.322 1 20 ? HO1 VDY 206 A 1 HETATM 31 H HO2 VDY . . . G 3 15.394 73.176 4.197 1 20 ? HO2 VDY 206 A 1 HETATM 32 H H11 VDY . . . G 3 20.744 62.62 -6.007 1 20 ? H11 VDY 206 A 1 HETATM 33 H H12 VDY . . . G 3 19.891 61.973 -4.591 1 20 ? H12 VDY 206 A 1 HETATM 34 H H21 VDY . . . G 3 19.816 60.37 -6.441 1 20 ? H21 VDY 206 A 1 HETATM 35 H H22 VDY . . . G 3 19.079 61.603 -7.491 1 20 ? H22 VDY 206 A 1 HETATM 36 H H31 VDY . . . G 3 17.86 60.763 -4.856 1 20 ? H31 VDY 206 A 1 HETATM 37 H H41 VDY . . . G 3 15.885 61.868 -5.924 1 20 ? H41 VDY 206 A 1 HETATM 38 H H42 VDY . . . G 3 16.924 62.319 -7.299 1 20 ? H42 VDY 206 A 1 HETATM 39 H H61 VDY . . . G 3 15.753 63.482 -4.243 1 20 ? H61 VDY 206 A 1 HETATM 40 H H71 VDY . . . G 3 18.191 65.435 -4.089 1 20 ? H71 VDY 206 A 1 HETATM 41 H H91 VDY . . . G 3 14.594 66.315 -4.353 1 20 ? H91 VDY 206 A 1 HETATM 42 H H92 VDY . . . G 3 14.652 64.739 -3.555 1 20 ? H92 VDY 206 A 1 HETATM 43 H H111 VDY . . . G 3 13.1 66.359 -2.493 1 20 ? H111 VDY 206 A 1 HETATM 44 H H112 VDY . . . G 3 14.341 65.721 -1.419 1 20 ? H112 VDY 206 A 1 HETATM 45 H H121 VDY . . . G 3 14.421 68.413 -2.798 1 20 ? H121 VDY 206 A 1 HETATM 46 H H122 VDY . . . G 3 14.076 68.128 -1.079 1 20 ? H122 VDY 206 A 1 HETATM 47 H H141 VDY . . . G 3 16.495 67.972 -3.775 1 20 ? H141 VDY 206 A 1 HETATM 48 H H151 VDY . . . G 3 18.807 67.72 -3.498 1 20 ? H151 VDY 206 A 1 HETATM 49 H H152 VDY . . . G 3 18.618 66.632 -2.107 1 20 ? H152 VDY 206 A 1 HETATM 50 H H161 VDY . . . G 3 18.739 69.555 -2.143 1 20 ? H161 VDY 206 A 1 HETATM 51 H H162 VDY . . . G 3 18.726 68.499 -0.72 1 20 ? H162 VDY 206 A 1 HETATM 52 H H171 VDY . . . G 3 16.454 69.804 -2.182 1 20 ? H171 VDY 206 A 1 HETATM 53 H H181 VDY . . . G 3 16.014 65.845 -0.78 1 20 ? H181 VDY 206 A 1 HETATM 54 H H182 VDY . . . G 3 17.452 66.787 -0.408 1 20 ? H182 VDY 206 A 1 HETATM 55 H H183 VDY . . . G 3 15.912 67.172 0.375 1 20 ? H183 VDY 206 A 1 HETATM 56 H H191 VDY . . . G 3 18.959 64.86 -7.197 1 20 ? H191 VDY 206 A 1 HETATM 57 H H192 VDY . . . G 3 20.046 65.212 -5.722 1 20 ? H192 VDY 206 A 1 HETATM 58 H H201 VDY . . . G 3 16.969 69.088 0.713 1 20 ? H201 VDY 206 A 1 HETATM 59 H H211 VDY . . . G 3 14.763 70.57 -0.678 1 20 ? H211 VDY 206 A 1 HETATM 60 H H212 VDY . . . G 3 14.623 69.007 0.147 1 20 ? H212 VDY 206 A 1 HETATM 61 H H213 VDY . . . G 3 14.987 70.471 1.071 1 20 ? H213 VDY 206 A 1 HETATM 62 H H221 VDY . . . G 3 18.366 70.864 0.038 1 20 ? H221 VDY 206 A 1 HETATM 63 H H222 VDY . . . G 3 17.129 71.543 -1.007 1 20 ? H222 VDY 206 A 1 HETATM 64 H H231 VDY . . . G 3 17.222 73.029 0.758 1 20 ? H231 VDY 206 A 1 HETATM 65 H H232 VDY . . . G 3 15.823 72.054 1.143 1 20 ? H232 VDY 206 A 1 HETATM 66 H H241 VDY . . . G 3 17.285 70.656 2.6 1 20 ? H241 VDY 206 A 1 HETATM 67 H H242 VDY . . . G 3 18.606 71.761 2.252 1 20 ? H242 VDY 206 A 1 HETATM 68 H H261 VDY . . . G 3 17.067 72.506 5.596 1 20 ? H261 VDY 206 A 1 HETATM 69 H H262 VDY . . . G 3 16.838 70.948 4.8 1 20 ? H262 VDY 206 A 1 HETATM 70 H H263 VDY . . . G 3 18.439 71.709 4.818 1 20 ? H263 VDY 206 A 1 HETATM 71 H H271 VDY . . . G 3 17.688 74.383 4.395 1 20 ? H271 VDY 206 A 1 HETATM 72 H H272 VDY . . . G 3 18.803 73.769 3.174 1 20 ? H272 VDY 206 A 1 HETATM 73 H H273 VDY . . . G 3 17.291 74.558 2.686 1 20 ? H273 VDY 206 A 1 # _model_server_stats.io_time_ms 91 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 73 #