data_5IES # _model_server_result.job_id sBEH4g_-3UV1VwDkp7ZNKQ _model_server_result.datetime_utc '2024-12-11 22:27:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ies # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1002}' # _entry.id 5IES # _exptl.entry_id 5IES _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IES _cell.length_a 102.553 _cell.length_b 138.604 _cell.length_c 147.896 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IES _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 145 H CYS 140 1_555 A SG CYS 201 H CYS 196 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 A SG CYS 145 H CYS 140 1_555 A SG CYS 201 H CYS 196 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 B SG CYS 23 L CYS 23 1_555 B SG CYS 94 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf5 B SG CYS 136 L CYS 134 1_555 B SG CYS 196 L CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 B SG CYS 136 L CYS 134 1_555 B SG CYS 196 L CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.054 ? disulf ? disulf7 C SG CYS 7 C CYS 7 1_555 C SG CYS 158 C CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf8 C SG CYS 15 C CYS 15 1_555 C SG CYS 151 C CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf9 C SG CYS 51 C CYS 51 1_555 C SG CYS 88 C CYS 88 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.042 ? disulf ? disulf10 C SG CYS 99 C CYS 99 1_555 C SG CYS 105 C CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? covale ? covale1 C ND2 ASN 18 C ASN 18 1_555 G C1 NAG . C NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 C ND2 ASN 65 C ASN 65 1_555 H C1 NAG . C NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 250 n n C1 O1 NAG sing 251 n n C1 O5 NAG sing 252 n n C1 H1 NAG sing 253 n n C2 C3 NAG sing 254 n n C2 N2 NAG sing 255 n n C2 H2 NAG sing 256 n n C3 C4 NAG sing 257 n n C3 O3 NAG sing 258 n n C3 H3 NAG sing 259 n n C4 C5 NAG sing 260 n n C4 O4 NAG sing 261 n n C4 H4 NAG sing 262 n n C5 C6 NAG sing 263 n n C5 O5 NAG sing 264 n n C5 H5 NAG sing 265 n n C6 O6 NAG sing 266 n n C6 H61 NAG sing 267 n n C6 H62 NAG sing 268 n n C7 C8 NAG sing 269 n n C7 N2 NAG sing 270 n n C7 O7 NAG doub 271 n n C8 H81 NAG sing 272 n n C8 H82 NAG sing 273 n n C8 H83 NAG sing 274 n n N2 HN2 NAG sing 275 n n O1 HO1 NAG sing 276 n n O3 HO3 NAG sing 277 n n O4 HO4 NAG sing 278 n n O6 HO6 NAG sing 279 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5IES _atom_sites.fract_transf_matrix[1][1] 0.009751 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007215 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006762 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL H 1 301 4 GOL GOL . E 4 GOL L 1 301 1 GOL GOL . F 4 GOL L 1 302 2 GOL GOL . G 5 NAG C 1 1001 1001 NAG NAG . H 5 NAG C 1 1002 1002 NAG NAG . I 6 HOH H 1 401 76 HOH HOH . I 6 HOH H 2 402 15 HOH HOH . I 6 HOH H 3 403 156 HOH HOH . I 6 HOH H 4 404 107 HOH HOH . I 6 HOH H 5 405 3 HOH HOH . I 6 HOH H 6 406 93 HOH HOH . I 6 HOH H 7 407 138 HOH HOH . I 6 HOH H 8 408 130 HOH HOH . I 6 HOH H 9 409 96 HOH HOH . I 6 HOH H 10 410 185 HOH HOH . I 6 HOH H 11 411 25 HOH HOH . I 6 HOH H 12 412 77 HOH HOH . I 6 HOH H 13 413 73 HOH HOH . I 6 HOH H 14 414 184 HOH HOH . I 6 HOH H 15 415 44 HOH HOH . I 6 HOH H 16 416 139 HOH HOH . I 6 HOH H 17 417 49 HOH HOH . I 6 HOH H 18 418 65 HOH HOH . I 6 HOH H 19 419 112 HOH HOH . I 6 HOH H 20 420 69 HOH HOH . I 6 HOH H 21 421 19 HOH HOH . I 6 HOH H 22 422 43 HOH HOH . I 6 HOH H 23 423 35 HOH HOH . I 6 HOH H 24 424 55 HOH HOH . I 6 HOH H 25 425 32 HOH HOH . I 6 HOH H 26 426 121 HOH HOH . I 6 HOH H 27 427 128 HOH HOH . I 6 HOH H 28 428 109 HOH HOH . I 6 HOH H 29 429 66 HOH HOH . I 6 HOH H 30 430 30 HOH HOH . I 6 HOH H 31 431 147 HOH HOH . I 6 HOH H 32 432 20 HOH HOH . I 6 HOH H 33 433 17 HOH HOH . I 6 HOH H 34 434 92 HOH HOH . I 6 HOH H 35 435 80 HOH HOH . I 6 HOH H 36 436 153 HOH HOH . I 6 HOH H 37 437 150 HOH HOH . I 6 HOH H 38 438 104 HOH HOH . I 6 HOH H 39 439 85 HOH HOH . I 6 HOH H 40 440 158 HOH HOH . I 6 HOH H 41 441 97 HOH HOH . I 6 HOH H 42 442 46 HOH HOH . I 6 HOH H 43 443 22 HOH HOH . I 6 HOH H 44 444 113 HOH HOH . I 6 HOH H 45 445 28 HOH HOH . I 6 HOH H 46 446 126 HOH HOH . I 6 HOH H 47 447 174 HOH HOH . I 6 HOH H 48 448 21 HOH HOH . I 6 HOH H 49 449 89 HOH HOH . I 6 HOH H 50 450 178 HOH HOH . I 6 HOH H 51 451 4 HOH HOH . I 6 HOH H 52 452 122 HOH HOH . I 6 HOH H 53 453 61 HOH HOH . I 6 HOH H 54 454 18 HOH HOH . I 6 HOH H 55 455 53 HOH HOH . I 6 HOH H 56 456 177 HOH HOH . I 6 HOH H 57 457 149 HOH HOH . I 6 HOH H 58 458 101 HOH HOH . I 6 HOH H 59 459 82 HOH HOH . I 6 HOH H 60 460 166 HOH HOH . I 6 HOH H 61 461 160 HOH HOH . I 6 HOH H 62 462 7 HOH HOH . I 6 HOH H 63 463 152 HOH HOH . I 6 HOH H 64 464 157 HOH HOH . I 6 HOH H 65 465 181 HOH HOH . I 6 HOH H 66 466 134 HOH HOH . I 6 HOH H 67 467 81 HOH HOH . I 6 HOH H 68 468 172 HOH HOH . I 6 HOH H 69 469 118 HOH HOH . I 6 HOH H 70 470 187 HOH HOH . I 6 HOH H 71 471 171 HOH HOH . I 6 HOH H 72 472 125 HOH HOH . I 6 HOH H 73 473 164 HOH HOH . I 6 HOH H 74 474 114 HOH HOH . I 6 HOH H 75 475 86 HOH HOH . I 6 HOH H 76 476 132 HOH HOH . I 6 HOH H 77 477 182 HOH HOH . I 6 HOH H 78 478 161 HOH HOH . I 6 HOH H 79 479 133 HOH HOH . I 6 HOH H 80 480 95 HOH HOH . I 6 HOH H 81 481 145 HOH HOH . I 6 HOH H 82 482 186 HOH HOH . I 6 HOH H 83 483 102 HOH HOH . I 6 HOH H 84 484 84 HOH HOH . J 6 HOH L 1 401 115 HOH HOH . J 6 HOH L 2 402 24 HOH HOH . J 6 HOH L 3 403 67 HOH HOH . J 6 HOH L 4 404 72 HOH HOH . J 6 HOH L 5 405 124 HOH HOH . J 6 HOH L 6 406 123 HOH HOH . J 6 HOH L 7 407 144 HOH HOH . J 6 HOH L 8 408 39 HOH HOH . J 6 HOH L 9 409 52 HOH HOH . J 6 HOH L 10 410 137 HOH HOH . J 6 HOH L 11 411 90 HOH HOH . J 6 HOH L 12 412 9 HOH HOH . J 6 HOH L 13 413 6 HOH HOH . J 6 HOH L 14 414 99 HOH HOH . J 6 HOH L 15 415 12 HOH HOH . J 6 HOH L 16 416 173 HOH HOH . J 6 HOH L 17 417 51 HOH HOH . J 6 HOH L 18 418 117 HOH HOH . J 6 HOH L 19 419 71 HOH HOH . J 6 HOH L 20 420 57 HOH HOH . J 6 HOH L 21 421 31 HOH HOH . J 6 HOH L 22 422 63 HOH HOH . J 6 HOH L 23 423 11 HOH HOH . J 6 HOH L 24 424 140 HOH HOH . J 6 HOH L 25 425 167 HOH HOH . J 6 HOH L 26 426 40 HOH HOH . J 6 HOH L 27 427 141 HOH HOH . J 6 HOH L 28 428 60 HOH HOH . J 6 HOH L 29 429 47 HOH HOH . J 6 HOH L 30 430 142 HOH HOH . J 6 HOH L 31 431 36 HOH HOH . J 6 HOH L 32 432 48 HOH HOH . J 6 HOH L 33 433 79 HOH HOH . J 6 HOH L 34 434 33 HOH HOH . J 6 HOH L 35 435 135 HOH HOH . J 6 HOH L 36 436 8 HOH HOH . J 6 HOH L 37 437 68 HOH HOH . J 6 HOH L 38 438 100 HOH HOH . J 6 HOH L 39 439 64 HOH HOH . J 6 HOH L 40 440 27 HOH HOH . J 6 HOH L 41 441 83 HOH HOH . J 6 HOH L 42 442 155 HOH HOH . J 6 HOH L 43 443 131 HOH HOH . J 6 HOH L 44 444 74 HOH HOH . J 6 HOH L 45 445 148 HOH HOH . J 6 HOH L 46 446 2 HOH HOH . J 6 HOH L 47 447 168 HOH HOH . J 6 HOH L 48 448 13 HOH HOH . J 6 HOH L 49 449 70 HOH HOH . J 6 HOH L 50 450 143 HOH HOH . J 6 HOH L 51 451 38 HOH HOH . J 6 HOH L 52 452 175 HOH HOH . J 6 HOH L 53 453 1 HOH HOH . J 6 HOH L 54 454 180 HOH HOH . J 6 HOH L 55 455 58 HOH HOH . J 6 HOH L 56 456 170 HOH HOH . J 6 HOH L 57 457 154 HOH HOH . J 6 HOH L 58 458 29 HOH HOH . J 6 HOH L 59 459 176 HOH HOH . J 6 HOH L 60 460 165 HOH HOH . J 6 HOH L 61 461 26 HOH HOH . J 6 HOH L 62 462 98 HOH HOH . J 6 HOH L 63 463 163 HOH HOH . J 6 HOH L 64 464 169 HOH HOH . J 6 HOH L 65 465 106 HOH HOH . J 6 HOH L 66 466 183 HOH HOH . J 6 HOH L 67 467 54 HOH HOH . J 6 HOH L 68 468 127 HOH HOH . J 6 HOH L 69 469 119 HOH HOH . J 6 HOH L 70 470 88 HOH HOH . J 6 HOH L 71 471 50 HOH HOH . J 6 HOH L 72 472 129 HOH HOH . J 6 HOH L 73 473 62 HOH HOH . K 6 HOH C 1 1101 37 HOH HOH . K 6 HOH C 2 1102 41 HOH HOH . K 6 HOH C 3 1103 75 HOH HOH . K 6 HOH C 4 1104 120 HOH HOH . K 6 HOH C 5 1105 111 HOH HOH . K 6 HOH C 6 1106 14 HOH HOH . K 6 HOH C 7 1107 151 HOH HOH . K 6 HOH C 8 1108 45 HOH HOH . K 6 HOH C 9 1109 42 HOH HOH . K 6 HOH C 10 1110 5 HOH HOH . K 6 HOH C 11 1111 78 HOH HOH . K 6 HOH C 12 1112 108 HOH HOH . K 6 HOH C 13 1113 23 HOH HOH . K 6 HOH C 14 1114 10 HOH HOH . K 6 HOH C 15 1115 16 HOH HOH . K 6 HOH C 16 1116 59 HOH HOH . K 6 HOH C 17 1117 34 HOH HOH . K 6 HOH C 18 1118 136 HOH HOH . K 6 HOH C 19 1119 105 HOH HOH . K 6 HOH C 20 1120 87 HOH HOH . K 6 HOH C 21 1121 103 HOH HOH . K 6 HOH C 22 1122 56 HOH HOH . K 6 HOH C 23 1123 94 HOH HOH . K 6 HOH C 24 1124 146 HOH HOH . K 6 HOH C 25 1125 91 HOH HOH . K 6 HOH C 26 1126 159 HOH HOH . K 6 HOH C 27 1127 110 HOH HOH . K 6 HOH C 28 1128 162 HOH HOH . K 6 HOH C 29 1129 116 HOH HOH . K 6 HOH C 30 1130 179 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . H 5 0.391 -49.323 -38.291 1 64.38 ? C1 NAG 1002 C 1 HETATM 2 C C2 NAG . . . H 5 -0.358 -49.817 -39.526 1 63.44 ? C2 NAG 1002 C 1 HETATM 3 C C3 NAG . . . H 5 0.084 -51.226 -39.881 1 64.96 ? C3 NAG 1002 C 1 HETATM 4 C C4 NAG . . . H 5 1.602 -51.293 -40.018 1 67.47 ? C4 NAG 1002 C 1 HETATM 5 C C5 NAG . . . H 5 2.209 -50.82 -38.728 1 66.88 ? C5 NAG 1002 C 1 HETATM 6 C C6 NAG . . . H 5 3.733 -50.842 -38.821 1 70.36 ? C6 NAG 1002 C 1 HETATM 7 C C7 NAG . . . H 5 -2.719 -49.534 -40.202 1 59.66 ? C7 NAG 1002 C 1 HETATM 8 C C8 NAG . . . H 5 -4.193 -49.571 -39.738 1 55.95 ? C8 NAG 1002 C 1 HETATM 9 N N2 NAG . . . H 5 -1.808 -49.804 -39.256 1 59.98 ? N2 NAG 1002 C 1 HETATM 10 O O3 NAG . . . H 5 -0.503 -51.611 -41.131 1 67.57 ? O3 NAG 1002 C 1 HETATM 11 O O4 NAG . . . H 5 2.014 -52.642 -40.275 1 69.63 ? O4 NAG 1002 C 1 HETATM 12 O O5 NAG . . . H 5 1.799 -49.468 -38.514 1 65.88 ? O5 NAG 1002 C 1 HETATM 13 O O6 NAG . . . H 5 4.157 -49.849 -39.754 1 70.09 ? O6 NAG 1002 C 1 HETATM 14 O O7 NAG . . . H 5 -2.429 -49.263 -41.364 1 62.28 ? O7 NAG 1002 C 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 14 #