data_5IF0
#
_model_server_result.job_id            m9UBlqfik6I_ziEjDkW7ng 
_model_server_result.datetime_utc      '2024-10-19 03:39:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5if0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":201}' 
#
_entry.id    5IF0 
#
_exptl.entry_id    5IF0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          126.61 
_cell.angle_gamma         90 
_cell.entry_id            5IF0 
_cell.length_a            174.192 
_cell.length_b            147.578 
_cell.length_c            103.685 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5IF0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,I,J,L,M,P 1 1 
C,D,F,G,H,K,N,O,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf2 A SG CYS 145 A CYS 140 1_555 A SG CYS 201 A CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 B SG CYS 23 B CYS 23 1_555 B SG CYS 94 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
disulf ? disulf4 B SG CYS 136 B CYS 134 1_555 B SG CYS 196 B CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf5 B SG CYS 136 B CYS 134 1_555 B SG CYS 196 B CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf6 C SG CYS 7 G CYS 7 1_555 C SG CYS 158 G CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf7 C SG CYS 15 G CYS 15 1_555 C SG CYS 151 G CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf8 C SG CYS 51 G CYS 51 1_555 C SG CYS 88 G CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf9 C SG CYS 99 G CYS 99 1_555 C SG CYS 105 G CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf10 D SG CYS 22 H CYS 22 1_555 D SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf11 D SG CYS 145 H CYS 140 1_555 D SG CYS 201 H CYS 196 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf12 D SG CYS 145 H CYS 140 1_555 D SG CYS 201 H CYS 196 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf13 E SG CYS 7 I CYS 7 1_555 E SG CYS 158 I CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf14 E SG CYS 15 I CYS 15 1_555 E SG CYS 151 I CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf15 E SG CYS 51 I CYS 51 1_555 E SG CYS 88 I CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf16 F SG CYS 23 L CYS 23 1_555 F SG CYS 94 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
disulf ? disulf17 F SG CYS 136 L CYS 134 1_555 F SG CYS 196 L CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf18 F SG CYS 136 L CYS 134 1_555 F SG CYS 196 L CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 C ND2 ASN 18 G ASN 18 1_555 G C1 NAG . G NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale2 C ND2 ASN 65 G ASN 65 1_555 H C1 NAG . G NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale3 E ND2 ASN 18 I ASN 18 1_555 I C1 NAG . I NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale4 E ND2 ASN 65 I ASN 65 1_555 J C1 NAG . I NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5IF0 
_atom_sites.fract_transf_matrix[1][1]    0.005741 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004265 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006776 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012015 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 NAG G 1 1001 1001 NAG NAG . 
H 4 NAG G 1 1002 1002 NAG NAG . 
I 4 NAG I 1 201 1003 NAG NAG . 
J 4 NAG I 1 202 1004 NAG NAG . 
K 5 PO4 L 1 301 1 PO4 PO4 . 
L 6 HOH A 1 301 55 HOH HOH . 
L 6 HOH A 2 302 20 HOH HOH . 
L 6 HOH A 3 303 62 HOH HOH . 
L 6 HOH A 4 304 10 HOH HOH . 
L 6 HOH A 5 305 32 HOH HOH . 
L 6 HOH A 6 306 31 HOH HOH . 
L 6 HOH A 7 307 60 HOH HOH . 
L 6 HOH A 8 308 52 HOH HOH . 
L 6 HOH A 9 309 35 HOH HOH . 
L 6 HOH A 10 310 29 HOH HOH . 
M 6 HOH B 1 301 21 HOH HOH . 
M 6 HOH B 2 302 4 HOH HOH . 
M 6 HOH B 3 303 57 HOH HOH . 
M 6 HOH B 4 304 37 HOH HOH . 
M 6 HOH B 5 305 14 HOH HOH . 
M 6 HOH B 6 306 38 HOH HOH . 
M 6 HOH B 7 307 50 HOH HOH . 
M 6 HOH B 8 308 16 HOH HOH . 
M 6 HOH B 9 309 39 HOH HOH . 
M 6 HOH B 10 310 19 HOH HOH . 
M 6 HOH B 11 311 8 HOH HOH . 
M 6 HOH B 12 312 1 HOH HOH . 
M 6 HOH B 13 313 41 HOH HOH . 
M 6 HOH B 14 314 51 HOH HOH . 
M 6 HOH B 15 315 71 HOH HOH . 
M 6 HOH B 16 316 64 HOH HOH . 
M 6 HOH B 17 317 76 HOH HOH . 
M 6 HOH B 18 318 46 HOH HOH . 
M 6 HOH B 19 319 34 HOH HOH . 
N 6 HOH G 1 1101 12 HOH HOH . 
N 6 HOH G 2 1102 6 HOH HOH . 
N 6 HOH G 3 1103 27 HOH HOH . 
N 6 HOH G 4 1104 68 HOH HOH . 
N 6 HOH G 5 1105 75 HOH HOH . 
N 6 HOH G 6 1106 30 HOH HOH . 
N 6 HOH G 7 1107 9 HOH HOH . 
N 6 HOH G 8 1108 54 HOH HOH . 
O 6 HOH H 1 301 2 HOH HOH . 
O 6 HOH H 2 302 15 HOH HOH . 
O 6 HOH H 3 303 69 HOH HOH . 
O 6 HOH H 4 304 58 HOH HOH . 
O 6 HOH H 5 305 22 HOH HOH . 
O 6 HOH H 6 306 7 HOH HOH . 
O 6 HOH H 7 307 72 HOH HOH . 
O 6 HOH H 8 308 40 HOH HOH . 
O 6 HOH H 9 309 44 HOH HOH . 
O 6 HOH H 10 310 66 HOH HOH . 
O 6 HOH H 11 311 42 HOH HOH . 
O 6 HOH H 12 312 24 HOH HOH . 
O 6 HOH H 13 313 53 HOH HOH . 
O 6 HOH H 14 314 73 HOH HOH . 
P 6 HOH I 1 301 36 HOH HOH . 
P 6 HOH I 2 302 49 HOH HOH . 
P 6 HOH I 3 303 26 HOH HOH . 
P 6 HOH I 4 304 43 HOH HOH . 
P 6 HOH I 5 305 33 HOH HOH . 
Q 6 HOH L 1 401 63 HOH HOH . 
Q 6 HOH L 2 402 13 HOH HOH . 
Q 6 HOH L 3 403 67 HOH HOH . 
Q 6 HOH L 4 404 59 HOH HOH . 
Q 6 HOH L 5 405 18 HOH HOH . 
Q 6 HOH L 6 406 17 HOH HOH . 
Q 6 HOH L 7 407 5 HOH HOH . 
Q 6 HOH L 8 408 45 HOH HOH . 
Q 6 HOH L 9 409 70 HOH HOH . 
Q 6 HOH L 10 410 3 HOH HOH . 
Q 6 HOH L 11 411 28 HOH HOH . 
Q 6 HOH L 12 412 23 HOH HOH . 
Q 6 HOH L 13 413 65 HOH HOH . 
Q 6 HOH L 14 414 47 HOH HOH . 
Q 6 HOH L 15 415 11 HOH HOH . 
Q 6 HOH L 16 416 77 HOH HOH . 
Q 6 HOH L 17 417 61 HOH HOH . 
Q 6 HOH L 18 418 74 HOH HOH . 
Q 6 HOH L 19 419 48 HOH HOH . 
Q 6 HOH L 20 420 56 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . I 4 223.402 72.469 -33.469 1 90.21 ? C1 NAG 201 I 1 
HETATM 2 C C2 NAG . . . I 4 222.8 73.763 -34.028 1 93.46 ? C2 NAG 201 I 1 
HETATM 3 C C3 NAG . . . I 4 222.929 73.804 -35.538 1 101.37 ? C3 NAG 201 I 1 
HETATM 4 C C4 NAG . . . I 4 224.394 73.642 -35.923 1 103.51 ? C4 NAG 201 I 1 
HETATM 5 C C5 NAG . . . I 4 224.891 72.318 -35.356 1 104.56 ? C5 NAG 201 I 1 
HETATM 6 C C6 NAG . . . I 4 226.373 72.117 -35.675 1 112.51 ? C6 NAG 201 I 1 
HETATM 7 C C7 NAG . . . I 4 220.769 75.006 -33.416 1 97.2 ? C7 NAG 201 I 1 
HETATM 8 C C8 NAG . . . I 4 219.281 74.895 -33.081 1 91.86 ? C8 NAG 201 I 1 
HETATM 9 N N2 NAG . . . I 4 221.375 73.843 -33.68 1 94.86 ? N2 NAG 201 I 1 
HETATM 10 O O3 NAG . . . I 4 222.416 75.064 -36.015 1 105.15 ? O3 NAG 201 I 1 
HETATM 11 O O4 NAG . . . I 4 224.535 73.651 -37.361 1 102.13 ? O4 NAG 201 I 1 
HETATM 12 O O5 NAG . . . I 4 224.761 72.33 -33.928 1 94.98 ? O5 NAG 201 I 1 
HETATM 13 O O6 NAG . . . I 4 227.155 72.853 -34.731 1 113.86 ? O6 NAG 201 I 1 
HETATM 14 O O7 NAG . . . I 4 221.339 76.095 -33.426 1 106.14 ? O7 NAG 201 I 1 
#
_model_server_stats.io_time_ms              107 
_model_server_stats.parse_time_ms           180 
_model_server_stats.create_model_time_ms    82 
_model_server_stats.query_time_ms           374 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           14 
#