data_5IF4 # _model_server_result.job_id rbm9KlHqxoH1V4Ql7ZM5ag _model_server_result.datetime_utc '2024-10-13 22:18:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5if4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":400}' # _entry.id 5IF4 # _exptl.entry_id 5IF4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 712.664 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-{8-chloro-11-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-1-oxo-7-(1,3,5-trimethyl-1H-pyrazol-4-yl)-4,5-dihydro-1H-[1,4]diazepino[1,2-a]indol-2(3H)-yl}-1-methyl-1H-indole-6-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.68 _cell.angle_gamma 90 _cell.entry_id 5IF4 _cell.length_a 39.748 _cell.length_b 87.842 _cell.length_c 54.072 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IF4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C39 H39 Cl2 N5 O4' _chem_comp.formula_weight 712.664 _chem_comp.id 6AK _chem_comp.mon_nstd_flag . _chem_comp.name '4-{8-chloro-11-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-1-oxo-7-(1,3,5-trimethyl-1H-pyrazol-4-yl)-4,5-dihydro-1H-[1,4]diazepino[1,2-a]indol-2(3H)-yl}-1-methyl-1H-indole-6-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL2 C22 6AK sing 1 n n C24 C23 6AK sing 2 n n C23 C22 6AK doub 3 n y C23 C25 6AK sing 4 n y C22 C28 6AK sing 5 n y C29 C28 6AK sing 6 n n C25 C26 6AK doub 7 n y C28 C27 6AK doub 8 n y C26 C27 6AK sing 9 n y C26 O01 6AK sing 10 n n O01 C10 6AK sing 11 n n C10 C09 6AK sing 12 n n C09 C08 6AK sing 13 n n C04 C05 6AK doub 14 n y C04 C03 6AK sing 15 n y C05 C06 6AK sing 16 n y C08 C07 6AK sing 17 n n CL C03 6AK sing 18 n n C03 C02 6AK doub 19 n y C06 C07 6AK sing 20 n y C06 C01 6AK doub 21 n y C07 C11 6AK doub 22 n y C01 C02 6AK sing 23 n y C01 N02 6AK sing 24 n y C02 C19 6AK sing 25 n n C11 N02 6AK sing 26 n y C11 C12 6AK sing 27 n n O02 C12 6AK doub 28 n n N02 C14 6AK sing 29 n n C21 C20 6AK sing 30 n n C19 C20 6AK sing 31 n y C19 C17 6AK doub 32 n y C12 N01 6AK sing 33 n n C20 N04 6AK doub 34 n y C17 C18 6AK sing 35 n n C17 N03 6AK sing 36 n y C14 C15 6AK sing 37 n n N01 C13 6AK sing 38 n n N01 C34 6AK sing 39 n n N04 N03 6AK sing 40 n y N03 C16 6AK sing 41 n n C13 C15 6AK sing 42 n n C34 C33 6AK doub 43 n y C34 C35 6AK sing 44 n y C33 C31 6AK sing 45 n y C39 C35 6AK sing 46 n y C39 C38 6AK doub 47 n y C35 C36 6AK doub 48 n y C31 C32 6AK sing 49 n n C31 C30 6AK doub 50 n y O03 C32 6AK doub 51 n n C38 N05 6AK sing 52 n y C32 O04 6AK sing 53 n n C36 C30 6AK sing 54 n y C36 N05 6AK sing 55 n y N05 C37 6AK sing 56 n n C14 H1 6AK sing 57 n n C14 H2 6AK sing 58 n n C10 H3 6AK sing 59 n n C10 H4 6AK sing 60 n n C13 H5 6AK sing 61 n n C13 H6 6AK sing 62 n n C04 H7 6AK sing 63 n n C05 H8 6AK sing 64 n n C08 H9 6AK sing 65 n n C08 H10 6AK sing 66 n n C09 H11 6AK sing 67 n n C09 H12 6AK sing 68 n n C15 H13 6AK sing 69 n n C15 H14 6AK sing 70 n n C16 H15 6AK sing 71 n n C16 H16 6AK sing 72 n n C16 H17 6AK sing 73 n n C18 H18 6AK sing 74 n n C18 H19 6AK sing 75 n n C18 H20 6AK sing 76 n n C21 H21 6AK sing 77 n n C21 H22 6AK sing 78 n n C21 H23 6AK sing 79 n n C24 H24 6AK sing 80 n n C24 H25 6AK sing 81 n n C24 H26 6AK sing 82 n n C25 H27 6AK sing 83 n n C27 H28 6AK sing 84 n n C29 H29 6AK sing 85 n n C29 H30 6AK sing 86 n n C29 H31 6AK sing 87 n n C30 H32 6AK sing 88 n n O04 H33 6AK sing 89 n n C33 H34 6AK sing 90 n n C37 H35 6AK sing 91 n n C37 H36 6AK sing 92 n n C37 H37 6AK sing 93 n n C38 H38 6AK sing 94 n n C39 H39 6AK sing 95 n n # _atom_sites.entry_id 5IF4 _atom_sites.fract_transf_matrix[1][1] 0.025158 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004292 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011384 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018761 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 6AK A 1 400 400 6AK DRG . D 2 6AK B 1 400 400 6AK DRG . E 3 HOH A 1 501 54 HOH HOH . E 3 HOH A 2 502 51 HOH HOH . E 3 HOH A 3 503 65 HOH HOH . E 3 HOH A 4 504 27 HOH HOH . E 3 HOH A 5 505 11 HOH HOH . E 3 HOH A 6 506 103 HOH HOH . E 3 HOH A 7 507 23 HOH HOH . E 3 HOH A 8 508 67 HOH HOH . E 3 HOH A 9 509 81 HOH HOH . E 3 HOH A 10 510 49 HOH HOH . E 3 HOH A 11 511 95 HOH HOH . E 3 HOH A 12 512 42 HOH HOH . E 3 HOH A 13 513 5 HOH HOH . E 3 HOH A 14 514 8 HOH HOH . E 3 HOH A 15 515 34 HOH HOH . E 3 HOH A 16 516 30 HOH HOH . E 3 HOH A 17 517 72 HOH HOH . E 3 HOH A 18 518 41 HOH HOH . E 3 HOH A 19 519 14 HOH HOH . E 3 HOH A 20 520 101 HOH HOH . E 3 HOH A 21 521 75 HOH HOH . E 3 HOH A 22 522 84 HOH HOH . E 3 HOH A 23 523 3 HOH HOH . E 3 HOH A 24 524 52 HOH HOH . E 3 HOH A 25 525 47 HOH HOH . E 3 HOH A 26 526 37 HOH HOH . E 3 HOH A 27 527 32 HOH HOH . E 3 HOH A 28 528 77 HOH HOH . E 3 HOH A 29 529 26 HOH HOH . E 3 HOH A 30 530 62 HOH HOH . E 3 HOH A 31 531 105 HOH HOH . E 3 HOH A 32 532 94 HOH HOH . E 3 HOH A 33 533 59 HOH HOH . E 3 HOH A 34 534 33 HOH HOH . E 3 HOH A 35 535 88 HOH HOH . E 3 HOH A 36 536 19 HOH HOH . E 3 HOH A 37 537 21 HOH HOH . E 3 HOH A 38 538 20 HOH HOH . E 3 HOH A 39 539 113 HOH HOH . E 3 HOH A 40 540 92 HOH HOH . E 3 HOH A 41 541 53 HOH HOH . E 3 HOH A 42 542 48 HOH HOH . E 3 HOH A 43 543 112 HOH HOH . E 3 HOH A 44 544 22 HOH HOH . E 3 HOH A 45 545 97 HOH HOH . E 3 HOH A 46 546 96 HOH HOH . E 3 HOH A 47 547 76 HOH HOH . E 3 HOH A 48 548 16 HOH HOH . E 3 HOH A 49 549 91 HOH HOH . E 3 HOH A 50 550 104 HOH HOH . E 3 HOH A 51 551 111 HOH HOH . E 3 HOH A 52 552 90 HOH HOH . E 3 HOH A 53 553 40 HOH HOH . E 3 HOH A 54 554 98 HOH HOH . E 3 HOH A 55 555 108 HOH HOH . E 3 HOH A 56 556 28 HOH HOH . E 3 HOH A 57 557 107 HOH HOH . E 3 HOH A 58 558 15 HOH HOH . E 3 HOH A 59 559 102 HOH HOH . E 3 HOH A 60 560 56 HOH HOH . E 3 HOH A 61 561 82 HOH HOH . F 3 HOH B 1 501 24 HOH HOH . F 3 HOH B 2 502 86 HOH HOH . F 3 HOH B 3 503 80 HOH HOH . F 3 HOH B 4 504 43 HOH HOH . F 3 HOH B 5 505 64 HOH HOH . F 3 HOH B 6 506 35 HOH HOH . F 3 HOH B 7 507 9 HOH HOH . F 3 HOH B 8 508 31 HOH HOH . F 3 HOH B 9 509 1 HOH HOH . F 3 HOH B 10 510 46 HOH HOH . F 3 HOH B 11 511 18 HOH HOH . F 3 HOH B 12 512 100 HOH HOH . F 3 HOH B 13 513 61 HOH HOH . F 3 HOH B 14 514 7 HOH HOH . F 3 HOH B 15 515 114 HOH HOH . F 3 HOH B 16 516 6 HOH HOH . F 3 HOH B 17 517 25 HOH HOH . F 3 HOH B 18 518 69 HOH HOH . F 3 HOH B 19 519 70 HOH HOH . F 3 HOH B 20 520 50 HOH HOH . F 3 HOH B 21 521 2 HOH HOH . F 3 HOH B 22 522 66 HOH HOH . F 3 HOH B 23 523 10 HOH HOH . F 3 HOH B 24 524 17 HOH HOH . F 3 HOH B 25 525 110 HOH HOH . F 3 HOH B 26 526 12 HOH HOH . F 3 HOH B 27 527 55 HOH HOH . F 3 HOH B 28 528 36 HOH HOH . F 3 HOH B 29 529 89 HOH HOH . F 3 HOH B 30 530 58 HOH HOH . F 3 HOH B 31 531 60 HOH HOH . F 3 HOH B 32 532 79 HOH HOH . F 3 HOH B 33 533 39 HOH HOH . F 3 HOH B 34 534 68 HOH HOH . F 3 HOH B 35 535 83 HOH HOH . F 3 HOH B 36 536 73 HOH HOH . F 3 HOH B 37 537 38 HOH HOH . F 3 HOH B 38 538 29 HOH HOH . F 3 HOH B 39 539 71 HOH HOH . F 3 HOH B 40 540 44 HOH HOH . F 3 HOH B 41 541 13 HOH HOH . F 3 HOH B 42 542 4 HOH HOH . F 3 HOH B 43 543 93 HOH HOH . F 3 HOH B 44 544 99 HOH HOH . F 3 HOH B 45 545 85 HOH HOH . F 3 HOH B 46 546 87 HOH HOH . F 3 HOH B 47 547 63 HOH HOH . F 3 HOH B 48 548 74 HOH HOH . F 3 HOH B 49 549 78 HOH HOH . F 3 HOH B 50 550 45 HOH HOH . F 3 HOH B 51 551 109 HOH HOH . F 3 HOH B 52 552 57 HOH HOH . F 3 HOH B 53 553 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C14 6AK . . . C 2 -2.531 -9.236 21.188 1 25.7 ? C14 6AK 400 A 1 HETATM 2 C C11 6AK . . . C 2 -2.713 -7.51 19.368 1 26.43 ? C11 6AK 400 A 1 HETATM 3 C C10 6AK . . . C 2 -4.021 -7.748 15.404 1 19.62 ? C10 6AK 400 A 1 HETATM 4 C C12 6AK . . . C 2 -3.53 -6.661 20.215 1 29.66 ? C12 6AK 400 A 1 HETATM 5 C C13 6AK . . . C 2 -1.836 -7.091 22.095 1 23.89 ? C13 6AK 400 A 1 HETATM 6 C C01 6AK . . . C 2 -1.434 -9.314 18.905 1 24.05 ? C01 6AK 400 A 1 HETATM 7 C C02 6AK . . . C 2 -0.658 -10.516 18.93 1 25.87 ? C02 6AK 400 A 1 HETATM 8 C C03 6AK . . . C 2 -0.003 -10.853 17.731 1 27.73 ? C03 6AK 400 A 1 HETATM 9 CL CL 6AK . . . C 2 0.935 -12.295 17.683 1 30.35 ? CL 6AK 400 A 1 HETATM 10 C C04 6AK . . . C 2 -0.094 -10.082 16.555 1 29.51 ? C04 6AK 400 A 1 HETATM 11 C C05 6AK . . . C 2 -0.86 -8.908 16.561 1 16.76 ? C05 6AK 400 A 1 HETATM 12 C C06 6AK . . . C 2 -1.538 -8.522 17.741 1 26.08 ? C06 6AK 400 A 1 HETATM 13 C C07 6AK . . . C 2 -2.372 -7.41 18.027 1 26.13 ? C07 6AK 400 A 1 HETATM 14 C C08 6AK . . . C 2 -2.741 -6.336 17.04 1 22.23 ? C08 6AK 400 A 1 HETATM 15 C C09 6AK . . . C 2 -4.106 -6.595 16.399 1 16.06 ? C09 6AK 400 A 1 HETATM 16 O O01 6AK . . . C 2 -3.126 -7.314 14.384 1 18.25 ? O01 6AK 400 A 1 HETATM 17 O O02 6AK . . . C 2 -4.574 -6.143 19.801 1 24.68 ? O02 6AK 400 A 1 HETATM 18 N N01 6AK . . . C 2 -3.05 -6.493 21.541 1 29.55 ? N01 6AK 400 A 1 HETATM 19 N N02 6AK . . . C 2 -2.205 -8.687 19.855 1 21.97 ? N02 6AK 400 A 1 HETATM 20 C C15 6AK . . . C 2 -1.861 -8.583 22.38 1 22.5 ? C15 6AK 400 A 1 HETATM 21 N N03 6AK . . . C 2 0.309 -12.053 22.018 1 42.78 ? N03 6AK 400 A 1 HETATM 22 C C16 6AK . . . C 2 1.115 -12.122 23.225 1 53.56 ? C16 6AK 400 A 1 HETATM 23 C C17 6AK . . . C 2 0.427 -11.079 21.078 1 21.75 ? C17 6AK 400 A 1 HETATM 24 C C18 6AK . . . C 2 1.421 -9.982 21.239 1 29.12 ? C18 6AK 400 A 1 HETATM 25 C C19 6AK . . . C 2 -0.515 -11.385 20.093 1 29.61 ? C19 6AK 400 A 1 HETATM 26 C C20 6AK . . . C 2 -1.167 -12.561 20.545 1 37.02 ? C20 6AK 400 A 1 HETATM 27 C C21 6AK . . . C 2 -2.263 -13.309 19.867 1 27.9 ? C21 6AK 400 A 1 HETATM 28 N N04 6AK . . . C 2 -0.649 -12.971 21.732 1 41.19 ? N04 6AK 400 A 1 HETATM 29 C C22 6AK . . . C 2 -2.684 -9.648 11.011 1 29.47 ? C22 6AK 400 A 1 HETATM 30 CL CL2 6AK . . . C 2 -2.51 -10.652 9.634 1 33.92 ? CL2 6AK 400 A 1 HETATM 31 C C23 6AK . . . C 2 -2.2 -8.326 10.964 1 22.96 ? C23 6AK 400 A 1 HETATM 32 C C24 6AK . . . C 2 -1.525 -7.773 9.725 1 19.51 ? C24 6AK 400 A 1 HETATM 33 C C25 6AK . . . C 2 -2.353 -7.535 12.118 1 21.23 ? C25 6AK 400 A 1 HETATM 34 C C26 6AK . . . C 2 -2.967 -8.049 13.257 1 22.26 ? C26 6AK 400 A 1 HETATM 35 C C27 6AK . . . C 2 -3.449 -9.378 13.284 1 21.65 ? C27 6AK 400 A 1 HETATM 36 C C28 6AK . . . C 2 -3.314 -10.209 12.142 1 30.83 ? C28 6AK 400 A 1 HETATM 37 C C29 6AK . . . C 2 -3.815 -11.644 12.091 1 17.11 ? C29 6AK 400 A 1 HETATM 38 C C30 6AK . . . C 2 -5.747 -4.598 24.201 1 41.15 ? C30 6AK 400 A 1 HETATM 39 C C31 6AK . . . C 2 -5.976 -5.849 23.606 1 41.99 ? C31 6AK 400 A 1 HETATM 40 C C32 6AK . . . C 2 -7.203 -6.622 23.84 1 58.4 ? C32 6AK 400 A 1 HETATM 41 O O03 6AK . . . C 2 -7.368 -7.809 23.608 1 62.94 ? O03 6AK 400 A 1 HETATM 42 O O04 6AK . . . C 2 -8.169 -5.836 24.329 1 70.71 -1 O04 6AK 400 A 1 HETATM 43 C C33 6AK . . . C 2 -5.046 -6.379 22.753 1 34.85 ? C33 6AK 400 A 1 HETATM 44 C C34 6AK . . . C 2 -3.827 -5.713 22.441 1 34.48 ? C34 6AK 400 A 1 HETATM 45 C C35 6AK . . . C 2 -3.554 -4.442 23.035 1 38.73 ? C35 6AK 400 A 1 HETATM 46 C C36 6AK . . . C 2 -4.53 -3.918 23.903 1 47.37 ? C36 6AK 400 A 1 HETATM 47 N N05 6AK . . . C 2 -4.053 -2.687 24.354 1 52.57 ? N05 6AK 400 A 1 HETATM 48 C C37 6AK . . . C 2 -4.786 -1.842 25.271 1 55.59 ? C37 6AK 400 A 1 HETATM 49 C C38 6AK . . . C 2 -2.827 -2.395 23.822 1 49.66 ? C38 6AK 400 A 1 HETATM 50 C C39 6AK . . . C 2 -2.501 -3.464 23.008 1 50.26 ? C39 6AK 400 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 50 #