data_5IF5 # _model_server_result.job_id 1wv0iCsqWxFCdkKjW6g1lA _model_server_result.datetime_utc '2024-11-15 16:25:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5if5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":804}' # _entry.id 5IF5 # _exptl.entry_id 5IF5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5IF5 _cell.length_a 68.43 _cell.length_b 68.43 _cell.length_c 395.68 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IF5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_445 -y-1,-x-1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -34.215 -59.262118 65.946667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 108 n n C1 C2 EDO sing 109 n n C1 H11 EDO sing 110 n n C1 H12 EDO sing 111 n n O1 HO1 EDO sing 112 n n C2 O2 EDO sing 113 n n C2 H21 EDO sing 114 n n C2 H22 EDO sing 115 n n O2 HO2 EDO sing 116 n n # _atom_sites.entry_id 5IF5 _atom_sites.fract_transf_matrix[1][1] 0.014613 _atom_sites.fract_transf_matrix[1][2] 0.008437 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016874 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002527 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 801 1 DMS DMS . C 3 EDO A 1 802 1 EDO EDO . D 3 EDO A 1 803 2 EDO EDO . E 3 EDO A 1 804 3 EDO EDO . F 4 6B0 A 1 805 1 6B0 039 . G 5 HOH A 1 901 152 HOH HOH . G 5 HOH A 2 902 121 HOH HOH . G 5 HOH A 3 903 31 HOH HOH . G 5 HOH A 4 904 115 HOH HOH . G 5 HOH A 5 905 132 HOH HOH . G 5 HOH A 6 906 129 HOH HOH . G 5 HOH A 7 907 41 HOH HOH . G 5 HOH A 8 908 134 HOH HOH . G 5 HOH A 9 909 2 HOH HOH . G 5 HOH A 10 910 151 HOH HOH . G 5 HOH A 11 911 34 HOH HOH . G 5 HOH A 12 912 23 HOH HOH . G 5 HOH A 13 913 1 HOH HOH . G 5 HOH A 14 914 38 HOH HOH . G 5 HOH A 15 915 4 HOH HOH . G 5 HOH A 16 916 119 HOH HOH . G 5 HOH A 17 917 84 HOH HOH . G 5 HOH A 18 918 10 HOH HOH . G 5 HOH A 19 919 91 HOH HOH . G 5 HOH A 20 920 5 HOH HOH . G 5 HOH A 21 921 69 HOH HOH . G 5 HOH A 22 922 70 HOH HOH . G 5 HOH A 23 923 14 HOH HOH . G 5 HOH A 24 924 114 HOH HOH . G 5 HOH A 25 925 51 HOH HOH . G 5 HOH A 26 926 47 HOH HOH . G 5 HOH A 27 927 153 HOH HOH . G 5 HOH A 28 928 17 HOH HOH . G 5 HOH A 29 929 3 HOH HOH . G 5 HOH A 30 930 131 HOH HOH . G 5 HOH A 31 931 98 HOH HOH . G 5 HOH A 32 932 120 HOH HOH . G 5 HOH A 33 933 52 HOH HOH . G 5 HOH A 34 934 19 HOH HOH . G 5 HOH A 35 935 20 HOH HOH . G 5 HOH A 36 936 37 HOH HOH . G 5 HOH A 37 937 11 HOH HOH . G 5 HOH A 38 938 44 HOH HOH . G 5 HOH A 39 939 77 HOH HOH . G 5 HOH A 40 940 43 HOH HOH . G 5 HOH A 41 941 18 HOH HOH . G 5 HOH A 42 942 104 HOH HOH . G 5 HOH A 43 943 148 HOH HOH . G 5 HOH A 44 944 146 HOH HOH . G 5 HOH A 45 945 26 HOH HOH . G 5 HOH A 46 946 39 HOH HOH . G 5 HOH A 47 947 73 HOH HOH . G 5 HOH A 48 948 103 HOH HOH . G 5 HOH A 49 949 81 HOH HOH . G 5 HOH A 50 950 63 HOH HOH . G 5 HOH A 51 951 22 HOH HOH . G 5 HOH A 52 952 28 HOH HOH . G 5 HOH A 53 953 154 HOH HOH . G 5 HOH A 54 954 112 HOH HOH . G 5 HOH A 55 955 42 HOH HOH . G 5 HOH A 56 956 53 HOH HOH . G 5 HOH A 57 957 12 HOH HOH . G 5 HOH A 58 958 54 HOH HOH . G 5 HOH A 59 959 155 HOH HOH . G 5 HOH A 60 960 9 HOH HOH . G 5 HOH A 61 961 40 HOH HOH . G 5 HOH A 62 962 27 HOH HOH . G 5 HOH A 63 963 106 HOH HOH . G 5 HOH A 64 964 13 HOH HOH . G 5 HOH A 65 965 100 HOH HOH . G 5 HOH A 66 966 117 HOH HOH . G 5 HOH A 67 967 24 HOH HOH . G 5 HOH A 68 968 50 HOH HOH . G 5 HOH A 69 969 45 HOH HOH . G 5 HOH A 70 970 64 HOH HOH . G 5 HOH A 71 971 30 HOH HOH . G 5 HOH A 72 972 33 HOH HOH . G 5 HOH A 73 973 6 HOH HOH . G 5 HOH A 74 974 118 HOH HOH . G 5 HOH A 75 975 32 HOH HOH . G 5 HOH A 76 976 135 HOH HOH . G 5 HOH A 77 977 150 HOH HOH . G 5 HOH A 78 978 29 HOH HOH . G 5 HOH A 79 979 21 HOH HOH . G 5 HOH A 80 980 71 HOH HOH . G 5 HOH A 81 981 55 HOH HOH . G 5 HOH A 82 982 46 HOH HOH . G 5 HOH A 83 983 113 HOH HOH . G 5 HOH A 84 984 59 HOH HOH . G 5 HOH A 85 985 57 HOH HOH . G 5 HOH A 86 986 110 HOH HOH . G 5 HOH A 87 987 145 HOH HOH . G 5 HOH A 88 988 25 HOH HOH . G 5 HOH A 89 989 143 HOH HOH . G 5 HOH A 90 990 130 HOH HOH . G 5 HOH A 91 991 124 HOH HOH . G 5 HOH A 92 992 94 HOH HOH . G 5 HOH A 93 993 139 HOH HOH . G 5 HOH A 94 994 149 HOH HOH . G 5 HOH A 95 995 95 HOH HOH . G 5 HOH A 96 996 61 HOH HOH . G 5 HOH A 97 997 128 HOH HOH . G 5 HOH A 98 998 7 HOH HOH . G 5 HOH A 99 999 16 HOH HOH . G 5 HOH A 100 1000 8 HOH HOH . G 5 HOH A 101 1001 35 HOH HOH . G 5 HOH A 102 1002 142 HOH HOH . G 5 HOH A 103 1003 85 HOH HOH . G 5 HOH A 104 1004 111 HOH HOH . G 5 HOH A 105 1005 116 HOH HOH . G 5 HOH A 106 1006 62 HOH HOH . G 5 HOH A 107 1007 89 HOH HOH . G 5 HOH A 108 1008 60 HOH HOH . G 5 HOH A 109 1009 76 HOH HOH . G 5 HOH A 110 1010 93 HOH HOH . G 5 HOH A 111 1011 127 HOH HOH . G 5 HOH A 112 1012 137 HOH HOH . G 5 HOH A 113 1013 87 HOH HOH . G 5 HOH A 114 1014 144 HOH HOH . G 5 HOH A 115 1015 109 HOH HOH . G 5 HOH A 116 1016 99 HOH HOH . G 5 HOH A 117 1017 101 HOH HOH . G 5 HOH A 118 1018 140 HOH HOH . G 5 HOH A 119 1019 58 HOH HOH . G 5 HOH A 120 1020 82 HOH HOH . G 5 HOH A 121 1021 83 HOH HOH . G 5 HOH A 122 1022 79 HOH HOH . G 5 HOH A 123 1023 96 HOH HOH . G 5 HOH A 124 1024 36 HOH HOH . G 5 HOH A 125 1025 141 HOH HOH . G 5 HOH A 126 1026 147 HOH HOH . G 5 HOH A 127 1027 125 HOH HOH . G 5 HOH A 128 1028 156 HOH HOH . G 5 HOH A 129 1029 88 HOH HOH . G 5 HOH A 130 1030 136 HOH HOH . G 5 HOH A 131 1031 56 HOH HOH . G 5 HOH A 132 1032 133 HOH HOH . G 5 HOH A 133 1033 108 HOH HOH . G 5 HOH A 134 1034 126 HOH HOH . G 5 HOH A 135 1035 97 HOH HOH . G 5 HOH A 136 1036 72 HOH HOH . G 5 HOH A 137 1037 78 HOH HOH . G 5 HOH A 138 1038 66 HOH HOH . G 5 HOH A 139 1039 92 HOH HOH . G 5 HOH A 140 1040 67 HOH HOH . G 5 HOH A 141 1041 90 HOH HOH . G 5 HOH A 142 1042 65 HOH HOH . G 5 HOH A 143 1043 48 HOH HOH . G 5 HOH A 144 1044 15 HOH HOH . G 5 HOH A 145 1045 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 -7.246 -23.514 34.169 1 56.59 ? C1 EDO 804 A 1 HETATM 2 O O1 EDO . . . E 3 -7.244 -24.79 34.821 1 52.1 ? O1 EDO 804 A 1 HETATM 3 C C2 EDO . . . E 3 -7.143 -22.398 35.199 1 57.77 ? C2 EDO 804 A 1 HETATM 4 O O2 EDO . . . E 3 -5.999 -21.581 34.907 1 63.34 ? O2 EDO 804 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #