data_5IF8 # _model_server_result.job_id S5kw1WBhcBbFOoJ25j-lsQ _model_server_result.datetime_utc '2025-01-10 08:24:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5if8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 5IF8 # _exptl.entry_id 5IF8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 209.632 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(4-chlorophenyl)methyl]-1,3,4-oxadiazol-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5IF8 _cell.length_a 68.78 _cell.length_b 68.78 _cell.length_c 396.1 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IF8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_445 -y-1,-x-1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -34.39 -59.565227 66.016667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H8 Cl N3 O' _chem_comp.formula_weight 209.632 _chem_comp.id 6AX _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(4-chlorophenyl)methyl]-1,3,4-oxadiazol-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N01 C02 6AX sing 1 n n O14 C02 6AX sing 2 n y O14 C05 6AX sing 3 n y C13 C12 6AX doub 4 n y C13 C07 6AX sing 5 n y C02 N03 6AX doub 6 n y C06 C05 6AX sing 7 n n C06 C07 6AX sing 8 n n C05 N04 6AX doub 9 n y N03 N04 6AX sing 10 n y C12 C10 6AX sing 11 n y C07 C08 6AX doub 12 n y C10 CL 6AX sing 13 n n C10 C09 6AX doub 14 n y C08 C09 6AX sing 15 n y N01 H1 6AX sing 16 n n N01 H2 6AX sing 17 n n C06 H3 6AX sing 18 n n C06 H4 6AX sing 19 n n C08 H5 6AX sing 20 n n C09 H6 6AX sing 21 n n C12 H7 6AX sing 22 n n C13 H8 6AX sing 23 n n # _atom_sites.entry_id 5IF8 _atom_sites.fract_transf_matrix[1][1] 0.014539 _atom_sites.fract_transf_matrix[1][2] 0.008394 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016788 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002525 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6AX A 1 801 1 6AX 643 . C 3 DMS A 1 802 2 DMS DMS . D 4 CL A 1 803 3 CL CL . E 5 EDO A 1 804 4 EDO EDO . F 6 GOL A 1 805 5 GOL GOL . G 7 HOH A 1 901 79 HOH HOH . G 7 HOH A 2 902 77 HOH HOH . G 7 HOH A 3 903 36 HOH HOH . G 7 HOH A 4 904 29 HOH HOH . G 7 HOH A 5 905 5 HOH HOH . G 7 HOH A 6 906 32 HOH HOH . G 7 HOH A 7 907 71 HOH HOH . G 7 HOH A 8 908 58 HOH HOH . G 7 HOH A 9 909 39 HOH HOH . G 7 HOH A 10 910 23 HOH HOH . G 7 HOH A 11 911 3 HOH HOH . G 7 HOH A 12 912 26 HOH HOH . G 7 HOH A 13 913 94 HOH HOH . G 7 HOH A 14 914 42 HOH HOH . G 7 HOH A 15 915 2 HOH HOH . G 7 HOH A 16 916 91 HOH HOH . G 7 HOH A 17 917 34 HOH HOH . G 7 HOH A 18 918 52 HOH HOH . G 7 HOH A 19 919 63 HOH HOH . G 7 HOH A 20 920 99 HOH HOH . G 7 HOH A 21 921 17 HOH HOH . G 7 HOH A 22 922 46 HOH HOH . G 7 HOH A 23 923 10 HOH HOH . G 7 HOH A 24 924 22 HOH HOH . G 7 HOH A 25 925 30 HOH HOH . G 7 HOH A 26 926 38 HOH HOH . G 7 HOH A 27 927 1 HOH HOH . G 7 HOH A 28 928 9 HOH HOH . G 7 HOH A 29 929 14 HOH HOH . G 7 HOH A 30 930 33 HOH HOH . G 7 HOH A 31 931 101 HOH HOH . G 7 HOH A 32 932 92 HOH HOH . G 7 HOH A 33 933 55 HOH HOH . G 7 HOH A 34 934 53 HOH HOH . G 7 HOH A 35 935 4 HOH HOH . G 7 HOH A 36 936 86 HOH HOH . G 7 HOH A 37 937 40 HOH HOH . G 7 HOH A 38 938 19 HOH HOH . G 7 HOH A 39 939 82 HOH HOH . G 7 HOH A 40 940 16 HOH HOH . G 7 HOH A 41 941 44 HOH HOH . G 7 HOH A 42 942 18 HOH HOH . G 7 HOH A 43 943 13 HOH HOH . G 7 HOH A 44 944 27 HOH HOH . G 7 HOH A 45 945 98 HOH HOH . G 7 HOH A 46 946 90 HOH HOH . G 7 HOH A 47 947 59 HOH HOH . G 7 HOH A 48 948 12 HOH HOH . G 7 HOH A 49 949 31 HOH HOH . G 7 HOH A 50 950 96 HOH HOH . G 7 HOH A 51 951 76 HOH HOH . G 7 HOH A 52 952 11 HOH HOH . G 7 HOH A 53 953 66 HOH HOH . G 7 HOH A 54 954 8 HOH HOH . G 7 HOH A 55 955 80 HOH HOH . G 7 HOH A 56 956 35 HOH HOH . G 7 HOH A 57 957 47 HOH HOH . G 7 HOH A 58 958 20 HOH HOH . G 7 HOH A 59 959 93 HOH HOH . G 7 HOH A 60 960 28 HOH HOH . G 7 HOH A 61 961 75 HOH HOH . G 7 HOH A 62 962 37 HOH HOH . G 7 HOH A 63 963 97 HOH HOH . G 7 HOH A 64 964 41 HOH HOH . G 7 HOH A 65 965 49 HOH HOH . G 7 HOH A 66 966 25 HOH HOH . G 7 HOH A 67 967 54 HOH HOH . G 7 HOH A 68 968 21 HOH HOH . G 7 HOH A 69 969 24 HOH HOH . G 7 HOH A 70 970 87 HOH HOH . G 7 HOH A 71 971 62 HOH HOH . G 7 HOH A 72 972 70 HOH HOH . G 7 HOH A 73 973 67 HOH HOH . G 7 HOH A 74 974 6 HOH HOH . G 7 HOH A 75 975 72 HOH HOH . G 7 HOH A 76 976 7 HOH HOH . G 7 HOH A 77 977 95 HOH HOH . G 7 HOH A 78 978 60 HOH HOH . G 7 HOH A 79 979 83 HOH HOH . G 7 HOH A 80 980 84 HOH HOH . G 7 HOH A 81 981 68 HOH HOH . G 7 HOH A 82 982 88 HOH HOH . G 7 HOH A 83 983 78 HOH HOH . G 7 HOH A 84 984 85 HOH HOH . G 7 HOH A 85 985 65 HOH HOH . G 7 HOH A 86 986 48 HOH HOH . G 7 HOH A 87 987 89 HOH HOH . G 7 HOH A 88 988 100 HOH HOH . G 7 HOH A 89 989 69 HOH HOH . G 7 HOH A 90 990 64 HOH HOH . G 7 HOH A 91 991 73 HOH HOH . G 7 HOH A 92 992 81 HOH HOH . G 7 HOH A 93 993 43 HOH HOH . G 7 HOH A 94 994 50 HOH HOH . G 7 HOH A 95 995 15 HOH HOH . G 7 HOH A 96 996 61 HOH HOH . G 7 HOH A 97 997 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 6AX . A . B 2 -30.532 -43.786 62.38 0.45 104.11 ? C10 6AX 801 A 1 HETATM 2 C C10 6AX . B . B 2 -28.229 -49.69 60.677 0.55 108.6 ? C10 6AX 801 A 1 HETATM 3 N N01 6AX . A . B 2 -27.019 -51.421 60.306 0.45 108.08 ? N01 6AX 801 A 1 HETATM 4 N N01 6AX . B . B 2 -31.089 -41.757 63.311 0.55 102.56 ? N01 6AX 801 A 1 HETATM 5 C C02 6AX . A . B 2 -27.6 -50.121 60.606 0.45 108.47 ? C02 6AX 801 A 1 HETATM 6 C C02 6AX . B . B 2 -30.585 -43.075 62.969 0.55 103.75 ? C02 6AX 801 A 1 HETATM 7 N N03 6AX . A . B 2 -26.956 -49.055 61.057 0.45 107.91 ? N03 6AX 801 A 1 HETATM 8 N N03 6AX . B . B 2 -29.704 -43.793 63.649 0.55 103.46 ? N03 6AX 801 A 1 HETATM 9 N N04 6AX . A . B 2 -27.872 -48.047 61.206 0.45 107.69 ? N04 6AX 801 A 1 HETATM 10 N N04 6AX . B . B 2 -29.516 -44.972 62.976 0.55 104.13 ? N04 6AX 801 A 1 HETATM 11 C C05 6AX . A . B 2 -29.056 -48.514 60.841 0.45 107.45 ? C05 6AX 801 A 1 HETATM 12 C C05 6AX . B . B 2 -30.287 -44.949 61.897 0.55 104.75 ? C05 6AX 801 A 1 HETATM 13 C C06 6AX . A . B 2 -30.403 -47.792 60.82 0.45 106.11 ? C06 6AX 801 A 1 HETATM 14 C C06 6AX . B . B 2 -30.475 -46.003 60.8 0.55 105.24 ? C06 6AX 801 A 1 HETATM 15 C C07 6AX . A . B 2 -30.419 -46.378 61.401 0.45 105.29 ? C07 6AX 801 A 1 HETATM 16 C C07 6AX . B . B 2 -29.633 -47.284 60.795 0.55 106.23 ? C07 6AX 801 A 1 HETATM 17 C C08 6AX . A . B 2 -30.03 -46.12 62.708 0.45 104.51 ? C08 6AX 801 A 1 HETATM 18 C C08 6AX . B . B 2 -30.248 -48.438 60.335 0.55 106.5 ? C08 6AX 801 A 1 HETATM 19 C C09 6AX . A . B 2 -30.08 -44.819 63.194 0.45 104.3 ? C09 6AX 801 A 1 HETATM 20 C C09 6AX . B . B 2 -29.557 -49.636 60.279 0.55 107.42 ? C09 6AX 801 A 1 HETATM 21 CL CL 6AX . A . B 2 -30.614 -42.112 62.987 0.45 103.09 ? CL 6AX 801 A 1 HETATM 22 CL CL 6AX . B . B 2 -27.336 -51.244 60.6 0.55 108.78 ? CL 6AX 801 A 1 HETATM 23 C C12 6AX . A . B 2 -30.925 -44.046 61.08 0.45 104.3 ? C12 6AX 801 A 1 HETATM 24 C C12 6AX . B . B 2 -27.604 -48.532 61.13 0.55 108.06 ? C12 6AX 801 A 1 HETATM 25 C C13 6AX . A . B 2 -30.877 -45.343 60.6 0.45 104.97 ? C13 6AX 801 A 1 HETATM 26 C C13 6AX . B . B 2 -28.301 -47.328 61.185 0.55 106.99 ? C13 6AX 801 A 1 HETATM 27 O O14 6AX . A . B 2 -28.898 -49.796 60.47 0.45 108.23 ? O14 6AX 801 A 1 HETATM 28 O O14 6AX . B . B 2 -30.948 -43.776 61.888 0.55 104.12 ? O14 6AX 801 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #