data_5IF8 # _model_server_result.job_id Udb8Rw8aoEkAPbzZ37M5lQ _model_server_result.datetime_utc '2024-10-19 19:12:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5if8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":804}' # _entry.id 5IF8 # _exptl.entry_id 5IF8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5IF8 _cell.length_a 68.78 _cell.length_b 68.78 _cell.length_c 396.1 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IF8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_445 -y-1,-x-1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -34.39 -59.565227 66.016667 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 115 n n C1 C2 EDO sing 116 n n C1 H11 EDO sing 117 n n C1 H12 EDO sing 118 n n O1 HO1 EDO sing 119 n n C2 O2 EDO sing 120 n n C2 H21 EDO sing 121 n n C2 H22 EDO sing 122 n n O2 HO2 EDO sing 123 n n # _atom_sites.entry_id 5IF8 _atom_sites.fract_transf_matrix[1][1] 0.014539 _atom_sites.fract_transf_matrix[1][2] 0.008394 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016788 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002525 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6AX A 1 801 1 6AX 643 . C 3 DMS A 1 802 2 DMS DMS . D 4 CL A 1 803 3 CL CL . E 5 EDO A 1 804 4 EDO EDO . F 6 GOL A 1 805 5 GOL GOL . G 7 HOH A 1 901 79 HOH HOH . G 7 HOH A 2 902 77 HOH HOH . G 7 HOH A 3 903 36 HOH HOH . G 7 HOH A 4 904 29 HOH HOH . G 7 HOH A 5 905 5 HOH HOH . G 7 HOH A 6 906 32 HOH HOH . G 7 HOH A 7 907 71 HOH HOH . G 7 HOH A 8 908 58 HOH HOH . G 7 HOH A 9 909 39 HOH HOH . G 7 HOH A 10 910 23 HOH HOH . G 7 HOH A 11 911 3 HOH HOH . G 7 HOH A 12 912 26 HOH HOH . G 7 HOH A 13 913 94 HOH HOH . G 7 HOH A 14 914 42 HOH HOH . G 7 HOH A 15 915 2 HOH HOH . G 7 HOH A 16 916 91 HOH HOH . G 7 HOH A 17 917 34 HOH HOH . G 7 HOH A 18 918 52 HOH HOH . G 7 HOH A 19 919 63 HOH HOH . G 7 HOH A 20 920 99 HOH HOH . G 7 HOH A 21 921 17 HOH HOH . G 7 HOH A 22 922 46 HOH HOH . G 7 HOH A 23 923 10 HOH HOH . G 7 HOH A 24 924 22 HOH HOH . G 7 HOH A 25 925 30 HOH HOH . G 7 HOH A 26 926 38 HOH HOH . G 7 HOH A 27 927 1 HOH HOH . G 7 HOH A 28 928 9 HOH HOH . G 7 HOH A 29 929 14 HOH HOH . G 7 HOH A 30 930 33 HOH HOH . G 7 HOH A 31 931 101 HOH HOH . G 7 HOH A 32 932 92 HOH HOH . G 7 HOH A 33 933 55 HOH HOH . G 7 HOH A 34 934 53 HOH HOH . G 7 HOH A 35 935 4 HOH HOH . G 7 HOH A 36 936 86 HOH HOH . G 7 HOH A 37 937 40 HOH HOH . G 7 HOH A 38 938 19 HOH HOH . G 7 HOH A 39 939 82 HOH HOH . G 7 HOH A 40 940 16 HOH HOH . G 7 HOH A 41 941 44 HOH HOH . G 7 HOH A 42 942 18 HOH HOH . G 7 HOH A 43 943 13 HOH HOH . G 7 HOH A 44 944 27 HOH HOH . G 7 HOH A 45 945 98 HOH HOH . G 7 HOH A 46 946 90 HOH HOH . G 7 HOH A 47 947 59 HOH HOH . G 7 HOH A 48 948 12 HOH HOH . G 7 HOH A 49 949 31 HOH HOH . G 7 HOH A 50 950 96 HOH HOH . G 7 HOH A 51 951 76 HOH HOH . G 7 HOH A 52 952 11 HOH HOH . G 7 HOH A 53 953 66 HOH HOH . G 7 HOH A 54 954 8 HOH HOH . G 7 HOH A 55 955 80 HOH HOH . G 7 HOH A 56 956 35 HOH HOH . G 7 HOH A 57 957 47 HOH HOH . G 7 HOH A 58 958 20 HOH HOH . G 7 HOH A 59 959 93 HOH HOH . G 7 HOH A 60 960 28 HOH HOH . G 7 HOH A 61 961 75 HOH HOH . G 7 HOH A 62 962 37 HOH HOH . G 7 HOH A 63 963 97 HOH HOH . G 7 HOH A 64 964 41 HOH HOH . G 7 HOH A 65 965 49 HOH HOH . G 7 HOH A 66 966 25 HOH HOH . G 7 HOH A 67 967 54 HOH HOH . G 7 HOH A 68 968 21 HOH HOH . G 7 HOH A 69 969 24 HOH HOH . G 7 HOH A 70 970 87 HOH HOH . G 7 HOH A 71 971 62 HOH HOH . G 7 HOH A 72 972 70 HOH HOH . G 7 HOH A 73 973 67 HOH HOH . G 7 HOH A 74 974 6 HOH HOH . G 7 HOH A 75 975 72 HOH HOH . G 7 HOH A 76 976 7 HOH HOH . G 7 HOH A 77 977 95 HOH HOH . G 7 HOH A 78 978 60 HOH HOH . G 7 HOH A 79 979 83 HOH HOH . G 7 HOH A 80 980 84 HOH HOH . G 7 HOH A 81 981 68 HOH HOH . G 7 HOH A 82 982 88 HOH HOH . G 7 HOH A 83 983 78 HOH HOH . G 7 HOH A 84 984 85 HOH HOH . G 7 HOH A 85 985 65 HOH HOH . G 7 HOH A 86 986 48 HOH HOH . G 7 HOH A 87 987 89 HOH HOH . G 7 HOH A 88 988 100 HOH HOH . G 7 HOH A 89 989 69 HOH HOH . G 7 HOH A 90 990 64 HOH HOH . G 7 HOH A 91 991 73 HOH HOH . G 7 HOH A 92 992 81 HOH HOH . G 7 HOH A 93 993 43 HOH HOH . G 7 HOH A 94 994 50 HOH HOH . G 7 HOH A 95 995 15 HOH HOH . G 7 HOH A 96 996 61 HOH HOH . G 7 HOH A 97 997 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 5 -3.555 -31.205 56.329 1 64.76 ? C1 EDO 804 A 1 HETATM 2 O O1 EDO . . . E 5 -4.938 -31.33 56.696 1 56.32 ? O1 EDO 804 A 1 HETATM 3 C C2 EDO . . . E 5 -2.817 -30.245 57.258 1 72.37 ? C2 EDO 804 A 1 HETATM 4 O O2 EDO . . . E 5 -1.908 -31.003 58.07 1 75.7 ? O2 EDO 804 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #