data_5IFA # _model_server_result.job_id 3PbFkiJjc1u_ylFj2FRObg _model_server_result.datetime_utc '2024-11-08 16:53:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ifa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":306}' # _entry.id 5IFA # _exptl.entry_id 5IFA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IFA _cell.length_a 79.063 _cell.length_b 124.201 _cell.length_c 47.946 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IFA _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 A SG CYS 145 H CYS 140 1_555 A SG CYS 201 H CYS 196 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 145 H CYS 140 1_555 A SG CYS 201 H CYS 196 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 B SG CYS 23 L CYS 23 1_555 B SG CYS 94 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf5 B SG CYS 136 L CYS 134 1_555 B SG CYS 196 L CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.059 ? disulf ? disulf6 B SG CYS 136 L CYS 134 1_555 B SG CYS 196 L CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.018 ? covale ? covale1 A CE LYS 134 H LYS 129 1_555 I C26 1PE . H 1PE 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.503 ? covale ? covale2 I C24 1PE . H 1PE 307 4_576 B OG SER 83 L SER 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 5IFA _atom_sites.fract_transf_matrix[1][1] 0.012648 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008051 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020857 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 H 1 301 2 SO4 SO4 . D 3 SO4 H 1 302 3 SO4 SO4 . E 3 SO4 H 1 303 4 SO4 SO4 . F 4 1PE H 1 304 1 1PE 1PE . G 4 1PE H 1 305 2 1PE 1PE . H 4 1PE H 1 306 3 1PE 1PE . I 4 1PE H 1 307 4 1PE 1PE . J 5 GOL H 1 308 1 GOL GOL . K 5 GOL H 1 309 6 GOL GOL . L 5 GOL H 1 310 7 GOL GOL . M 5 GOL H 1 311 8 GOL GOL . N 5 GOL L 1 301 2 GOL GOL . O 5 GOL L 1 302 3 GOL GOL . P 5 GOL L 1 303 5 GOL GOL . Q 6 HOH H 1 401 166 HOH HOH . Q 6 HOH H 2 402 142 HOH HOH . Q 6 HOH H 3 403 78 HOH HOH . Q 6 HOH H 4 404 153 HOH HOH . Q 6 HOH H 5 405 58 HOH HOH . Q 6 HOH H 6 406 13 HOH HOH . Q 6 HOH H 7 407 30 HOH HOH . Q 6 HOH H 8 408 5 HOH HOH . Q 6 HOH H 9 409 2 HOH HOH . Q 6 HOH H 10 410 9 HOH HOH . Q 6 HOH H 11 411 161 HOH HOH . Q 6 HOH H 12 412 66 HOH HOH . Q 6 HOH H 13 413 193 HOH HOH . Q 6 HOH H 14 414 71 HOH HOH . Q 6 HOH H 15 415 179 HOH HOH . Q 6 HOH H 16 416 62 HOH HOH . Q 6 HOH H 17 417 32 HOH HOH . Q 6 HOH H 18 418 76 HOH HOH . Q 6 HOH H 19 419 1 HOH HOH . Q 6 HOH H 20 420 118 HOH HOH . Q 6 HOH H 21 421 19 HOH HOH . Q 6 HOH H 22 422 34 HOH HOH . Q 6 HOH H 23 423 185 HOH HOH . Q 6 HOH H 24 424 101 HOH HOH . Q 6 HOH H 25 425 75 HOH HOH . Q 6 HOH H 26 426 160 HOH HOH . Q 6 HOH H 27 427 8 HOH HOH . Q 6 HOH H 28 428 92 HOH HOH . Q 6 HOH H 29 429 18 HOH HOH . Q 6 HOH H 30 430 73 HOH HOH . Q 6 HOH H 31 431 53 HOH HOH . Q 6 HOH H 32 432 125 HOH HOH . Q 6 HOH H 33 433 198 HOH HOH . Q 6 HOH H 34 434 33 HOH HOH . Q 6 HOH H 35 435 31 HOH HOH . Q 6 HOH H 36 436 46 HOH HOH . Q 6 HOH H 37 437 117 HOH HOH . Q 6 HOH H 38 438 44 HOH HOH . Q 6 HOH H 39 439 102 HOH HOH . Q 6 HOH H 40 440 149 HOH HOH . Q 6 HOH H 41 441 91 HOH HOH . Q 6 HOH H 42 442 137 HOH HOH . Q 6 HOH H 43 443 57 HOH HOH . Q 6 HOH H 44 444 38 HOH HOH . Q 6 HOH H 45 445 25 HOH HOH . Q 6 HOH H 46 446 94 HOH HOH . Q 6 HOH H 47 447 112 HOH HOH . Q 6 HOH H 48 448 159 HOH HOH . Q 6 HOH H 49 449 47 HOH HOH . Q 6 HOH H 50 450 51 HOH HOH . Q 6 HOH H 51 451 136 HOH HOH . Q 6 HOH H 52 452 26 HOH HOH . Q 6 HOH H 53 453 7 HOH HOH . Q 6 HOH H 54 454 63 HOH HOH . Q 6 HOH H 55 455 42 HOH HOH . Q 6 HOH H 56 456 197 HOH HOH . Q 6 HOH H 57 457 6 HOH HOH . Q 6 HOH H 58 458 29 HOH HOH . Q 6 HOH H 59 459 123 HOH HOH . Q 6 HOH H 60 460 163 HOH HOH . Q 6 HOH H 61 461 99 HOH HOH . Q 6 HOH H 62 462 10 HOH HOH . Q 6 HOH H 63 463 15 HOH HOH . Q 6 HOH H 64 464 170 HOH HOH . Q 6 HOH H 65 465 84 HOH HOH . Q 6 HOH H 66 466 36 HOH HOH . Q 6 HOH H 67 467 122 HOH HOH . Q 6 HOH H 68 468 45 HOH HOH . Q 6 HOH H 69 469 37 HOH HOH . Q 6 HOH H 70 470 60 HOH HOH . Q 6 HOH H 71 471 180 HOH HOH . Q 6 HOH H 72 472 155 HOH HOH . Q 6 HOH H 73 473 48 HOH HOH . Q 6 HOH H 74 474 59 HOH HOH . Q 6 HOH H 75 475 43 HOH HOH . Q 6 HOH H 76 476 143 HOH HOH . Q 6 HOH H 77 477 138 HOH HOH . Q 6 HOH H 78 478 141 HOH HOH . Q 6 HOH H 79 479 65 HOH HOH . Q 6 HOH H 80 480 178 HOH HOH . Q 6 HOH H 81 481 56 HOH HOH . Q 6 HOH H 82 482 194 HOH HOH . Q 6 HOH H 83 483 98 HOH HOH . Q 6 HOH H 84 484 80 HOH HOH . Q 6 HOH H 85 485 171 HOH HOH . Q 6 HOH H 86 486 139 HOH HOH . Q 6 HOH H 87 487 150 HOH HOH . Q 6 HOH H 88 488 174 HOH HOH . Q 6 HOH H 89 489 189 HOH HOH . Q 6 HOH H 90 490 79 HOH HOH . Q 6 HOH H 91 491 103 HOH HOH . Q 6 HOH H 92 492 188 HOH HOH . Q 6 HOH H 93 493 124 HOH HOH . Q 6 HOH H 94 494 195 HOH HOH . Q 6 HOH H 95 495 110 HOH HOH . Q 6 HOH H 96 496 72 HOH HOH . Q 6 HOH H 97 497 145 HOH HOH . Q 6 HOH H 98 498 175 HOH HOH . Q 6 HOH H 99 499 201 HOH HOH . Q 6 HOH H 100 500 196 HOH HOH . Q 6 HOH H 101 501 172 HOH HOH . Q 6 HOH H 102 502 182 HOH HOH . Q 6 HOH H 103 503 156 HOH HOH . Q 6 HOH H 104 504 121 HOH HOH . Q 6 HOH H 105 505 105 HOH HOH . Q 6 HOH H 106 506 186 HOH HOH . Q 6 HOH H 107 507 140 HOH HOH . Q 6 HOH H 108 508 162 HOH HOH . Q 6 HOH H 109 509 147 HOH HOH . Q 6 HOH H 110 510 109 HOH HOH . Q 6 HOH H 111 511 203 HOH HOH . Q 6 HOH H 112 512 107 HOH HOH . Q 6 HOH H 113 513 131 HOH HOH . Q 6 HOH H 114 514 169 HOH HOH . Q 6 HOH H 115 515 108 HOH HOH . R 6 HOH L 1 401 86 HOH HOH . R 6 HOH L 2 402 181 HOH HOH . R 6 HOH L 3 403 89 HOH HOH . R 6 HOH L 4 404 55 HOH HOH . R 6 HOH L 5 405 97 HOH HOH . R 6 HOH L 6 406 95 HOH HOH . R 6 HOH L 7 407 27 HOH HOH . R 6 HOH L 8 408 192 HOH HOH . R 6 HOH L 9 409 130 HOH HOH . R 6 HOH L 10 410 184 HOH HOH . R 6 HOH L 11 411 69 HOH HOH . R 6 HOH L 12 412 132 HOH HOH . R 6 HOH L 13 413 24 HOH HOH . R 6 HOH L 14 414 41 HOH HOH . R 6 HOH L 15 415 106 HOH HOH . R 6 HOH L 16 416 85 HOH HOH . R 6 HOH L 17 417 173 HOH HOH . R 6 HOH L 18 418 21 HOH HOH . R 6 HOH L 19 419 68 HOH HOH . R 6 HOH L 20 420 22 HOH HOH . R 6 HOH L 21 421 144 HOH HOH . R 6 HOH L 22 422 64 HOH HOH . R 6 HOH L 23 423 50 HOH HOH . R 6 HOH L 24 424 133 HOH HOH . R 6 HOH L 25 425 28 HOH HOH . R 6 HOH L 26 426 39 HOH HOH . R 6 HOH L 27 427 4 HOH HOH . R 6 HOH L 28 428 49 HOH HOH . R 6 HOH L 29 429 120 HOH HOH . R 6 HOH L 30 430 90 HOH HOH . R 6 HOH L 31 431 168 HOH HOH . R 6 HOH L 32 432 82 HOH HOH . R 6 HOH L 33 433 11 HOH HOH . R 6 HOH L 34 434 23 HOH HOH . R 6 HOH L 35 435 40 HOH HOH . R 6 HOH L 36 436 3 HOH HOH . R 6 HOH L 37 437 116 HOH HOH . R 6 HOH L 38 438 17 HOH HOH . R 6 HOH L 39 439 35 HOH HOH . R 6 HOH L 40 440 202 HOH HOH . R 6 HOH L 41 441 52 HOH HOH . R 6 HOH L 42 442 200 HOH HOH . R 6 HOH L 43 443 96 HOH HOH . R 6 HOH L 44 444 146 HOH HOH . R 6 HOH L 45 445 88 HOH HOH . R 6 HOH L 46 446 111 HOH HOH . R 6 HOH L 47 447 12 HOH HOH . R 6 HOH L 48 448 113 HOH HOH . R 6 HOH L 49 449 191 HOH HOH . R 6 HOH L 50 450 126 HOH HOH . R 6 HOH L 51 451 129 HOH HOH . R 6 HOH L 52 452 16 HOH HOH . R 6 HOH L 53 453 127 HOH HOH . R 6 HOH L 54 454 187 HOH HOH . R 6 HOH L 55 455 104 HOH HOH . R 6 HOH L 56 456 70 HOH HOH . R 6 HOH L 57 457 119 HOH HOH . R 6 HOH L 58 458 151 HOH HOH . R 6 HOH L 59 459 134 HOH HOH . R 6 HOH L 60 460 93 HOH HOH . R 6 HOH L 61 461 67 HOH HOH . R 6 HOH L 62 462 61 HOH HOH . R 6 HOH L 63 463 100 HOH HOH . R 6 HOH L 64 464 54 HOH HOH . R 6 HOH L 65 465 74 HOH HOH . R 6 HOH L 66 466 14 HOH HOH . R 6 HOH L 67 467 157 HOH HOH . R 6 HOH L 68 468 177 HOH HOH . R 6 HOH L 69 469 114 HOH HOH . R 6 HOH L 70 470 87 HOH HOH . R 6 HOH L 71 471 165 HOH HOH . R 6 HOH L 72 472 83 HOH HOH . R 6 HOH L 73 473 20 HOH HOH . R 6 HOH L 74 474 158 HOH HOH . R 6 HOH L 75 475 199 HOH HOH . R 6 HOH L 76 476 115 HOH HOH . R 6 HOH L 77 477 148 HOH HOH . R 6 HOH L 78 478 81 HOH HOH . R 6 HOH L 79 479 176 HOH HOH . R 6 HOH L 80 480 190 HOH HOH . R 6 HOH L 81 481 128 HOH HOH . R 6 HOH L 82 482 77 HOH HOH . R 6 HOH L 83 483 135 HOH HOH . R 6 HOH L 84 484 164 HOH HOH . R 6 HOH L 85 485 154 HOH HOH . R 6 HOH L 86 486 183 HOH HOH . R 6 HOH L 87 487 152 HOH HOH . R 6 HOH L 88 488 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . H 4 14.619 152.405 -4.154 1 61.03 ? OH2 1PE 306 H 1 HETATM 2 C C12 1PE . . . H 4 13.557 151.904 -4.974 1 64.29 ? C12 1PE 306 H 1 HETATM 3 C C22 1PE . . . H 4 13.659 150.386 -5.065 1 66.61 ? C22 1PE 306 H 1 HETATM 4 O OH3 1PE . . . H 4 12.602 149.887 -5.883 1 69.3 ? OH3 1PE 306 H 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #