data_5IFA
#
_model_server_result.job_id            ezJLFt70K_3FMczVWDxQwQ 
_model_server_result.datetime_utc      '2024-11-08 16:59:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ifa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":311}' 
#
_entry.id    5IFA 
#
_exptl.entry_id    5IFA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5IFA 
_cell.length_a            79.063 
_cell.length_b            124.201 
_cell.length_c            47.946 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5IFA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 J N N 
? 5 K N N 
? 5 L N N 
? 5 M N N 
? 5 N N N 
? 5 O N N 
? 5 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf2 A SG CYS 145 H CYS 140 1_555 A SG CYS 201 H CYS 196 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 A SG CYS 145 H CYS 140 1_555 A SG CYS 201 H CYS 196 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf4 B SG CYS 23 L CYS 23 1_555 B SG CYS 94 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
disulf ? disulf5 B SG CYS 136 L CYS 134 1_555 B SG CYS 196 L CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf6 B SG CYS 136 L CYS 134 1_555 B SG CYS 196 L CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.018 ? 
covale ? covale1 A CE LYS 134 H LYS 129 1_555 I C26 1PE . H 1PE 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.503 ? 
covale ? covale2 I C24 1PE . H 1PE 307 4_576 B OG SER 83 L SER 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 166 n n 
C1 C2 GOL sing 167 n n 
C1 H11 GOL sing 168 n n 
C1 H12 GOL sing 169 n n 
O1 HO1 GOL sing 170 n n 
C2 O2 GOL sing 171 n n 
C2 C3 GOL sing 172 n n 
C2 H2 GOL sing 173 n n 
O2 HO2 GOL sing 174 n n 
C3 O3 GOL sing 175 n n 
C3 H31 GOL sing 176 n n 
C3 H32 GOL sing 177 n n 
O3 HO3 GOL sing 178 n n 
#
_atom_sites.entry_id                     5IFA 
_atom_sites.fract_transf_matrix[1][1]    0.012648 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008051 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020857 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 SO4 H 1 301 2 SO4 SO4 . 
D 3 SO4 H 1 302 3 SO4 SO4 . 
E 3 SO4 H 1 303 4 SO4 SO4 . 
F 4 1PE H 1 304 1 1PE 1PE . 
G 4 1PE H 1 305 2 1PE 1PE . 
H 4 1PE H 1 306 3 1PE 1PE . 
I 4 1PE H 1 307 4 1PE 1PE . 
J 5 GOL H 1 308 1 GOL GOL . 
K 5 GOL H 1 309 6 GOL GOL . 
L 5 GOL H 1 310 7 GOL GOL . 
M 5 GOL H 1 311 8 GOL GOL . 
N 5 GOL L 1 301 2 GOL GOL . 
O 5 GOL L 1 302 3 GOL GOL . 
P 5 GOL L 1 303 5 GOL GOL . 
Q 6 HOH H 1 401 166 HOH HOH . 
Q 6 HOH H 2 402 142 HOH HOH . 
Q 6 HOH H 3 403 78 HOH HOH . 
Q 6 HOH H 4 404 153 HOH HOH . 
Q 6 HOH H 5 405 58 HOH HOH . 
Q 6 HOH H 6 406 13 HOH HOH . 
Q 6 HOH H 7 407 30 HOH HOH . 
Q 6 HOH H 8 408 5 HOH HOH . 
Q 6 HOH H 9 409 2 HOH HOH . 
Q 6 HOH H 10 410 9 HOH HOH . 
Q 6 HOH H 11 411 161 HOH HOH . 
Q 6 HOH H 12 412 66 HOH HOH . 
Q 6 HOH H 13 413 193 HOH HOH . 
Q 6 HOH H 14 414 71 HOH HOH . 
Q 6 HOH H 15 415 179 HOH HOH . 
Q 6 HOH H 16 416 62 HOH HOH . 
Q 6 HOH H 17 417 32 HOH HOH . 
Q 6 HOH H 18 418 76 HOH HOH . 
Q 6 HOH H 19 419 1 HOH HOH . 
Q 6 HOH H 20 420 118 HOH HOH . 
Q 6 HOH H 21 421 19 HOH HOH . 
Q 6 HOH H 22 422 34 HOH HOH . 
Q 6 HOH H 23 423 185 HOH HOH . 
Q 6 HOH H 24 424 101 HOH HOH . 
Q 6 HOH H 25 425 75 HOH HOH . 
Q 6 HOH H 26 426 160 HOH HOH . 
Q 6 HOH H 27 427 8 HOH HOH . 
Q 6 HOH H 28 428 92 HOH HOH . 
Q 6 HOH H 29 429 18 HOH HOH . 
Q 6 HOH H 30 430 73 HOH HOH . 
Q 6 HOH H 31 431 53 HOH HOH . 
Q 6 HOH H 32 432 125 HOH HOH . 
Q 6 HOH H 33 433 198 HOH HOH . 
Q 6 HOH H 34 434 33 HOH HOH . 
Q 6 HOH H 35 435 31 HOH HOH . 
Q 6 HOH H 36 436 46 HOH HOH . 
Q 6 HOH H 37 437 117 HOH HOH . 
Q 6 HOH H 38 438 44 HOH HOH . 
Q 6 HOH H 39 439 102 HOH HOH . 
Q 6 HOH H 40 440 149 HOH HOH . 
Q 6 HOH H 41 441 91 HOH HOH . 
Q 6 HOH H 42 442 137 HOH HOH . 
Q 6 HOH H 43 443 57 HOH HOH . 
Q 6 HOH H 44 444 38 HOH HOH . 
Q 6 HOH H 45 445 25 HOH HOH . 
Q 6 HOH H 46 446 94 HOH HOH . 
Q 6 HOH H 47 447 112 HOH HOH . 
Q 6 HOH H 48 448 159 HOH HOH . 
Q 6 HOH H 49 449 47 HOH HOH . 
Q 6 HOH H 50 450 51 HOH HOH . 
Q 6 HOH H 51 451 136 HOH HOH . 
Q 6 HOH H 52 452 26 HOH HOH . 
Q 6 HOH H 53 453 7 HOH HOH . 
Q 6 HOH H 54 454 63 HOH HOH . 
Q 6 HOH H 55 455 42 HOH HOH . 
Q 6 HOH H 56 456 197 HOH HOH . 
Q 6 HOH H 57 457 6 HOH HOH . 
Q 6 HOH H 58 458 29 HOH HOH . 
Q 6 HOH H 59 459 123 HOH HOH . 
Q 6 HOH H 60 460 163 HOH HOH . 
Q 6 HOH H 61 461 99 HOH HOH . 
Q 6 HOH H 62 462 10 HOH HOH . 
Q 6 HOH H 63 463 15 HOH HOH . 
Q 6 HOH H 64 464 170 HOH HOH . 
Q 6 HOH H 65 465 84 HOH HOH . 
Q 6 HOH H 66 466 36 HOH HOH . 
Q 6 HOH H 67 467 122 HOH HOH . 
Q 6 HOH H 68 468 45 HOH HOH . 
Q 6 HOH H 69 469 37 HOH HOH . 
Q 6 HOH H 70 470 60 HOH HOH . 
Q 6 HOH H 71 471 180 HOH HOH . 
Q 6 HOH H 72 472 155 HOH HOH . 
Q 6 HOH H 73 473 48 HOH HOH . 
Q 6 HOH H 74 474 59 HOH HOH . 
Q 6 HOH H 75 475 43 HOH HOH . 
Q 6 HOH H 76 476 143 HOH HOH . 
Q 6 HOH H 77 477 138 HOH HOH . 
Q 6 HOH H 78 478 141 HOH HOH . 
Q 6 HOH H 79 479 65 HOH HOH . 
Q 6 HOH H 80 480 178 HOH HOH . 
Q 6 HOH H 81 481 56 HOH HOH . 
Q 6 HOH H 82 482 194 HOH HOH . 
Q 6 HOH H 83 483 98 HOH HOH . 
Q 6 HOH H 84 484 80 HOH HOH . 
Q 6 HOH H 85 485 171 HOH HOH . 
Q 6 HOH H 86 486 139 HOH HOH . 
Q 6 HOH H 87 487 150 HOH HOH . 
Q 6 HOH H 88 488 174 HOH HOH . 
Q 6 HOH H 89 489 189 HOH HOH . 
Q 6 HOH H 90 490 79 HOH HOH . 
Q 6 HOH H 91 491 103 HOH HOH . 
Q 6 HOH H 92 492 188 HOH HOH . 
Q 6 HOH H 93 493 124 HOH HOH . 
Q 6 HOH H 94 494 195 HOH HOH . 
Q 6 HOH H 95 495 110 HOH HOH . 
Q 6 HOH H 96 496 72 HOH HOH . 
Q 6 HOH H 97 497 145 HOH HOH . 
Q 6 HOH H 98 498 175 HOH HOH . 
Q 6 HOH H 99 499 201 HOH HOH . 
Q 6 HOH H 100 500 196 HOH HOH . 
Q 6 HOH H 101 501 172 HOH HOH . 
Q 6 HOH H 102 502 182 HOH HOH . 
Q 6 HOH H 103 503 156 HOH HOH . 
Q 6 HOH H 104 504 121 HOH HOH . 
Q 6 HOH H 105 505 105 HOH HOH . 
Q 6 HOH H 106 506 186 HOH HOH . 
Q 6 HOH H 107 507 140 HOH HOH . 
Q 6 HOH H 108 508 162 HOH HOH . 
Q 6 HOH H 109 509 147 HOH HOH . 
Q 6 HOH H 110 510 109 HOH HOH . 
Q 6 HOH H 111 511 203 HOH HOH . 
Q 6 HOH H 112 512 107 HOH HOH . 
Q 6 HOH H 113 513 131 HOH HOH . 
Q 6 HOH H 114 514 169 HOH HOH . 
Q 6 HOH H 115 515 108 HOH HOH . 
R 6 HOH L 1 401 86 HOH HOH . 
R 6 HOH L 2 402 181 HOH HOH . 
R 6 HOH L 3 403 89 HOH HOH . 
R 6 HOH L 4 404 55 HOH HOH . 
R 6 HOH L 5 405 97 HOH HOH . 
R 6 HOH L 6 406 95 HOH HOH . 
R 6 HOH L 7 407 27 HOH HOH . 
R 6 HOH L 8 408 192 HOH HOH . 
R 6 HOH L 9 409 130 HOH HOH . 
R 6 HOH L 10 410 184 HOH HOH . 
R 6 HOH L 11 411 69 HOH HOH . 
R 6 HOH L 12 412 132 HOH HOH . 
R 6 HOH L 13 413 24 HOH HOH . 
R 6 HOH L 14 414 41 HOH HOH . 
R 6 HOH L 15 415 106 HOH HOH . 
R 6 HOH L 16 416 85 HOH HOH . 
R 6 HOH L 17 417 173 HOH HOH . 
R 6 HOH L 18 418 21 HOH HOH . 
R 6 HOH L 19 419 68 HOH HOH . 
R 6 HOH L 20 420 22 HOH HOH . 
R 6 HOH L 21 421 144 HOH HOH . 
R 6 HOH L 22 422 64 HOH HOH . 
R 6 HOH L 23 423 50 HOH HOH . 
R 6 HOH L 24 424 133 HOH HOH . 
R 6 HOH L 25 425 28 HOH HOH . 
R 6 HOH L 26 426 39 HOH HOH . 
R 6 HOH L 27 427 4 HOH HOH . 
R 6 HOH L 28 428 49 HOH HOH . 
R 6 HOH L 29 429 120 HOH HOH . 
R 6 HOH L 30 430 90 HOH HOH . 
R 6 HOH L 31 431 168 HOH HOH . 
R 6 HOH L 32 432 82 HOH HOH . 
R 6 HOH L 33 433 11 HOH HOH . 
R 6 HOH L 34 434 23 HOH HOH . 
R 6 HOH L 35 435 40 HOH HOH . 
R 6 HOH L 36 436 3 HOH HOH . 
R 6 HOH L 37 437 116 HOH HOH . 
R 6 HOH L 38 438 17 HOH HOH . 
R 6 HOH L 39 439 35 HOH HOH . 
R 6 HOH L 40 440 202 HOH HOH . 
R 6 HOH L 41 441 52 HOH HOH . 
R 6 HOH L 42 442 200 HOH HOH . 
R 6 HOH L 43 443 96 HOH HOH . 
R 6 HOH L 44 444 146 HOH HOH . 
R 6 HOH L 45 445 88 HOH HOH . 
R 6 HOH L 46 446 111 HOH HOH . 
R 6 HOH L 47 447 12 HOH HOH . 
R 6 HOH L 48 448 113 HOH HOH . 
R 6 HOH L 49 449 191 HOH HOH . 
R 6 HOH L 50 450 126 HOH HOH . 
R 6 HOH L 51 451 129 HOH HOH . 
R 6 HOH L 52 452 16 HOH HOH . 
R 6 HOH L 53 453 127 HOH HOH . 
R 6 HOH L 54 454 187 HOH HOH . 
R 6 HOH L 55 455 104 HOH HOH . 
R 6 HOH L 56 456 70 HOH HOH . 
R 6 HOH L 57 457 119 HOH HOH . 
R 6 HOH L 58 458 151 HOH HOH . 
R 6 HOH L 59 459 134 HOH HOH . 
R 6 HOH L 60 460 93 HOH HOH . 
R 6 HOH L 61 461 67 HOH HOH . 
R 6 HOH L 62 462 61 HOH HOH . 
R 6 HOH L 63 463 100 HOH HOH . 
R 6 HOH L 64 464 54 HOH HOH . 
R 6 HOH L 65 465 74 HOH HOH . 
R 6 HOH L 66 466 14 HOH HOH . 
R 6 HOH L 67 467 157 HOH HOH . 
R 6 HOH L 68 468 177 HOH HOH . 
R 6 HOH L 69 469 114 HOH HOH . 
R 6 HOH L 70 470 87 HOH HOH . 
R 6 HOH L 71 471 165 HOH HOH . 
R 6 HOH L 72 472 83 HOH HOH . 
R 6 HOH L 73 473 20 HOH HOH . 
R 6 HOH L 74 474 158 HOH HOH . 
R 6 HOH L 75 475 199 HOH HOH . 
R 6 HOH L 76 476 115 HOH HOH . 
R 6 HOH L 77 477 148 HOH HOH . 
R 6 HOH L 78 478 81 HOH HOH . 
R 6 HOH L 79 479 176 HOH HOH . 
R 6 HOH L 80 480 190 HOH HOH . 
R 6 HOH L 81 481 128 HOH HOH . 
R 6 HOH L 82 482 77 HOH HOH . 
R 6 HOH L 83 483 135 HOH HOH . 
R 6 HOH L 84 484 164 HOH HOH . 
R 6 HOH L 85 485 154 HOH HOH . 
R 6 HOH L 86 486 183 HOH HOH . 
R 6 HOH L 87 487 152 HOH HOH . 
R 6 HOH L 88 488 167 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . M 5 22.06 150.661 16.731 1 78.71 ? C1 GOL 311 H 1 
HETATM 2 O O1 GOL . . . M 5 21.765 151.352 17.93 1 80.91 ? O1 GOL 311 H 1 
HETATM 3 C C2 GOL . . . M 5 23.557 150.693 16.49 1 76.98 ? C2 GOL 311 H 1 
HETATM 4 O O2 GOL . . . M 5 24.166 149.786 17.391 1 78.95 ? O2 GOL 311 H 1 
HETATM 5 C C3 GOL . . . M 5 24.121 152.099 16.673 1 71.76 ? C3 GOL 311 H 1 
HETATM 6 O O3 GOL . . . M 5 24.531 152.315 17.996 1 69.3 ? O3 GOL 311 H 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#