data_5IFB # _model_server_result.job_id pVozbWLJRhX-CA11pWoIAQ _model_server_result.datetime_utc '2024-10-19 17:35:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ifb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":802}' # _entry.id 5IFB # _exptl.entry_id 5IFB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5IFB _cell.length_a 68.92 _cell.length_b 68.92 _cell.length_c 396.42 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IFB _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_445 -y-1,-x-1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -34.46 -59.686471 66.07 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 105 n n S C1 DMS sing 106 n n S C2 DMS sing 107 n n C1 H11 DMS sing 108 n n C1 H12 DMS sing 109 n n C1 H13 DMS sing 110 n n C2 H21 DMS sing 111 n n C2 H22 DMS sing 112 n n C2 H23 DMS sing 113 n n # _atom_sites.entry_id 5IFB _atom_sites.fract_transf_matrix[1][1] 0.01451 _atom_sites.fract_transf_matrix[1][2] 0.008377 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016754 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002523 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6AV A 1 801 1 6AV 719 . C 3 DMS A 1 802 2 DMS DMS . D 4 CL A 1 803 3 CL CL . E 5 HOH A 1 901 27 HOH HOH . E 5 HOH A 2 902 147 HOH HOH . E 5 HOH A 3 903 55 HOH HOH . E 5 HOH A 4 904 67 HOH HOH . E 5 HOH A 5 905 34 HOH HOH . E 5 HOH A 6 906 48 HOH HOH . E 5 HOH A 7 907 163 HOH HOH . E 5 HOH A 8 908 206 HOH HOH . E 5 HOH A 9 909 185 HOH HOH . E 5 HOH A 10 910 22 HOH HOH . E 5 HOH A 11 911 108 HOH HOH . E 5 HOH A 12 912 104 HOH HOH . E 5 HOH A 13 913 30 HOH HOH . E 5 HOH A 14 914 186 HOH HOH . E 5 HOH A 15 915 37 HOH HOH . E 5 HOH A 16 916 5 HOH HOH . E 5 HOH A 17 917 46 HOH HOH . E 5 HOH A 18 918 201 HOH HOH . E 5 HOH A 19 919 4 HOH HOH . E 5 HOH A 20 920 10 HOH HOH . E 5 HOH A 21 921 42 HOH HOH . E 5 HOH A 22 922 40 HOH HOH . E 5 HOH A 23 923 182 HOH HOH . E 5 HOH A 24 924 44 HOH HOH . E 5 HOH A 25 925 29 HOH HOH . E 5 HOH A 26 926 24 HOH HOH . E 5 HOH A 27 927 17 HOH HOH . E 5 HOH A 28 928 50 HOH HOH . E 5 HOH A 29 929 9 HOH HOH . E 5 HOH A 30 930 3 HOH HOH . E 5 HOH A 31 931 91 HOH HOH . E 5 HOH A 32 932 47 HOH HOH . E 5 HOH A 33 933 2 HOH HOH . E 5 HOH A 34 934 202 HOH HOH . E 5 HOH A 35 935 203 HOH HOH . E 5 HOH A 36 936 14 HOH HOH . E 5 HOH A 37 937 56 HOH HOH . E 5 HOH A 38 938 21 HOH HOH . E 5 HOH A 39 939 26 HOH HOH . E 5 HOH A 40 940 172 HOH HOH . E 5 HOH A 41 941 124 HOH HOH . E 5 HOH A 42 942 6 HOH HOH . E 5 HOH A 43 943 1 HOH HOH . E 5 HOH A 44 944 13 HOH HOH . E 5 HOH A 45 945 11 HOH HOH . E 5 HOH A 46 946 71 HOH HOH . E 5 HOH A 47 947 12 HOH HOH . E 5 HOH A 48 948 19 HOH HOH . E 5 HOH A 49 949 28 HOH HOH . E 5 HOH A 50 950 62 HOH HOH . E 5 HOH A 51 951 89 HOH HOH . E 5 HOH A 52 952 130 HOH HOH . E 5 HOH A 53 953 200 HOH HOH . E 5 HOH A 54 954 32 HOH HOH . E 5 HOH A 55 955 16 HOH HOH . E 5 HOH A 56 956 80 HOH HOH . E 5 HOH A 57 957 20 HOH HOH . E 5 HOH A 58 958 18 HOH HOH . E 5 HOH A 59 959 205 HOH HOH . E 5 HOH A 60 960 41 HOH HOH . E 5 HOH A 61 961 57 HOH HOH . E 5 HOH A 62 962 101 HOH HOH . E 5 HOH A 63 963 92 HOH HOH . E 5 HOH A 64 964 144 HOH HOH . E 5 HOH A 65 965 161 HOH HOH . E 5 HOH A 66 966 159 HOH HOH . E 5 HOH A 67 967 69 HOH HOH . E 5 HOH A 68 968 87 HOH HOH . E 5 HOH A 69 969 123 HOH HOH . E 5 HOH A 70 970 35 HOH HOH . E 5 HOH A 71 971 23 HOH HOH . E 5 HOH A 72 972 94 HOH HOH . E 5 HOH A 73 973 36 HOH HOH . E 5 HOH A 74 974 54 HOH HOH . E 5 HOH A 75 975 139 HOH HOH . E 5 HOH A 76 976 174 HOH HOH . E 5 HOH A 77 977 7 HOH HOH . E 5 HOH A 78 978 72 HOH HOH . E 5 HOH A 79 979 88 HOH HOH . E 5 HOH A 80 980 113 HOH HOH . E 5 HOH A 81 981 58 HOH HOH . E 5 HOH A 82 982 38 HOH HOH . E 5 HOH A 83 983 134 HOH HOH . E 5 HOH A 84 984 171 HOH HOH . E 5 HOH A 85 985 64 HOH HOH . E 5 HOH A 86 986 68 HOH HOH . E 5 HOH A 87 987 143 HOH HOH . E 5 HOH A 88 988 198 HOH HOH . E 5 HOH A 89 989 8 HOH HOH . E 5 HOH A 90 990 175 HOH HOH . E 5 HOH A 91 991 53 HOH HOH . E 5 HOH A 92 992 25 HOH HOH . E 5 HOH A 93 993 65 HOH HOH . E 5 HOH A 94 994 60 HOH HOH . E 5 HOH A 95 995 63 HOH HOH . E 5 HOH A 96 996 73 HOH HOH . E 5 HOH A 97 997 191 HOH HOH . E 5 HOH A 98 998 204 HOH HOH . E 5 HOH A 99 999 61 HOH HOH . E 5 HOH A 100 1000 189 HOH HOH . E 5 HOH A 101 1001 100 HOH HOH . E 5 HOH A 102 1002 127 HOH HOH . E 5 HOH A 103 1003 115 HOH HOH . E 5 HOH A 104 1004 112 HOH HOH . E 5 HOH A 105 1005 154 HOH HOH . E 5 HOH A 106 1006 195 HOH HOH . E 5 HOH A 107 1007 39 HOH HOH . E 5 HOH A 108 1008 105 HOH HOH . E 5 HOH A 109 1009 190 HOH HOH . E 5 HOH A 110 1010 106 HOH HOH . E 5 HOH A 111 1011 140 HOH HOH . E 5 HOH A 112 1012 157 HOH HOH . E 5 HOH A 113 1013 95 HOH HOH . E 5 HOH A 114 1014 90 HOH HOH . E 5 HOH A 115 1015 170 HOH HOH . E 5 HOH A 116 1016 121 HOH HOH . E 5 HOH A 117 1017 129 HOH HOH . E 5 HOH A 118 1018 152 HOH HOH . E 5 HOH A 119 1019 114 HOH HOH . E 5 HOH A 120 1020 180 HOH HOH . E 5 HOH A 121 1021 77 HOH HOH . E 5 HOH A 122 1022 192 HOH HOH . E 5 HOH A 123 1023 93 HOH HOH . E 5 HOH A 124 1024 122 HOH HOH . E 5 HOH A 125 1025 78 HOH HOH . E 5 HOH A 126 1026 51 HOH HOH . E 5 HOH A 127 1027 66 HOH HOH . E 5 HOH A 128 1028 110 HOH HOH . E 5 HOH A 129 1029 15 HOH HOH . E 5 HOH A 130 1030 76 HOH HOH . E 5 HOH A 131 1031 188 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 -14.776 -26.092 59.706 1 63.02 ? S DMS 802 A 1 HETATM 2 O O DMS . . . C 3 -13.419 -26.006 60.311 1 53.85 ? O DMS 802 A 1 HETATM 3 C C1 DMS . . . C 3 -15.321 -27.792 59.381 1 50.21 ? C1 DMS 802 A 1 HETATM 4 C C2 DMS . . . C 3 -16.022 -25.519 60.894 1 67.24 ? C2 DMS 802 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #