data_5IFO # _model_server_result.job_id GR-pBxNOGHVlGlHOZmgU9Q _model_server_result.datetime_utc '2024-11-30 04:17:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ifo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 5IFO # _exptl.entry_id 5IFO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.371 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MYRISTIC ACID' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.06 _cell.angle_gamma 90 _cell.entry_id 5IFO _cell.length_a 181.11 _cell.length_b 38.06 _cell.length_c 94.95 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IFO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 124 A CYS 124 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 168 A CYS 168 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 A SG CYS 200 A CYS 200 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 A SG CYS 245 A CYS 245 1_555 A SG CYS 253 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 A SG CYS 265 A CYS 265 1_555 A SG CYS 279 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 A SG CYS 278 A CYS 278 1_555 A SG CYS 289 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 A SG CYS 316 A CYS 316 1_555 A SG CYS 361 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 A SG CYS 360 A CYS 360 1_555 A SG CYS 369 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf12 A SG CYS 392 A CYS 392 1_555 A SG CYS 438 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf13 A SG CYS 437 A CYS 437 1_555 A SG CYS 448 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf14 A SG CYS 461 A CYS 461 1_555 A SG CYS 477 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf15 A SG CYS 476 A CYS 476 1_555 A SG CYS 487 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf16 A SG CYS 514 A CYS 514 1_555 A SG CYS 559 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf17 A SG CYS 558 A CYS 558 1_555 A SG CYS 567 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A NE2 HIS 146 A HIS 146 1_555 B RU RU . A RU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc2 A NZ LYS 199 A LYS 199 1_555 C RU RU . A RU 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc3 A NE2 HIS 242 A HIS 242 1_555 C RU RU . A RU 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc4 B RU RU . A RU 601 1_555 J O HOH . A HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc5 B RU RU . A RU 601 1_555 J O HOH . A HOH 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.817 ? metalc ? metalc6 B RU RU . A RU 601 1_555 J O HOH . A HOH 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc7 B RU RU . A RU 601 1_555 J O HOH . A HOH 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc8 C RU RU . A RU 602 1_555 J O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc9 C RU RU . A RU 602 1_555 J O HOH . A HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 ? metalc ? metalc10 C RU RU . A RU 602 1_555 J O HOH . A HOH 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? # _chem_comp.formula 'C14 H28 O2' _chem_comp.formula_weight 228.371 _chem_comp.id MYR _chem_comp.mon_nstd_flag . _chem_comp.name 'MYRISTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MYR doub 237 n n C1 O2 MYR sing 238 n n C1 C2 MYR sing 239 n n O2 HO2 MYR sing 240 n n C2 C3 MYR sing 241 n n C2 H21 MYR sing 242 n n C2 H22 MYR sing 243 n n C3 C4 MYR sing 244 n n C3 H31 MYR sing 245 n n C3 H32 MYR sing 246 n n C4 C5 MYR sing 247 n n C4 H41 MYR sing 248 n n C4 H42 MYR sing 249 n n C5 C6 MYR sing 250 n n C5 H51 MYR sing 251 n n C5 H52 MYR sing 252 n n C6 C7 MYR sing 253 n n C6 H61 MYR sing 254 n n C6 H62 MYR sing 255 n n C7 C8 MYR sing 256 n n C7 H71 MYR sing 257 n n C7 H72 MYR sing 258 n n C8 C9 MYR sing 259 n n C8 H81 MYR sing 260 n n C8 H82 MYR sing 261 n n C9 C10 MYR sing 262 n n C9 H91 MYR sing 263 n n C9 H92 MYR sing 264 n n C10 C11 MYR sing 265 n n C10 H101 MYR sing 266 n n C10 H102 MYR sing 267 n n C11 C12 MYR sing 268 n n C11 H111 MYR sing 269 n n C11 H112 MYR sing 270 n n C12 C13 MYR sing 271 n n C12 H121 MYR sing 272 n n C12 H122 MYR sing 273 n n C13 C14 MYR sing 274 n n C13 H131 MYR sing 275 n n C13 H132 MYR sing 276 n n C14 H141 MYR sing 277 n n C14 H142 MYR sing 278 n n C14 H143 MYR sing 279 n n # _atom_sites.entry_id 5IFO _atom_sites.fract_transf_matrix[1][1] 0.005522 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001486 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026274 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010907 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RU A 1 601 1 RU RU . C 2 RU A 1 602 2 RU RU . D 3 MYR A 1 603 1001 MYR MYR . E 3 MYR A 1 604 1002 MYR MYR . F 3 MYR A 1 605 1003 MYR MYR . G 3 MYR A 1 606 1004 MYR MYR . H 3 MYR A 1 607 1005 MYR MYR . I 3 MYR A 1 608 1006 MYR MYR . J 4 HOH A 1 701 8 HOH HOH . J 4 HOH A 2 702 6 HOH HOH . J 4 HOH A 3 703 9 HOH HOH . J 4 HOH A 4 704 11 HOH HOH . J 4 HOH A 5 705 7 HOH HOH . J 4 HOH A 6 706 10 HOH HOH . J 4 HOH A 7 707 2 HOH HOH . J 4 HOH A 8 708 4 HOH HOH . J 4 HOH A 9 709 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYR . . . D 3 4.888 3.091 128.177 0.9 62.15 ? C1 MYR 603 A 1 HETATM 2 O O1 MYR . . . D 3 4.243 3.738 127.323 0.9 58.93 ? O1 MYR 603 A 1 HETATM 3 O O2 MYR . . . D 3 4.854 1.842 128.145 0.9 63.21 ? O2 MYR 603 A 1 HETATM 4 C C2 MYR . . . D 3 5.699 3.806 129.23 0.9 63.2 ? C2 MYR 603 A 1 HETATM 5 C C3 MYR . . . D 3 7.149 3.353 129.135 0.9 62.86 ? C3 MYR 603 A 1 HETATM 6 C C4 MYR . . . D 3 8.097 4.546 129.105 0.9 61.91 ? C4 MYR 603 A 1 HETATM 7 C C5 MYR . . . D 3 7.675 5.557 128.046 0.9 60.92 ? C5 MYR 603 A 1 HETATM 8 C C6 MYR . . . D 3 8.877 6.326 127.512 0.9 58.7 ? C6 MYR 603 A 1 HETATM 9 C C7 MYR . . . D 3 9.686 5.466 126.548 0.9 56.25 ? C7 MYR 603 A 1 HETATM 10 C C8 MYR . . . D 3 10.833 6.259 125.934 0.9 52.55 ? C8 MYR 603 A 1 HETATM 11 C C9 MYR . . . D 3 11.561 5.442 124.872 0.9 51.67 ? C9 MYR 603 A 1 HETATM 12 C C10 MYR . . . D 3 10.596 4.995 123.781 0.9 50.17 ? C10 MYR 603 A 1 HETATM 13 C C11 MYR . . . D 3 11.321 4.251 122.668 0.9 46.41 ? C11 MYR 603 A 1 HETATM 14 C C12 MYR . . . D 3 10.344 3.818 121.581 0.9 41.76 ? C12 MYR 603 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 48 _model_server_stats.query_time_ms 535 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #