data_5IFR # _model_server_result.job_id 4u6SlGCmCfFfCQlGn55CKA _model_server_result.datetime_utc '2024-12-08 02:12:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ifr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 5IFR # _exptl.entry_id 5IFR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.78 _cell.angle_gamma 90 _cell.entry_id 5IFR _cell.length_a 42.125 _cell.length_b 52.271 _cell.length_c 53.624 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IFR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5IFR _atom_sites.fract_transf_matrix[1][1] 0.023739 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004519 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019131 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018983 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 201 1 GOL GOL . D 4 HOH A 1 301 74 HOH HOH . D 4 HOH A 2 302 70 HOH HOH . D 4 HOH A 3 303 36 HOH HOH . D 4 HOH A 4 304 19 HOH HOH . D 4 HOH A 5 305 18 HOH HOH . D 4 HOH A 6 306 50 HOH HOH . D 4 HOH A 7 307 79 HOH HOH . D 4 HOH A 8 308 49 HOH HOH . D 4 HOH A 9 309 29 HOH HOH . D 4 HOH A 10 310 1 HOH HOH . D 4 HOH A 11 311 71 HOH HOH . D 4 HOH A 12 312 14 HOH HOH . D 4 HOH A 13 313 17 HOH HOH . D 4 HOH A 14 314 72 HOH HOH . D 4 HOH A 15 315 85 HOH HOH . D 4 HOH A 16 316 15 HOH HOH . D 4 HOH A 17 317 65 HOH HOH . D 4 HOH A 18 318 2 HOH HOH . D 4 HOH A 19 319 68 HOH HOH . D 4 HOH A 20 320 45 HOH HOH . D 4 HOH A 21 321 9 HOH HOH . D 4 HOH A 22 322 37 HOH HOH . D 4 HOH A 23 323 48 HOH HOH . D 4 HOH A 24 324 66 HOH HOH . D 4 HOH A 25 325 7 HOH HOH . D 4 HOH A 26 326 12 HOH HOH . D 4 HOH A 27 327 69 HOH HOH . D 4 HOH A 28 328 13 HOH HOH . D 4 HOH A 29 329 3 HOH HOH . D 4 HOH A 30 330 27 HOH HOH . D 4 HOH A 31 331 39 HOH HOH . D 4 HOH A 32 332 58 HOH HOH . D 4 HOH A 33 333 47 HOH HOH . D 4 HOH A 34 334 30 HOH HOH . D 4 HOH A 35 335 35 HOH HOH . D 4 HOH A 36 336 32 HOH HOH . D 4 HOH A 37 337 10 HOH HOH . D 4 HOH A 38 338 51 HOH HOH . D 4 HOH A 39 339 40 HOH HOH . D 4 HOH A 40 340 5 HOH HOH . D 4 HOH A 41 341 24 HOH HOH . D 4 HOH A 42 342 23 HOH HOH . D 4 HOH A 43 343 56 HOH HOH . D 4 HOH A 44 344 59 HOH HOH . D 4 HOH A 45 345 16 HOH HOH . D 4 HOH A 46 346 26 HOH HOH . D 4 HOH A 47 347 67 HOH HOH . D 4 HOH A 48 348 21 HOH HOH . D 4 HOH A 49 349 53 HOH HOH . D 4 HOH A 50 350 22 HOH HOH . D 4 HOH A 51 351 86 HOH HOH . D 4 HOH A 52 352 60 HOH HOH . D 4 HOH A 53 353 4 HOH HOH . D 4 HOH A 54 354 73 HOH HOH . D 4 HOH A 55 355 75 HOH HOH . D 4 HOH A 56 356 76 HOH HOH . D 4 HOH A 57 357 77 HOH HOH . D 4 HOH A 58 358 54 HOH HOH . D 4 HOH A 59 359 57 HOH HOH . D 4 HOH A 60 360 81 HOH HOH . D 4 HOH A 61 361 28 HOH HOH . D 4 HOH A 62 362 62 HOH HOH . E 4 HOH B 1 101 82 HOH HOH . E 4 HOH B 2 102 11 HOH HOH . E 4 HOH B 3 103 83 HOH HOH . E 4 HOH B 4 104 20 HOH HOH . E 4 HOH B 5 105 64 HOH HOH . E 4 HOH B 6 106 84 HOH HOH . E 4 HOH B 7 107 6 HOH HOH . E 4 HOH B 8 108 87 HOH HOH . E 4 HOH B 9 109 55 HOH HOH . E 4 HOH B 10 110 61 HOH HOH . E 4 HOH B 11 111 33 HOH HOH . E 4 HOH B 12 112 34 HOH HOH . E 4 HOH B 13 113 63 HOH HOH . E 4 HOH B 14 114 44 HOH HOH . E 4 HOH B 15 115 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 6.877 -35.699 19.358 1 65.38 ? C1 GOL 201 A 1 HETATM 2 O O1 GOL . . . C 3 6.003 -35.752 18.253 1 58.99 ? O1 GOL 201 A 1 HETATM 3 C C2 GOL . . . C 3 7.952 -34.647 19.113 1 70.06 ? C2 GOL 201 A 1 HETATM 4 O O2 GOL . . . C 3 8.237 -33.974 20.319 1 72.15 ? O2 GOL 201 A 1 HETATM 5 C C3 GOL . . . C 3 9.22 -35.323 18.605 1 70.25 ? C3 GOL 201 A 1 HETATM 6 O O3 GOL . . . C 3 10.279 -34.391 18.6 1 70.78 ? O3 GOL 201 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #