data_5IG4 # _model_server_result.job_id jzxALXpsbQePSpimnlwZYw _model_server_result.datetime_utc '2024-11-30 01:17:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ig4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":501}' # _entry.id 5IG4 # _exptl.entry_id 5IG4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IG4 _cell.length_a 78.466 _cell.length_b 180.1 _cell.length_c 179.511 _cell.Z_PDB 56 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IG4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetradecameric _pdbx_struct_assembly.oligomeric_count 14 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_657 -x+1,y,-z+5/2 -1 0 0 0 1 0 0 0 -1 78.466 0 448.7775 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 H N N ? 2 I N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5IG4 _atom_sites.fract_transf_matrix[1][1] 0.012744 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005552 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005571 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 GOL B 1 501 2 GOL GOL . I 2 GOL C 1 501 1 GOL GOL . J 3 HOH A 1 501 145 HOH HOH . J 3 HOH A 2 502 59 HOH HOH . J 3 HOH A 3 503 115 HOH HOH . J 3 HOH A 4 504 92 HOH HOH . J 3 HOH A 5 505 14 HOH HOH . J 3 HOH A 6 506 52 HOH HOH . J 3 HOH A 7 507 26 HOH HOH . J 3 HOH A 8 508 73 HOH HOH . J 3 HOH A 9 509 31 HOH HOH . J 3 HOH A 10 510 87 HOH HOH . J 3 HOH A 11 511 5 HOH HOH . J 3 HOH A 12 512 13 HOH HOH . J 3 HOH A 13 513 21 HOH HOH . J 3 HOH A 14 514 67 HOH HOH . J 3 HOH A 15 515 51 HOH HOH . J 3 HOH A 16 516 64 HOH HOH . J 3 HOH A 17 517 146 HOH HOH . J 3 HOH A 18 518 106 HOH HOH . J 3 HOH A 19 519 58 HOH HOH . J 3 HOH A 20 520 112 HOH HOH . J 3 HOH A 21 521 131 HOH HOH . J 3 HOH A 22 522 78 HOH HOH . J 3 HOH A 23 523 11 HOH HOH . J 3 HOH A 24 524 29 HOH HOH . J 3 HOH A 25 525 22 HOH HOH . J 3 HOH A 26 526 44 HOH HOH . J 3 HOH A 27 527 116 HOH HOH . J 3 HOH A 28 528 135 HOH HOH . J 3 HOH A 29 529 71 HOH HOH . J 3 HOH A 30 530 114 HOH HOH . J 3 HOH A 31 531 107 HOH HOH . J 3 HOH A 32 532 77 HOH HOH . J 3 HOH A 33 533 76 HOH HOH . K 3 HOH B 1 601 122 HOH HOH . K 3 HOH B 2 602 86 HOH HOH . K 3 HOH B 3 603 123 HOH HOH . K 3 HOH B 4 604 2 HOH HOH . K 3 HOH B 5 605 100 HOH HOH . K 3 HOH B 6 606 6 HOH HOH . K 3 HOH B 7 607 53 HOH HOH . K 3 HOH B 8 608 70 HOH HOH . K 3 HOH B 9 609 54 HOH HOH . K 3 HOH B 10 610 62 HOH HOH . K 3 HOH B 11 611 105 HOH HOH . K 3 HOH B 12 612 117 HOH HOH . K 3 HOH B 13 613 120 HOH HOH . K 3 HOH B 14 614 46 HOH HOH . K 3 HOH B 15 615 137 HOH HOH . K 3 HOH B 16 616 119 HOH HOH . K 3 HOH B 17 617 126 HOH HOH . K 3 HOH B 18 618 147 HOH HOH . K 3 HOH B 19 619 99 HOH HOH . K 3 HOH B 20 620 144 HOH HOH . L 3 HOH C 1 601 85 HOH HOH . L 3 HOH C 2 602 55 HOH HOH . L 3 HOH C 3 603 140 HOH HOH . L 3 HOH C 4 604 45 HOH HOH . L 3 HOH C 5 605 16 HOH HOH . L 3 HOH C 6 606 12 HOH HOH . L 3 HOH C 7 607 37 HOH HOH . L 3 HOH C 8 608 74 HOH HOH . L 3 HOH C 9 609 3 HOH HOH . L 3 HOH C 10 610 40 HOH HOH . L 3 HOH C 11 611 139 HOH HOH . L 3 HOH C 12 612 79 HOH HOH . L 3 HOH C 13 613 113 HOH HOH . L 3 HOH C 14 614 30 HOH HOH . L 3 HOH C 15 615 80 HOH HOH . L 3 HOH C 16 616 20 HOH HOH . L 3 HOH C 17 617 118 HOH HOH . L 3 HOH C 18 618 89 HOH HOH . L 3 HOH C 19 619 72 HOH HOH . L 3 HOH C 20 620 61 HOH HOH . L 3 HOH C 21 621 94 HOH HOH . L 3 HOH C 22 622 69 HOH HOH . L 3 HOH C 23 623 81 HOH HOH . L 3 HOH C 24 624 98 HOH HOH . M 3 HOH D 1 501 129 HOH HOH . M 3 HOH D 2 502 17 HOH HOH . M 3 HOH D 3 503 47 HOH HOH . M 3 HOH D 4 504 7 HOH HOH . M 3 HOH D 5 505 19 HOH HOH . M 3 HOH D 6 506 136 HOH HOH . M 3 HOH D 7 507 23 HOH HOH . M 3 HOH D 8 508 9 HOH HOH . M 3 HOH D 9 509 18 HOH HOH . M 3 HOH D 10 510 142 HOH HOH . M 3 HOH D 11 511 50 HOH HOH . M 3 HOH D 12 512 49 HOH HOH . M 3 HOH D 13 513 43 HOH HOH . M 3 HOH D 14 514 128 HOH HOH . M 3 HOH D 15 515 90 HOH HOH . M 3 HOH D 16 516 103 HOH HOH . M 3 HOH D 17 517 148 HOH HOH . M 3 HOH D 18 518 143 HOH HOH . N 3 HOH E 1 501 83 HOH HOH . N 3 HOH E 2 502 57 HOH HOH . N 3 HOH E 3 503 10 HOH HOH . N 3 HOH E 4 504 125 HOH HOH . N 3 HOH E 5 505 150 HOH HOH . N 3 HOH E 6 506 27 HOH HOH . N 3 HOH E 7 507 56 HOH HOH . N 3 HOH E 8 508 38 HOH HOH . N 3 HOH E 9 509 39 HOH HOH . N 3 HOH E 10 510 133 HOH HOH . N 3 HOH E 11 511 33 HOH HOH . O 3 HOH F 1 501 124 HOH HOH . O 3 HOH F 2 502 121 HOH HOH . O 3 HOH F 3 503 82 HOH HOH . O 3 HOH F 4 504 4 HOH HOH . O 3 HOH F 5 505 110 HOH HOH . O 3 HOH F 6 506 127 HOH HOH . O 3 HOH F 7 507 25 HOH HOH . O 3 HOH F 8 508 24 HOH HOH . O 3 HOH F 9 509 95 HOH HOH . O 3 HOH F 10 510 151 HOH HOH . O 3 HOH F 11 511 88 HOH HOH . O 3 HOH F 12 512 15 HOH HOH . O 3 HOH F 13 513 102 HOH HOH . O 3 HOH F 14 514 41 HOH HOH . O 3 HOH F 15 515 1 HOH HOH . O 3 HOH F 16 516 111 HOH HOH . O 3 HOH F 17 517 149 HOH HOH . O 3 HOH F 18 518 84 HOH HOH . O 3 HOH F 19 519 32 HOH HOH . O 3 HOH F 20 520 35 HOH HOH . O 3 HOH F 21 521 109 HOH HOH . P 3 HOH G 1 501 101 HOH HOH . P 3 HOH G 2 502 132 HOH HOH . P 3 HOH G 3 503 93 HOH HOH . P 3 HOH G 4 504 134 HOH HOH . P 3 HOH G 5 505 68 HOH HOH . P 3 HOH G 6 506 138 HOH HOH . P 3 HOH G 7 507 91 HOH HOH . P 3 HOH G 8 508 63 HOH HOH . P 3 HOH G 9 509 28 HOH HOH . P 3 HOH G 10 510 75 HOH HOH . P 3 HOH G 11 511 60 HOH HOH . P 3 HOH G 12 512 8 HOH HOH . P 3 HOH G 13 513 36 HOH HOH . P 3 HOH G 14 514 42 HOH HOH . P 3 HOH G 15 515 34 HOH HOH . P 3 HOH G 16 516 97 HOH HOH . P 3 HOH G 17 517 48 HOH HOH . P 3 HOH G 18 518 96 HOH HOH . P 3 HOH G 19 519 65 HOH HOH . P 3 HOH G 20 520 66 HOH HOH . P 3 HOH G 21 521 104 HOH HOH . P 3 HOH G 22 522 130 HOH HOH . P 3 HOH G 23 523 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 2 36.613 73.233 218.961 1 42.78 ? C1 GOL 501 B 1 HETATM 2 O O1 GOL . . . H 2 36.284 73.96 217.794 1 46.34 ? O1 GOL 501 B 1 HETATM 3 C C2 GOL . . . H 2 37.057 74.249 220.038 1 52.87 ? C2 GOL 501 B 1 HETATM 4 O O2 GOL . . . H 2 36.765 73.902 221.384 1 47.15 ? O2 GOL 501 B 1 HETATM 5 C C3 GOL . . . H 2 38.552 74.407 219.884 1 48.84 ? C3 GOL 501 B 1 HETATM 6 O O3 GOL . . . H 2 39.058 75.12 220.989 1 69.59 ? O3 GOL 501 B 1 HETATM 7 H H11 GOL . . . H 2 37.42 72.532 218.75 1 51.34 ? H11 GOL 501 B 1 HETATM 8 H H12 GOL . . . H 2 35.746 72.671 219.309 1 51.34 ? H12 GOL 501 B 1 HETATM 9 H HO1 GOL . . . H 2 36.061 73.336 217.072 1 55.6 ? HO1 GOL 501 B 1 HETATM 10 H H2 GOL . . . H 2 36.592 75.208 219.809 1 63.45 ? H2 GOL 501 B 1 HETATM 11 H HO2 GOL . . . H 2 37.221 73.064 221.611 1 56.58 ? HO2 GOL 501 B 1 HETATM 12 H H31 GOL . . . H 2 38.774 74.945 218.963 1 58.6 ? H31 GOL 501 B 1 HETATM 13 H H32 GOL . . . H 2 39.024 73.426 219.829 1 58.6 ? H32 GOL 501 B 1 HETATM 14 H HO3 GOL . . . H 2 40.036 75.153 220.936 1 83.51 ? HO3 GOL 501 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #