data_5IGZ # _model_server_result.job_id QAru1ASX4uV2q2ihCQSe0Q _model_server_result.datetime_utc '2024-11-24 22:36:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5igz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5IGZ # _exptl.entry_id 5IGZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IGZ _cell.length_a 55.24 _cell.length_b 72.43 _cell.length_c 77.08 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IGZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 219 A ASP 219 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc2 A OD2 ASP 219 A ASP 219 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc3 A OD2 ASP 219 A ASP 219 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc4 B O3B GDP . A GDP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc5 B O1B GDP . A GDP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc6 B O1A GDP . A GDP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc7 C MG MG . A MG 402 1_555 F O HOH . A HOH 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc8 C MG MG . A MG 402 1_555 F O HOH . A HOH 723 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc9 D MG MG . A MG 403 1_555 F O HOH . A HOH 647 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc10 D MG MG . A MG 403 1_555 F O HOH . A HOH 679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? # _chem_comp.formula 'C10 H15 N5 O11 P2' _chem_comp.formula_weight 443.201 _chem_comp.id GDP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B GDP doub 70 n n PB O2B GDP sing 71 n n PB O3B GDP sing 72 n n PB O3A GDP sing 73 n n O2B HOB2 GDP sing 74 n n O3B HOB3 GDP sing 75 n n O3A PA GDP sing 76 n n PA O1A GDP doub 77 n n PA O2A GDP sing 78 n n PA O5' GDP sing 79 n n O2A HOA2 GDP sing 80 n n O5' C5' GDP sing 81 n n C5' C4' GDP sing 82 n n C5' H5' GDP sing 83 n n C5' "H5''" GDP sing 84 n n C4' O4' GDP sing 85 n n C4' C3' GDP sing 86 n n C4' H4' GDP sing 87 n n O4' C1' GDP sing 88 n n C3' O3' GDP sing 89 n n C3' C2' GDP sing 90 n n C3' H3' GDP sing 91 n n O3' HO3' GDP sing 92 n n C2' O2' GDP sing 93 n n C2' C1' GDP sing 94 n n C2' H2' GDP sing 95 n n O2' HO2' GDP sing 96 n n C1' N9 GDP sing 97 n n C1' H1' GDP sing 98 n n N9 C8 GDP sing 99 n y N9 C4 GDP sing 100 n y C8 N7 GDP doub 101 n y C8 H8 GDP sing 102 n n N7 C5 GDP sing 103 n y C5 C6 GDP sing 104 n n C5 C4 GDP doub 105 n y C6 O6 GDP doub 106 n n C6 N1 GDP sing 107 n n N1 C2 GDP sing 108 n n N1 HN1 GDP sing 109 n n C2 N2 GDP sing 110 n n C2 N3 GDP doub 111 n n N2 HN21 GDP sing 112 n n N2 HN22 GDP sing 113 n n N3 C4 GDP sing 114 n n # _atom_sites.entry_id 5IGZ _atom_sites.fract_transf_matrix[1][1] 0.018103 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013806 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012974 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP A 1 401 1 GDP GDP . C 3 MG A 1 402 1 MG MG . D 3 MG A 1 403 2 MG MG . E 4 SPR A 1 404 1 SPR SPR . F 5 HOH A 1 501 384 HOH HOH . F 5 HOH A 2 502 376 HOH HOH . F 5 HOH A 3 503 349 HOH HOH . F 5 HOH A 4 504 172 HOH HOH . F 5 HOH A 5 505 339 HOH HOH . F 5 HOH A 6 506 222 HOH HOH . F 5 HOH A 7 507 318 HOH HOH . F 5 HOH A 8 508 54 HOH HOH . F 5 HOH A 9 509 262 HOH HOH . F 5 HOH A 10 510 287 HOH HOH . F 5 HOH A 11 511 377 HOH HOH . F 5 HOH A 12 512 17 HOH HOH . F 5 HOH A 13 513 378 HOH HOH . F 5 HOH A 14 514 235 HOH HOH . F 5 HOH A 15 515 18 HOH HOH . F 5 HOH A 16 516 275 HOH HOH . F 5 HOH A 17 517 239 HOH HOH . F 5 HOH A 18 518 273 HOH HOH . F 5 HOH A 19 519 271 HOH HOH . F 5 HOH A 20 520 23 HOH HOH . F 5 HOH A 21 521 149 HOH HOH . F 5 HOH A 22 522 153 HOH HOH . F 5 HOH A 23 523 296 HOH HOH . F 5 HOH A 24 524 249 HOH HOH . F 5 HOH A 25 525 291 HOH HOH . F 5 HOH A 26 526 126 HOH HOH . F 5 HOH A 27 527 100 HOH HOH . F 5 HOH A 28 528 292 HOH HOH . F 5 HOH A 29 529 114 HOH HOH . F 5 HOH A 30 530 83 HOH HOH . F 5 HOH A 31 531 38 HOH HOH . F 5 HOH A 32 532 34 HOH HOH . F 5 HOH A 33 533 20 HOH HOH . F 5 HOH A 34 534 98 HOH HOH . F 5 HOH A 35 535 178 HOH HOH . F 5 HOH A 36 536 67 HOH HOH . F 5 HOH A 37 537 366 HOH HOH . F 5 HOH A 38 538 201 HOH HOH . F 5 HOH A 39 539 36 HOH HOH . F 5 HOH A 40 540 139 HOH HOH . F 5 HOH A 41 541 21 HOH HOH . F 5 HOH A 42 542 297 HOH HOH . F 5 HOH A 43 543 24 HOH HOH . F 5 HOH A 44 544 243 HOH HOH . F 5 HOH A 45 545 192 HOH HOH . F 5 HOH A 46 546 173 HOH HOH . F 5 HOH A 47 547 265 HOH HOH . F 5 HOH A 48 548 246 HOH HOH . F 5 HOH A 49 549 46 HOH HOH . F 5 HOH A 50 550 37 HOH HOH . F 5 HOH A 51 551 170 HOH HOH . F 5 HOH A 52 552 259 HOH HOH . F 5 HOH A 53 553 316 HOH HOH . F 5 HOH A 54 554 180 HOH HOH . F 5 HOH A 55 555 122 HOH HOH . F 5 HOH A 56 556 206 HOH HOH . F 5 HOH A 57 557 95 HOH HOH . F 5 HOH A 58 558 277 HOH HOH . F 5 HOH A 59 559 363 HOH HOH . F 5 HOH A 60 560 118 HOH HOH . F 5 HOH A 61 561 295 HOH HOH . F 5 HOH A 62 562 79 HOH HOH . F 5 HOH A 63 563 96 HOH HOH . F 5 HOH A 64 564 301 HOH HOH . F 5 HOH A 65 565 370 HOH HOH . F 5 HOH A 66 566 163 HOH HOH . F 5 HOH A 67 567 157 HOH HOH . F 5 HOH A 68 568 63 HOH HOH . F 5 HOH A 69 569 202 HOH HOH . F 5 HOH A 70 570 159 HOH HOH . F 5 HOH A 71 571 300 HOH HOH . F 5 HOH A 72 572 130 HOH HOH . F 5 HOH A 73 573 219 HOH HOH . F 5 HOH A 74 574 11 HOH HOH . F 5 HOH A 75 575 15 HOH HOH . F 5 HOH A 76 576 337 HOH HOH . F 5 HOH A 77 577 97 HOH HOH . F 5 HOH A 78 578 16 HOH HOH . F 5 HOH A 79 579 9 HOH HOH . F 5 HOH A 80 580 204 HOH HOH . F 5 HOH A 81 581 64 HOH HOH . F 5 HOH A 82 582 185 HOH HOH . F 5 HOH A 83 583 286 HOH HOH . F 5 HOH A 84 584 3 HOH HOH . F 5 HOH A 85 585 99 HOH HOH . F 5 HOH A 86 586 179 HOH HOH . F 5 HOH A 87 587 383 HOH HOH . F 5 HOH A 88 588 41 HOH HOH . F 5 HOH A 89 589 164 HOH HOH . F 5 HOH A 90 590 55 HOH HOH . F 5 HOH A 91 591 212 HOH HOH . F 5 HOH A 92 592 150 HOH HOH . F 5 HOH A 93 593 336 HOH HOH . F 5 HOH A 94 594 84 HOH HOH . F 5 HOH A 95 595 66 HOH HOH . F 5 HOH A 96 596 148 HOH HOH . F 5 HOH A 97 597 25 HOH HOH . F 5 HOH A 98 598 299 HOH HOH . F 5 HOH A 99 599 166 HOH HOH . F 5 HOH A 100 600 361 HOH HOH . F 5 HOH A 101 601 369 HOH HOH . F 5 HOH A 102 602 107 HOH HOH . F 5 HOH A 103 603 31 HOH HOH . F 5 HOH A 104 604 14 HOH HOH . F 5 HOH A 105 605 357 HOH HOH . F 5 HOH A 106 606 321 HOH HOH . F 5 HOH A 107 607 233 HOH HOH . F 5 HOH A 108 608 104 HOH HOH . F 5 HOH A 109 609 7 HOH HOH . F 5 HOH A 110 610 348 HOH HOH . F 5 HOH A 111 611 35 HOH HOH . F 5 HOH A 112 612 329 HOH HOH . F 5 HOH A 113 613 76 HOH HOH . F 5 HOH A 114 614 290 HOH HOH . F 5 HOH A 115 615 32 HOH HOH . F 5 HOH A 116 616 258 HOH HOH . F 5 HOH A 117 617 373 HOH HOH . F 5 HOH A 118 618 19 HOH HOH . F 5 HOH A 119 619 30 HOH HOH . F 5 HOH A 120 620 12 HOH HOH . F 5 HOH A 121 621 65 HOH HOH . F 5 HOH A 122 622 335 HOH HOH . F 5 HOH A 123 623 310 HOH HOH . F 5 HOH A 124 624 45 HOH HOH . F 5 HOH A 125 625 294 HOH HOH . F 5 HOH A 126 626 231 HOH HOH . F 5 HOH A 127 627 81 HOH HOH . F 5 HOH A 128 628 27 HOH HOH . F 5 HOH A 129 629 161 HOH HOH . F 5 HOH A 130 630 116 HOH HOH . F 5 HOH A 131 631 121 HOH HOH . F 5 HOH A 132 632 43 HOH HOH . F 5 HOH A 133 633 48 HOH HOH . F 5 HOH A 134 634 105 HOH HOH . F 5 HOH A 135 635 112 HOH HOH . F 5 HOH A 136 636 85 HOH HOH . F 5 HOH A 137 637 198 HOH HOH . F 5 HOH A 138 638 183 HOH HOH . F 5 HOH A 139 639 10 HOH HOH . F 5 HOH A 140 640 133 HOH HOH . F 5 HOH A 141 641 103 HOH HOH . F 5 HOH A 142 642 8 HOH HOH . F 5 HOH A 143 643 162 HOH HOH . F 5 HOH A 144 644 26 HOH HOH . F 5 HOH A 145 645 61 HOH HOH . F 5 HOH A 146 646 241 HOH HOH . F 5 HOH A 147 647 5 HOH HOH . F 5 HOH A 148 648 22 HOH HOH . F 5 HOH A 149 649 28 HOH HOH . F 5 HOH A 150 650 317 HOH HOH . F 5 HOH A 151 651 188 HOH HOH . F 5 HOH A 152 652 263 HOH HOH . F 5 HOH A 153 653 147 HOH HOH . F 5 HOH A 154 654 93 HOH HOH . F 5 HOH A 155 655 106 HOH HOH . F 5 HOH A 156 656 342 HOH HOH . F 5 HOH A 157 657 359 HOH HOH . F 5 HOH A 158 658 124 HOH HOH . F 5 HOH A 159 659 282 HOH HOH . F 5 HOH A 160 660 71 HOH HOH . F 5 HOH A 161 661 108 HOH HOH . F 5 HOH A 162 662 340 HOH HOH . F 5 HOH A 163 663 50 HOH HOH . F 5 HOH A 164 664 70 HOH HOH . F 5 HOH A 165 665 151 HOH HOH . F 5 HOH A 166 666 247 HOH HOH . F 5 HOH A 167 667 248 HOH HOH . F 5 HOH A 168 668 280 HOH HOH . F 5 HOH A 169 669 274 HOH HOH . F 5 HOH A 170 670 207 HOH HOH . F 5 HOH A 171 671 2 HOH HOH . F 5 HOH A 172 672 56 HOH HOH . F 5 HOH A 173 673 319 HOH HOH . F 5 HOH A 174 674 69 HOH HOH . F 5 HOH A 175 675 68 HOH HOH . F 5 HOH A 176 676 312 HOH HOH . F 5 HOH A 177 677 44 HOH HOH . F 5 HOH A 178 678 113 HOH HOH . F 5 HOH A 179 679 4 HOH HOH . F 5 HOH A 180 680 78 HOH HOH . F 5 HOH A 181 681 109 HOH HOH . F 5 HOH A 182 682 74 HOH HOH . F 5 HOH A 183 683 200 HOH HOH . F 5 HOH A 184 684 120 HOH HOH . F 5 HOH A 185 685 304 HOH HOH . F 5 HOH A 186 686 266 HOH HOH . F 5 HOH A 187 687 86 HOH HOH . F 5 HOH A 188 688 117 HOH HOH . F 5 HOH A 189 689 75 HOH HOH . F 5 HOH A 190 690 62 HOH HOH . F 5 HOH A 191 691 87 HOH HOH . F 5 HOH A 192 692 242 HOH HOH . F 5 HOH A 193 693 353 HOH HOH . F 5 HOH A 194 694 209 HOH HOH . F 5 HOH A 195 695 119 HOH HOH . F 5 HOH A 196 696 132 HOH HOH . F 5 HOH A 197 697 90 HOH HOH . F 5 HOH A 198 698 261 HOH HOH . F 5 HOH A 199 699 29 HOH HOH . F 5 HOH A 200 700 234 HOH HOH . F 5 HOH A 201 701 59 HOH HOH . F 5 HOH A 202 702 13 HOH HOH . F 5 HOH A 203 703 6 HOH HOH . F 5 HOH A 204 704 40 HOH HOH . F 5 HOH A 205 705 356 HOH HOH . F 5 HOH A 206 706 57 HOH HOH . F 5 HOH A 207 707 253 HOH HOH . F 5 HOH A 208 708 53 HOH HOH . F 5 HOH A 209 709 165 HOH HOH . F 5 HOH A 210 710 203 HOH HOH . F 5 HOH A 211 711 191 HOH HOH . F 5 HOH A 212 712 171 HOH HOH . F 5 HOH A 213 713 152 HOH HOH . F 5 HOH A 214 714 251 HOH HOH . F 5 HOH A 215 715 223 HOH HOH . F 5 HOH A 216 716 131 HOH HOH . F 5 HOH A 217 717 158 HOH HOH . F 5 HOH A 218 718 92 HOH HOH . F 5 HOH A 219 719 72 HOH HOH . F 5 HOH A 220 720 368 HOH HOH . F 5 HOH A 221 721 210 HOH HOH . F 5 HOH A 222 722 110 HOH HOH . F 5 HOH A 223 723 281 HOH HOH . F 5 HOH A 224 724 140 HOH HOH . F 5 HOH A 225 725 196 HOH HOH . F 5 HOH A 226 726 306 HOH HOH . F 5 HOH A 227 727 51 HOH HOH . F 5 HOH A 228 728 220 HOH HOH . F 5 HOH A 229 729 80 HOH HOH . F 5 HOH A 230 730 33 HOH HOH . F 5 HOH A 231 731 186 HOH HOH . F 5 HOH A 232 732 143 HOH HOH . F 5 HOH A 233 733 89 HOH HOH . F 5 HOH A 234 734 229 HOH HOH . F 5 HOH A 235 735 338 HOH HOH . F 5 HOH A 236 736 128 HOH HOH . F 5 HOH A 237 737 193 HOH HOH . F 5 HOH A 238 738 123 HOH HOH . F 5 HOH A 239 739 175 HOH HOH . F 5 HOH A 240 740 270 HOH HOH . F 5 HOH A 241 741 326 HOH HOH . F 5 HOH A 242 742 195 HOH HOH . F 5 HOH A 243 743 127 HOH HOH . F 5 HOH A 244 744 237 HOH HOH . F 5 HOH A 245 745 49 HOH HOH . F 5 HOH A 246 746 167 HOH HOH . F 5 HOH A 247 747 240 HOH HOH . F 5 HOH A 248 748 221 HOH HOH . F 5 HOH A 249 749 190 HOH HOH . F 5 HOH A 250 750 309 HOH HOH . F 5 HOH A 251 751 168 HOH HOH . F 5 HOH A 252 752 154 HOH HOH . F 5 HOH A 253 753 177 HOH HOH . F 5 HOH A 254 754 58 HOH HOH . F 5 HOH A 255 755 283 HOH HOH . F 5 HOH A 256 756 293 HOH HOH . F 5 HOH A 257 757 362 HOH HOH . F 5 HOH A 258 758 138 HOH HOH . F 5 HOH A 259 759 226 HOH HOH . F 5 HOH A 260 760 372 HOH HOH . F 5 HOH A 261 761 1 HOH HOH . F 5 HOH A 262 762 341 HOH HOH . F 5 HOH A 263 763 352 HOH HOH . F 5 HOH A 264 764 181 HOH HOH . F 5 HOH A 265 765 115 HOH HOH . F 5 HOH A 266 766 42 HOH HOH . F 5 HOH A 267 767 360 HOH HOH . F 5 HOH A 268 768 82 HOH HOH . F 5 HOH A 269 769 330 HOH HOH . F 5 HOH A 270 770 194 HOH HOH . F 5 HOH A 271 771 101 HOH HOH . F 5 HOH A 272 772 145 HOH HOH . F 5 HOH A 273 773 189 HOH HOH . F 5 HOH A 274 774 307 HOH HOH . F 5 HOH A 275 775 365 HOH HOH . F 5 HOH A 276 776 279 HOH HOH . F 5 HOH A 277 777 334 HOH HOH . F 5 HOH A 278 778 214 HOH HOH . F 5 HOH A 279 779 379 HOH HOH . F 5 HOH A 280 780 311 HOH HOH . F 5 HOH A 281 781 232 HOH HOH . F 5 HOH A 282 782 199 HOH HOH . F 5 HOH A 283 783 260 HOH HOH . F 5 HOH A 284 784 250 HOH HOH . F 5 HOH A 285 785 144 HOH HOH . F 5 HOH A 286 786 382 HOH HOH . F 5 HOH A 287 787 375 HOH HOH . F 5 HOH A 288 788 135 HOH HOH . F 5 HOH A 289 789 346 HOH HOH . F 5 HOH A 290 790 102 HOH HOH . F 5 HOH A 291 791 344 HOH HOH . F 5 HOH A 292 792 217 HOH HOH . F 5 HOH A 293 793 254 HOH HOH . F 5 HOH A 294 794 60 HOH HOH . F 5 HOH A 295 795 322 HOH HOH . F 5 HOH A 296 796 354 HOH HOH . F 5 HOH A 297 797 267 HOH HOH . F 5 HOH A 298 798 211 HOH HOH . F 5 HOH A 299 799 218 HOH HOH . F 5 HOH A 300 800 285 HOH HOH . F 5 HOH A 301 801 184 HOH HOH . F 5 HOH A 302 802 256 HOH HOH . F 5 HOH A 303 803 380 HOH HOH . F 5 HOH A 304 804 314 HOH HOH . F 5 HOH A 305 805 289 HOH HOH . F 5 HOH A 306 806 350 HOH HOH . F 5 HOH A 307 807 305 HOH HOH . F 5 HOH A 308 808 236 HOH HOH . F 5 HOH A 309 809 303 HOH HOH . F 5 HOH A 310 810 302 HOH HOH . F 5 HOH A 311 811 225 HOH HOH . F 5 HOH A 312 812 381 HOH HOH . F 5 HOH A 313 813 345 HOH HOH . F 5 HOH A 314 814 332 HOH HOH . F 5 HOH A 315 815 142 HOH HOH . F 5 HOH A 316 816 278 HOH HOH . F 5 HOH A 317 817 156 HOH HOH . F 5 HOH A 318 818 315 HOH HOH . F 5 HOH A 319 819 257 HOH HOH . F 5 HOH A 320 820 137 HOH HOH . F 5 HOH A 321 821 269 HOH HOH . F 5 HOH A 322 822 324 HOH HOH . F 5 HOH A 323 823 333 HOH HOH . F 5 HOH A 324 824 367 HOH HOH . F 5 HOH A 325 825 39 HOH HOH . F 5 HOH A 326 826 47 HOH HOH . F 5 HOH A 327 827 320 HOH HOH . F 5 HOH A 328 828 136 HOH HOH . F 5 HOH A 329 829 238 HOH HOH . F 5 HOH A 330 830 182 HOH HOH . F 5 HOH A 331 831 230 HOH HOH . F 5 HOH A 332 832 213 HOH HOH . F 5 HOH A 333 833 197 HOH HOH . F 5 HOH A 334 834 169 HOH HOH . F 5 HOH A 335 835 358 HOH HOH . F 5 HOH A 336 836 351 HOH HOH . F 5 HOH A 337 837 111 HOH HOH . F 5 HOH A 338 838 325 HOH HOH . F 5 HOH A 339 839 371 HOH HOH . F 5 HOH A 340 840 255 HOH HOH . F 5 HOH A 341 841 141 HOH HOH . F 5 HOH A 342 842 244 HOH HOH . F 5 HOH A 343 843 308 HOH HOH . F 5 HOH A 344 844 268 HOH HOH . F 5 HOH A 345 845 88 HOH HOH . F 5 HOH A 346 846 146 HOH HOH . F 5 HOH A 347 847 288 HOH HOH . F 5 HOH A 348 848 160 HOH HOH . F 5 HOH A 349 849 215 HOH HOH . F 5 HOH A 350 850 364 HOH HOH . F 5 HOH A 351 851 94 HOH HOH . F 5 HOH A 352 852 272 HOH HOH . F 5 HOH A 353 853 129 HOH HOH . F 5 HOH A 354 854 216 HOH HOH . F 5 HOH A 355 855 276 HOH HOH . F 5 HOH A 356 856 91 HOH HOH . F 5 HOH A 357 857 328 HOH HOH . F 5 HOH A 358 858 227 HOH HOH . F 5 HOH A 359 859 77 HOH HOH . F 5 HOH A 360 860 224 HOH HOH . F 5 HOH A 361 861 245 HOH HOH . F 5 HOH A 362 862 52 HOH HOH . F 5 HOH A 363 863 125 HOH HOH . F 5 HOH A 364 864 73 HOH HOH . F 5 HOH A 365 865 374 HOH HOH . F 5 HOH A 366 866 174 HOH HOH . F 5 HOH A 367 867 331 HOH HOH . F 5 HOH A 368 868 323 HOH HOH . F 5 HOH A 369 869 176 HOH HOH . F 5 HOH A 370 870 134 HOH HOH . F 5 HOH A 371 871 385 HOH HOH . F 5 HOH A 372 872 187 HOH HOH . F 5 HOH A 373 873 313 HOH HOH . F 5 HOH A 374 874 327 HOH HOH . F 5 HOH A 375 875 343 HOH HOH . F 5 HOH A 376 876 347 HOH HOH . F 5 HOH A 377 877 284 HOH HOH . F 5 HOH A 378 878 208 HOH HOH . F 5 HOH A 379 879 355 HOH HOH . F 5 HOH A 380 880 264 HOH HOH . F 5 HOH A 381 881 155 HOH HOH . F 5 HOH A 382 882 205 HOH HOH . F 5 HOH A 383 883 228 HOH HOH . F 5 HOH A 384 884 298 HOH HOH . F 5 HOH A 385 885 252 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB GDP . . . B 2 -3.926 10.738 -13.222 1 16.81 ? PB GDP 401 A 1 HETATM 2 O O1B GDP . . . B 2 -4.405 11.75 -14.232 1 18.68 ? O1B GDP 401 A 1 HETATM 3 O O2B GDP . . . B 2 -2.989 11.378 -12.202 1 17.88 ? O2B GDP 401 A 1 HETATM 4 O O3B GDP . . . B 2 -5.142 10.007 -12.592 1 16.11 ? O3B GDP 401 A 1 HETATM 5 O O3A GDP . . . B 2 -3 9.679 -13.983 1 14.93 ? O3A GDP 401 A 1 HETATM 6 P PA GDP . . . B 2 -3.062 8.993 -15.438 1 16.33 ? PA GDP 401 A 1 HETATM 7 O O1A GDP . . . B 2 -3.745 9.965 -16.361 1 15.17 ? O1A GDP 401 A 1 HETATM 8 O O2A GDP . . . B 2 -3.569 7.582 -15.356 1 17.27 ? O2A GDP 401 A 1 HETATM 9 O O5' GDP . . . B 2 -1.492 8.907 -15.829 1 15.74 ? O5' GDP 401 A 1 HETATM 10 C C5' GDP . . . B 2 -0.691 10.059 -15.698 1 15.96 ? C5' GDP 401 A 1 HETATM 11 C C4' GDP . . . B 2 -0.019 10.412 -17.013 1 16.07 ? C4' GDP 401 A 1 HETATM 12 O O4' GDP . . . B 2 0.784 9.307 -17.429 1 15.02 ? O4' GDP 401 A 1 HETATM 13 C C3' GDP . . . B 2 -0.981 10.699 -18.148 1 16.71 ? C3' GDP 401 A 1 HETATM 14 O O3' GDP . . . B 2 -1.45 12.037 -18.114 1 17.55 ? O3' GDP 401 A 1 HETATM 15 C C2' GDP . . . B 2 -0.125 10.434 -19.359 1 13.53 ? C2' GDP 401 A 1 HETATM 16 O O2' GDP . . . B 2 0.645 11.58 -19.723 1 17.61 ? O2' GDP 401 A 1 HETATM 17 C C1' GDP . . . B 2 0.82 9.328 -18.855 1 15.91 ? C1' GDP 401 A 1 HETATM 18 N N9 GDP . . . B 2 0.445 7.976 -19.295 1 17.14 ? N9 GDP 401 A 1 HETATM 19 C C8 GDP . . . B 2 -0.153 6.997 -18.554 1 15.25 ? C8 GDP 401 A 1 HETATM 20 N N7 GDP . . . B 2 -0.35 5.875 -19.289 1 17.05 ? N7 GDP 401 A 1 HETATM 21 C C5 GDP . . . B 2 0.128 6.167 -20.517 1 16.36 ? C5 GDP 401 A 1 HETATM 22 C C6 GDP . . . B 2 0.243 5.44 -21.79 1 17.77 ? C6 GDP 401 A 1 HETATM 23 O O6 GDP . . . B 2 -0.17 4.261 -21.858 1 18.55 ? O6 GDP 401 A 1 HETATM 24 N N1 GDP . . . B 2 0.851 6.122 -22.818 1 19.57 ? N1 GDP 401 A 1 HETATM 25 C C2 GDP . . . B 2 1.325 7.384 -22.704 1 19.72 ? C2 GDP 401 A 1 HETATM 26 N N2 GDP . . . B 2 1.91 8.008 -23.759 1 19.51 ? N2 GDP 401 A 1 HETATM 27 N N3 GDP . . . B 2 1.241 8.107 -21.571 1 16.77 ? N3 GDP 401 A 1 HETATM 28 C C4 GDP . . . B 2 0.659 7.505 -20.508 1 15.08 ? C4 GDP 401 A 1 HETATM 29 H H5' GDP . . . B 2 -1.309 10.897 -15.369 1 19.12 ? H5' GDP 401 A 1 HETATM 30 H "H5''" GDP . . . B 2 0.072 9.886 -14.935 1 19.12 ? "H5''" GDP 401 A 1 HETATM 31 H H4' GDP . . . B 2 0.615 11.295 -16.858 1 19.26 ? H4' GDP 401 A 1 HETATM 32 H H3' GDP . . . B 2 -1.816 9.985 -18.119 1 20.03 ? H3' GDP 401 A 1 HETATM 33 H HO3' GDP . . . B 2 -2.047 12.188 -18.86 1 21.03 ? HO3' GDP 401 A 1 HETATM 34 H H2' GDP . . . B 2 -0.737 10.068 -20.194 1 16.21 ? H2' GDP 401 A 1 HETATM 35 H HO2' GDP . . . B 2 0.052 12.298 -19.983 1 21.11 ? HO2' GDP 401 A 1 HETATM 36 H H1' GDP . . . B 2 1.84 9.558 -19.196 1 19.07 ? H1' GDP 401 A 1 HETATM 37 H H8 GDP . . . B 2 -0.456 7.112 -17.521 1 18.28 ? H8 GDP 401 A 1 HETATM 38 H HN1 GDP . . . B 2 0.965 5.635 -23.73 1 23.46 ? HN1 GDP 401 A 1 HETATM 39 H HN21 GDP . . . B 2 2.242 8.957 -23.663 1 23.38 ? HN21 GDP 401 A 1 HETATM 40 H HN22 GDP . . . B 2 2 7.529 -24.643 1 23.38 ? HN22 GDP 401 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 50 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 1142 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 40 #