data_5IH2 # _model_server_result.job_id AW8wSSf4etXm_V2BDFzNpA _model_server_result.datetime_utc '2025-04-28 06:34:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ih2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":201}' # _entry.id 5IH2 # _exptl.entry_id 5IH2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 162.227 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.31 _cell.angle_gamma 90 _cell.entry_id 5IH2 _cell.length_a 45.222 _cell.length_b 29.479 _cell.length_c 45.756 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IH2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,L,N 1 1 B,D,I,J,K,M,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C ACE 1 M ACE -1 1_555 C N TYR 2 M TYR 0 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale2 C C ARG 11 M ARG 9 1_555 C N NH2 12 M NH2 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.49 ? covale ? covale3 D C ACE 1 N ACE -1 1_555 D N TYR 2 N TYR 0 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? covale ? covale4 D C ARG 11 N ARG 9 1_555 D N NH2 12 N NH2 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.295 ? metalc ? metalc1 A O ALA 1 A ALA 134 1_555 G NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc2 A O ARG 46 A ARG 179 1_555 F NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc3 F NA NA . A NA 202 1_555 L O HOH . A HOH 305 1_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc4 F NA NA . A NA 202 1_555 L O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc5 F NA NA . A NA 202 1_555 M O HOH . B HOH 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc6 G NA NA . A NA 203 1_555 L O HOH . A HOH 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? metalc ? metalc7 G NA NA . A NA 203 1_555 L O HOH . A HOH 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc8 G NA NA . A NA 203 1_555 L O HOH . A HOH 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc9 G NA NA . A NA 203 1_555 L O HOH . A HOH 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc10 G NA NA . A NA 203 1_555 M O HOH . B HOH 342 1_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc11 G NA NA . A NA 203 1_555 M O HOH . B HOH 350 1_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc12 H NA NA . A NA 204 1_555 N O HOH . M HOH 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.11 ? metalc ? metalc13 B O GLY 12 B GLY 145 1_555 J NA NA . B NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc14 B O ASP 14 B ASP 147 1_555 J NA NA . B NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc15 B O ASP 17 B ASP 150 1_555 J NA NA . B NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc16 J NA NA . B NA 202 1_555 M O HOH . B HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc17 J NA NA . B NA 202 1_555 M O HOH . B HOH 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? # _chem_comp.formula 'C8 H18 O3' _chem_comp.formula_weight 162.227 _chem_comp.id P4G _chem_comp.mon_nstd_flag . _chem_comp.name 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C7 P4G sing 211 n n C8 H81 P4G sing 212 n n C8 H82 P4G sing 213 n n C8 H83 P4G sing 214 n n C7 O4 P4G sing 215 n n C7 H71 P4G sing 216 n n C7 H72 P4G sing 217 n n O4 C6 P4G sing 218 n n C6 C5 P4G sing 219 n n C6 H61 P4G sing 220 n n C6 H62 P4G sing 221 n n C5 O3 P4G sing 222 n n C5 H51 P4G sing 223 n n C5 H52 P4G sing 224 n n O3 C4 P4G sing 225 n n C4 C3 P4G sing 226 n n C4 H41 P4G sing 227 n n C4 H42 P4G sing 228 n n C3 O2 P4G sing 229 n n C3 H31 P4G sing 230 n n C3 H32 P4G sing 231 n n O2 C2 P4G sing 232 n n C2 C1 P4G sing 233 n n C2 H21 P4G sing 234 n n C2 H22 P4G sing 235 n n C1 H11 P4G sing 236 n n C1 H12 P4G sing 237 n n C1 H13 P4G sing 238 n n # _atom_sites.entry_id 5IH2 _atom_sites.fract_transf_matrix[1][1] 0.022113 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001668 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.033922 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021917 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 PEG A 1 201 1439 PEG PEG . F 4 NA A 1 202 1 NA NA . G 4 NA A 1 203 3 NA NA . H 4 NA A 1 204 6 NA NA . I 5 P4G B 1 201 1440 P4G PEG . J 4 NA B 1 202 9 NA NA . K 5 P4G N 1 101 1441 P4G PEG . L 6 HOH A 1 301 95 HOH HOH . L 6 HOH A 2 302 24 HOH HOH . L 6 HOH A 3 303 40 HOH HOH . L 6 HOH A 4 304 145 HOH HOH . L 6 HOH A 5 305 80 HOH HOH . L 6 HOH A 6 306 106 HOH HOH . L 6 HOH A 7 307 32 HOH HOH . L 6 HOH A 8 308 102 HOH HOH . L 6 HOH A 9 309 151 HOH HOH . L 6 HOH A 10 310 23 HOH HOH . L 6 HOH A 11 311 147 HOH HOH . L 6 HOH A 12 312 125 HOH HOH . L 6 HOH A 13 313 122 HOH HOH . L 6 HOH A 14 314 99 HOH HOH . L 6 HOH A 15 315 119 HOH HOH . L 6 HOH A 16 316 43 HOH HOH . L 6 HOH A 17 317 4 HOH HOH . L 6 HOH A 18 318 25 HOH HOH . L 6 HOH A 19 319 143 HOH HOH . L 6 HOH A 20 320 101 HOH HOH . L 6 HOH A 21 321 149 HOH HOH . L 6 HOH A 22 322 9 HOH HOH . L 6 HOH A 23 323 39 HOH HOH . L 6 HOH A 24 324 15 HOH HOH . L 6 HOH A 25 325 67 HOH HOH . L 6 HOH A 26 326 142 HOH HOH . L 6 HOH A 27 327 131 HOH HOH . L 6 HOH A 28 328 28 HOH HOH . L 6 HOH A 29 329 49 HOH HOH . L 6 HOH A 30 330 56 HOH HOH . L 6 HOH A 31 331 155 HOH HOH . L 6 HOH A 32 332 174 HOH HOH . L 6 HOH A 33 333 5 HOH HOH . L 6 HOH A 34 334 52 HOH HOH . L 6 HOH A 35 335 20 HOH HOH . L 6 HOH A 36 336 107 HOH HOH . L 6 HOH A 37 337 61 HOH HOH . L 6 HOH A 38 338 7 HOH HOH . L 6 HOH A 39 339 48 HOH HOH . L 6 HOH A 40 340 64 HOH HOH . L 6 HOH A 41 341 164 HOH HOH . L 6 HOH A 42 342 41 HOH HOH . L 6 HOH A 43 343 161 HOH HOH . L 6 HOH A 44 344 109 HOH HOH . L 6 HOH A 45 345 53 HOH HOH . L 6 HOH A 46 346 16 HOH HOH . L 6 HOH A 47 347 45 HOH HOH . L 6 HOH A 48 348 18 HOH HOH . L 6 HOH A 49 349 59 HOH HOH . L 6 HOH A 50 350 71 HOH HOH . L 6 HOH A 51 351 26 HOH HOH . L 6 HOH A 52 352 57 HOH HOH . L 6 HOH A 53 353 38 HOH HOH . L 6 HOH A 54 354 144 HOH HOH . L 6 HOH A 55 355 166 HOH HOH . L 6 HOH A 56 356 11 HOH HOH . L 6 HOH A 57 357 93 HOH HOH . L 6 HOH A 58 358 104 HOH HOH . L 6 HOH A 59 359 2 HOH HOH . L 6 HOH A 60 360 66 HOH HOH . L 6 HOH A 61 361 55 HOH HOH . L 6 HOH A 62 362 103 HOH HOH . L 6 HOH A 63 363 159 HOH HOH . L 6 HOH A 64 364 133 HOH HOH . L 6 HOH A 65 365 180 HOH HOH . L 6 HOH A 66 366 74 HOH HOH . L 6 HOH A 67 367 90 HOH HOH . L 6 HOH A 68 368 117 HOH HOH . L 6 HOH A 69 369 175 HOH HOH . L 6 HOH A 70 370 75 HOH HOH . L 6 HOH A 71 371 96 HOH HOH . L 6 HOH A 72 372 54 HOH HOH . L 6 HOH A 73 373 165 HOH HOH . L 6 HOH A 74 374 120 HOH HOH . L 6 HOH A 75 375 171 HOH HOH . L 6 HOH A 76 376 127 HOH HOH . L 6 HOH A 77 377 58 HOH HOH . L 6 HOH A 78 378 170 HOH HOH . L 6 HOH A 79 379 173 HOH HOH . L 6 HOH A 80 380 87 HOH HOH . L 6 HOH A 81 381 163 HOH HOH . L 6 HOH A 82 382 111 HOH HOH . L 6 HOH A 83 383 108 HOH HOH . M 6 HOH B 1 301 136 HOH HOH . M 6 HOH B 2 302 112 HOH HOH . M 6 HOH B 3 303 44 HOH HOH . M 6 HOH B 4 304 36 HOH HOH . M 6 HOH B 5 305 21 HOH HOH . M 6 HOH B 6 306 27 HOH HOH . M 6 HOH B 7 307 148 HOH HOH . M 6 HOH B 8 308 179 HOH HOH . M 6 HOH B 9 309 123 HOH HOH . M 6 HOH B 10 310 14 HOH HOH . M 6 HOH B 11 311 35 HOH HOH . M 6 HOH B 12 312 137 HOH HOH . M 6 HOH B 13 313 46 HOH HOH . M 6 HOH B 14 314 128 HOH HOH . M 6 HOH B 15 315 146 HOH HOH . M 6 HOH B 16 316 30 HOH HOH . M 6 HOH B 17 317 51 HOH HOH . M 6 HOH B 18 318 115 HOH HOH . M 6 HOH B 19 319 19 HOH HOH . M 6 HOH B 20 320 157 HOH HOH . M 6 HOH B 21 321 169 HOH HOH . M 6 HOH B 22 322 114 HOH HOH . M 6 HOH B 23 323 92 HOH HOH . M 6 HOH B 24 324 138 HOH HOH . M 6 HOH B 25 325 176 HOH HOH . M 6 HOH B 26 326 63 HOH HOH . M 6 HOH B 27 327 167 HOH HOH . M 6 HOH B 28 328 153 HOH HOH . M 6 HOH B 29 329 13 HOH HOH . M 6 HOH B 30 330 154 HOH HOH . M 6 HOH B 31 331 22 HOH HOH . M 6 HOH B 32 332 105 HOH HOH . M 6 HOH B 33 333 129 HOH HOH . M 6 HOH B 34 334 100 HOH HOH . M 6 HOH B 35 335 50 HOH HOH . M 6 HOH B 36 336 31 HOH HOH . M 6 HOH B 37 337 134 HOH HOH . M 6 HOH B 38 338 17 HOH HOH . M 6 HOH B 39 339 6 HOH HOH . M 6 HOH B 40 340 158 HOH HOH . M 6 HOH B 41 341 47 HOH HOH . M 6 HOH B 42 342 150 HOH HOH . M 6 HOH B 43 343 29 HOH HOH . M 6 HOH B 44 344 79 HOH HOH . M 6 HOH B 45 345 140 HOH HOH . M 6 HOH B 46 346 8 HOH HOH . M 6 HOH B 47 347 12 HOH HOH . M 6 HOH B 48 348 178 HOH HOH . M 6 HOH B 49 349 65 HOH HOH . M 6 HOH B 50 350 181 HOH HOH . M 6 HOH B 51 351 172 HOH HOH . M 6 HOH B 52 352 121 HOH HOH . M 6 HOH B 53 353 81 HOH HOH . M 6 HOH B 54 354 91 HOH HOH . M 6 HOH B 55 355 77 HOH HOH . M 6 HOH B 56 356 97 HOH HOH . M 6 HOH B 57 357 78 HOH HOH . M 6 HOH B 58 358 94 HOH HOH . M 6 HOH B 59 359 72 HOH HOH . M 6 HOH B 60 360 110 HOH HOH . M 6 HOH B 61 361 132 HOH HOH . N 6 HOH M 1 101 152 HOH HOH . N 6 HOH M 2 102 34 HOH HOH . N 6 HOH M 3 103 126 HOH HOH . N 6 HOH M 4 104 141 HOH HOH . N 6 HOH M 5 105 168 HOH HOH . N 6 HOH M 6 106 82 HOH HOH . N 6 HOH M 7 107 42 HOH HOH . N 6 HOH M 8 108 83 HOH HOH . N 6 HOH M 9 109 85 HOH HOH . N 6 HOH M 10 110 116 HOH HOH . N 6 HOH M 11 111 156 HOH HOH . N 6 HOH M 12 112 3 HOH HOH . N 6 HOH M 13 113 98 HOH HOH . N 6 HOH M 14 114 73 HOH HOH . N 6 HOH M 15 115 86 HOH HOH . N 6 HOH M 16 116 62 HOH HOH . N 6 HOH M 17 117 33 HOH HOH . N 6 HOH M 18 118 177 HOH HOH . N 6 HOH M 19 119 124 HOH HOH . N 6 HOH M 20 120 84 HOH HOH . N 6 HOH M 21 121 118 HOH HOH . O 6 HOH N 1 201 89 HOH HOH . O 6 HOH N 2 202 60 HOH HOH . O 6 HOH N 3 203 113 HOH HOH . O 6 HOH N 4 204 76 HOH HOH . O 6 HOH N 5 205 10 HOH HOH . O 6 HOH N 6 206 130 HOH HOH . O 6 HOH N 7 207 88 HOH HOH . O 6 HOH N 8 208 37 HOH HOH . O 6 HOH N 9 209 135 HOH HOH . O 6 HOH N 10 210 69 HOH HOH . O 6 HOH N 11 211 162 HOH HOH . O 6 HOH N 12 212 70 HOH HOH . O 6 HOH N 13 213 1 HOH HOH . O 6 HOH N 14 214 68 HOH HOH . O 6 HOH N 15 215 160 HOH HOH . O 6 HOH N 16 216 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 P4G . . . I 5 7.276 2.329 -22.803 1 31.23 ? C8 P4G 201 B 1 HETATM 2 C C7 P4G . . . I 5 8.008 2.17 -21.459 1 31.88 ? C7 P4G 201 B 1 HETATM 3 O O4 P4G . . . I 5 7.145 1.882 -20.439 0.5 24.59 ? O4 P4G 201 B 1 HETATM 4 C C6 P4G . . . I 5 7.389 0.845 -19.593 0.5 24.38 ? C6 P4G 201 B 1 HETATM 5 C C5 P4G . . . I 5 6.039 0.247 -19.434 0.5 24.05 ? C5 P4G 201 B 1 HETATM 6 O O3 P4G . . . I 5 6.096 -0.937 -18.827 0.5 28.62 ? O3 P4G 201 B 1 HETATM 7 C C4 P4G . . . I 5 5.346 -1.838 -19.584 0.5 26.13 ? C4 P4G 201 B 1 HETATM 8 C C3 P4G . . . I 5 3.85 -1.554 -19.658 0.5 25.1 ? C3 P4G 201 B 1 HETATM 9 O O2 P4G . . . I 5 3.367 -1.645 -20.949 0.5 24.86 ? O2 P4G 201 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 467 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #