data_5II2 # _model_server_result.job_id oHoZfNogqg2K3XUSoVX2hw _model_server_result.datetime_utc '2024-11-19 08:48:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ii2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":803}' # _entry.id 5II2 # _exptl.entry_id 5II2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 286.236 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4H-chromen-4-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5II2 _cell.length_a 41.52 _cell.length_b 58.51 _cell.length_c 138.23 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5II2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O CYS 94 A CYS 736 1_555 C K K . A K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc2 A O THR 95 A THR 737 1_555 C K K . A K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? metalc ? metalc3 A O ASN 97 A ASN 739 1_555 C K K . A K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc4 C K K . A K 801 1_555 H O HOH . A HOH 934 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.078 ? metalc ? metalc5 C K K . A K 801 1_555 H O HOH . A HOH 977 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc6 D O1 CIT . A CIT 802 1_555 F K K . B K 801 3_654 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc7 D O5 CIT . A CIT 802 1_555 F K K . B K 801 3_654 ? ? ? ? ? ? ? ? ? ? ? ? 2.943 ? metalc ? metalc8 H O HOH . A HOH 949 3_644 F K K . B K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc9 H O HOH . A HOH 971 3_644 F K K . B K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc10 B O CYS 94 B CYS 736 1_555 F K K . B K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc11 B O THR 95 B THR 737 1_555 F K K . B K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? metalc ? metalc12 B O ASN 97 B ASN 739 1_555 F K K . B K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? # _chem_comp.formula 'C15 H10 O6' _chem_comp.formula_weight 286.236 _chem_comp.id LU2 _chem_comp.mon_nstd_flag . _chem_comp.name 2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4H-chromen-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Luteolin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LU2 doub 214 n y C1 C6 LU2 sing 215 n y C1 H1 LU2 sing 216 n n O1 C2 LU2 sing 217 n n O1 HO1 LU2 sing 218 n n C2 C3 LU2 sing 219 n y C4 O2 LU2 sing 220 n n O2 HO2 LU2 sing 221 n n C3 C4 LU2 doub 222 n y C3 H3 LU2 sing 223 n n C7 O3 LU2 doub 224 n n C5 C4 LU2 sing 225 n y O4 C6 LU2 sing 226 n n O4 C9 LU2 sing 227 n n C6 C5 LU2 doub 228 n y C5 C7 LU2 sing 229 n n C12 O5 LU2 sing 230 n n O5 HO5 LU2 sing 231 n n O6 C13 LU2 sing 232 n n O6 HO6 LU2 sing 233 n n C8 C7 LU2 sing 234 n n C9 C8 LU2 doub 235 n n C8 H8 LU2 sing 236 n n C10 C9 LU2 sing 237 n n C15 C10 LU2 doub 238 n y C10 C11 LU2 sing 239 n y C12 C11 LU2 doub 240 n y C11 H11 LU2 sing 241 n n C13 C12 LU2 sing 242 n y C14 C13 LU2 doub 243 n y C14 C15 LU2 sing 244 n y C14 H14 LU2 sing 245 n n C15 H15 LU2 sing 246 n n # _atom_sites.entry_id 5II2 _atom_sites.fract_transf_matrix[1][1] 0.024085 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017091 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007234 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K A 1 801 1 K K . D 3 CIT A 1 802 1 CIT CIT . E 4 LU2 A 1 803 1 LU2 DRG . F 2 K B 1 801 2 K K . G 4 LU2 B 1 802 2 LU2 DRG . H 5 HOH A 1 901 189 HOH HOH . H 5 HOH A 2 902 33 HOH HOH . H 5 HOH A 3 903 167 HOH HOH . H 5 HOH A 4 904 69 HOH HOH . H 5 HOH A 5 905 80 HOH HOH . H 5 HOH A 6 906 1 HOH HOH . H 5 HOH A 7 907 13 HOH HOH . H 5 HOH A 8 908 44 HOH HOH . H 5 HOH A 9 909 119 HOH HOH . H 5 HOH A 10 910 14 HOH HOH . H 5 HOH A 11 911 157 HOH HOH . H 5 HOH A 12 912 27 HOH HOH . H 5 HOH A 13 913 76 HOH HOH . H 5 HOH A 14 914 155 HOH HOH . H 5 HOH A 15 915 17 HOH HOH . H 5 HOH A 16 916 184 HOH HOH . H 5 HOH A 17 917 46 HOH HOH . H 5 HOH A 18 918 67 HOH HOH . H 5 HOH A 19 919 72 HOH HOH . H 5 HOH A 20 920 92 HOH HOH . H 5 HOH A 21 921 26 HOH HOH . H 5 HOH A 22 922 19 HOH HOH . H 5 HOH A 23 923 51 HOH HOH . H 5 HOH A 24 924 41 HOH HOH . H 5 HOH A 25 925 175 HOH HOH . H 5 HOH A 26 926 162 HOH HOH . H 5 HOH A 27 927 149 HOH HOH . H 5 HOH A 28 928 29 HOH HOH . H 5 HOH A 29 929 128 HOH HOH . H 5 HOH A 30 930 37 HOH HOH . H 5 HOH A 31 931 187 HOH HOH . H 5 HOH A 32 932 95 HOH HOH . H 5 HOH A 33 933 28 HOH HOH . H 5 HOH A 34 934 120 HOH HOH . H 5 HOH A 35 935 118 HOH HOH . H 5 HOH A 36 936 161 HOH HOH . H 5 HOH A 37 937 74 HOH HOH . H 5 HOH A 38 938 45 HOH HOH . H 5 HOH A 39 939 193 HOH HOH . H 5 HOH A 40 940 101 HOH HOH . H 5 HOH A 41 941 3 HOH HOH . H 5 HOH A 42 942 159 HOH HOH . H 5 HOH A 43 943 77 HOH HOH . H 5 HOH A 44 944 98 HOH HOH . H 5 HOH A 45 945 117 HOH HOH . H 5 HOH A 46 946 32 HOH HOH . H 5 HOH A 47 947 152 HOH HOH . H 5 HOH A 48 948 40 HOH HOH . H 5 HOH A 49 949 150 HOH HOH . H 5 HOH A 50 950 158 HOH HOH . H 5 HOH A 51 951 112 HOH HOH . H 5 HOH A 52 952 63 HOH HOH . H 5 HOH A 53 953 154 HOH HOH . H 5 HOH A 54 954 218 HOH HOH . H 5 HOH A 55 955 18 HOH HOH . H 5 HOH A 56 956 73 HOH HOH . H 5 HOH A 57 957 81 HOH HOH . H 5 HOH A 58 958 61 HOH HOH . H 5 HOH A 59 959 105 HOH HOH . H 5 HOH A 60 960 153 HOH HOH . H 5 HOH A 61 961 115 HOH HOH . H 5 HOH A 62 962 86 HOH HOH . H 5 HOH A 63 963 129 HOH HOH . H 5 HOH A 64 964 217 HOH HOH . H 5 HOH A 65 965 96 HOH HOH . H 5 HOH A 66 966 196 HOH HOH . H 5 HOH A 67 967 94 HOH HOH . H 5 HOH A 68 968 172 HOH HOH . H 5 HOH A 69 969 85 HOH HOH . H 5 HOH A 70 970 190 HOH HOH . H 5 HOH A 71 971 138 HOH HOH . H 5 HOH A 72 972 104 HOH HOH . H 5 HOH A 73 973 64 HOH HOH . H 5 HOH A 74 974 156 HOH HOH . H 5 HOH A 75 975 215 HOH HOH . H 5 HOH A 76 976 202 HOH HOH . H 5 HOH A 77 977 131 HOH HOH . H 5 HOH A 78 978 103 HOH HOH . H 5 HOH A 79 979 178 HOH HOH . H 5 HOH A 80 980 134 HOH HOH . H 5 HOH A 81 981 127 HOH HOH . H 5 HOH A 82 982 137 HOH HOH . H 5 HOH A 83 983 197 HOH HOH . H 5 HOH A 84 984 125 HOH HOH . H 5 HOH A 85 985 205 HOH HOH . H 5 HOH A 86 986 214 HOH HOH . H 5 HOH A 87 987 146 HOH HOH . H 5 HOH A 88 988 126 HOH HOH . H 5 HOH A 89 989 199 HOH HOH . H 5 HOH A 90 990 219 HOH HOH . I 5 HOH B 1 901 198 HOH HOH . I 5 HOH B 2 902 43 HOH HOH . I 5 HOH B 3 903 165 HOH HOH . I 5 HOH B 4 904 25 HOH HOH . I 5 HOH B 5 905 66 HOH HOH . I 5 HOH B 6 906 4 HOH HOH . I 5 HOH B 7 907 108 HOH HOH . I 5 HOH B 8 908 200 HOH HOH . I 5 HOH B 9 909 7 HOH HOH . I 5 HOH B 10 910 8 HOH HOH . I 5 HOH B 11 911 50 HOH HOH . I 5 HOH B 12 912 180 HOH HOH . I 5 HOH B 13 913 24 HOH HOH . I 5 HOH B 14 914 100 HOH HOH . I 5 HOH B 15 915 124 HOH HOH . I 5 HOH B 16 916 166 HOH HOH . I 5 HOH B 17 917 54 HOH HOH . I 5 HOH B 18 918 93 HOH HOH . I 5 HOH B 19 919 221 HOH HOH . I 5 HOH B 20 920 21 HOH HOH . I 5 HOH B 21 921 5 HOH HOH . I 5 HOH B 22 922 132 HOH HOH . I 5 HOH B 23 923 141 HOH HOH . I 5 HOH B 24 924 130 HOH HOH . I 5 HOH B 25 925 183 HOH HOH . I 5 HOH B 26 926 70 HOH HOH . I 5 HOH B 27 927 22 HOH HOH . I 5 HOH B 28 928 34 HOH HOH . I 5 HOH B 29 929 97 HOH HOH . I 5 HOH B 30 930 133 HOH HOH . I 5 HOH B 31 931 48 HOH HOH . I 5 HOH B 32 932 168 HOH HOH . I 5 HOH B 33 933 55 HOH HOH . I 5 HOH B 34 934 23 HOH HOH . I 5 HOH B 35 935 169 HOH HOH . I 5 HOH B 36 936 140 HOH HOH . I 5 HOH B 37 937 185 HOH HOH . I 5 HOH B 38 938 203 HOH HOH . I 5 HOH B 39 939 136 HOH HOH . I 5 HOH B 40 940 47 HOH HOH . I 5 HOH B 41 941 106 HOH HOH . I 5 HOH B 42 942 122 HOH HOH . I 5 HOH B 43 943 15 HOH HOH . I 5 HOH B 44 944 102 HOH HOH . I 5 HOH B 45 945 144 HOH HOH . I 5 HOH B 46 946 147 HOH HOH . I 5 HOH B 47 947 30 HOH HOH . I 5 HOH B 48 948 107 HOH HOH . I 5 HOH B 49 949 82 HOH HOH . I 5 HOH B 50 950 91 HOH HOH . I 5 HOH B 51 951 52 HOH HOH . I 5 HOH B 52 952 65 HOH HOH . I 5 HOH B 53 953 188 HOH HOH . I 5 HOH B 54 954 62 HOH HOH . I 5 HOH B 55 955 79 HOH HOH . I 5 HOH B 56 956 38 HOH HOH . I 5 HOH B 57 957 84 HOH HOH . I 5 HOH B 58 958 83 HOH HOH . I 5 HOH B 59 959 12 HOH HOH . I 5 HOH B 60 960 39 HOH HOH . I 5 HOH B 61 961 142 HOH HOH . I 5 HOH B 62 962 139 HOH HOH . I 5 HOH B 63 963 182 HOH HOH . I 5 HOH B 64 964 116 HOH HOH . I 5 HOH B 65 965 143 HOH HOH . I 5 HOH B 66 966 195 HOH HOH . I 5 HOH B 67 967 113 HOH HOH . I 5 HOH B 68 968 192 HOH HOH . I 5 HOH B 69 969 179 HOH HOH . I 5 HOH B 70 970 114 HOH HOH . I 5 HOH B 71 971 148 HOH HOH . I 5 HOH B 72 972 121 HOH HOH . I 5 HOH B 73 973 36 HOH HOH . I 5 HOH B 74 974 160 HOH HOH . I 5 HOH B 75 975 88 HOH HOH . I 5 HOH B 76 976 206 HOH HOH . I 5 HOH B 77 977 75 HOH HOH . I 5 HOH B 78 978 78 HOH HOH . I 5 HOH B 79 979 89 HOH HOH . I 5 HOH B 80 980 163 HOH HOH . I 5 HOH B 81 981 209 HOH HOH . I 5 HOH B 82 982 207 HOH HOH . I 5 HOH B 83 983 181 HOH HOH . I 5 HOH B 84 984 213 HOH HOH . I 5 HOH B 85 985 204 HOH HOH . I 5 HOH B 86 986 220 HOH HOH . I 5 HOH B 87 987 173 HOH HOH . I 5 HOH B 88 988 176 HOH HOH . I 5 HOH B 89 989 90 HOH HOH . I 5 HOH B 90 990 216 HOH HOH . I 5 HOH B 91 991 164 HOH HOH . I 5 HOH B 92 992 174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LU2 . . . E 4 10.885 -9.826 -27.838 1 22.78 ? C1 LU2 803 A 1 HETATM 2 O O1 LU2 . . . E 4 10.147 -7.954 -26.567 1 19.77 ? O1 LU2 803 A 1 HETATM 3 C C2 LU2 . . . E 4 10.263 -8.58 -27.767 1 19.98 ? C2 LU2 803 A 1 HETATM 4 O O2 LU2 . . . E 4 9.405 -7.992 -31.34 1 20.5 ? O2 LU2 803 A 1 HETATM 5 C C3 LU2 . . . E 4 9.766 -7.98 -28.931 1 23.2 ? C3 LU2 803 A 1 HETATM 6 O O3 LU2 . . . E 4 10.13 -10.099 -32.54 1 18.97 ? O3 LU2 803 A 1 HETATM 7 C C4 LU2 . . . E 4 9.881 -8.611 -30.193 1 24.32 ? C4 LU2 803 A 1 HETATM 8 O O4 LU2 . . . E 4 11.629 -11.672 -29.101 1 22.38 ? O4 LU2 803 A 1 HETATM 9 C C5 LU2 . . . E 4 10.504 -9.866 -30.268 1 24.54 ? C5 LU2 803 A 1 HETATM 10 O O5 LU2 . . . E 4 12.965 -16.685 -32.274 1 29.31 ? O5 LU2 803 A 1 HETATM 11 C C6 LU2 . . . E 4 10.997 -10.465 -29.083 1 26.11 ? C6 LU2 803 A 1 HETATM 12 O O6 LU2 . . . E 4 13.897 -17.477 -29.807 1 18.09 ? O6 LU2 803 A 1 HETATM 13 C C7 LU2 . . . E 4 10.627 -10.553 -31.495 1 25.51 ? C7 LU2 803 A 1 HETATM 14 C C8 LU2 . . . E 4 11.2 -11.829 -31.488 1 20.61 ? C8 LU2 803 A 1 HETATM 15 C C9 LU2 . . . E 4 11.719 -12.37 -30.291 1 24.38 ? C9 LU2 803 A 1 HETATM 16 C C10 LU2 . . . E 4 12.288 -13.664 -30.225 1 22.12 ? C10 LU2 803 A 1 HETATM 17 C C11 LU2 . . . E 4 12.337 -14.542 -31.336 1 22.24 ? C11 LU2 803 A 1 HETATM 18 C C12 LU2 . . . E 4 12.887 -15.824 -31.205 1 23.08 ? C12 LU2 803 A 1 HETATM 19 C C13 LU2 . . . E 4 13.369 -16.24 -29.953 1 21.4 ? C13 LU2 803 A 1 HETATM 20 C C14 LU2 . . . E 4 13.346 -15.379 -28.848 1 18.92 ? C14 LU2 803 A 1 HETATM 21 C C15 LU2 . . . E 4 12.771 -14.134 -28.991 1 19.49 ? C15 LU2 803 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 21 #