data_5II4 # _model_server_result.job_id sZRk9aLUTpsQq4JIoWd9zw _model_server_result.datetime_utc '2025-03-06 01:29:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ii4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":4203}' # _entry.id 5II4 # _exptl.entry_id 5II4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details 'THIS PROTEIN IS A CHIMERA. RESIDUES 3668-4034 ARE FROM E. COLI MALTOSE BINDING PROTEIN (MBP), CORRESPOND TO RESIDUES 27-393 OF SWISS-PROT DATABASE ENTRY P0AEX9 AND CONTAIN MUTATIONS I3669T, D3749A, K3750A, E3839A, N3840A, A3882H, K3886H, K3906A, A3979V, I3984V, E4026A, E4029A, D4030A AND R4034N (CORRESPONDING TO I28T, D108A, K109A, E198A, N199A, A241H, K245H, K265A, A338V, I343V, E385A, E388A, D389A AND R393N IN P0AEX9). RESIDUES 4038-4175 ARE FROM RED ABALONE VITELLINE ENVELOPE SPERM LYSIN RECEPTOR AND CORRESPOND TO RESIDUES 38-175 OF SWISS-PROT DATABASE ENTRY Q8WR62 AND CONTAIN MUTATIONS N4115Q, N4122T, N4142Y AND N4171Q (CORRESPONDING TO N115Q, N122T, N142Y AND N171Q).' _entity.formula_weight 150.173 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation 'N4115Q, N4122T, N4142Y, N4171Q' _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5II4 _cell.length_a 107.12 _cell.length_b 107.12 _cell.length_c 195.85 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5II4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 B 1 GLC A 4900 MAL 2 n B GLC 2 B 2 GLC A 4900 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 385 A CYS 4043 1_555 A SG CYS 483 A CYS 4141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 414 A CYS 4072 1_555 A SG CYS 446 A CYS 4104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 B O4 GLC . B GLC 1 1_555 B C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 sing # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 261 n n C1 C2 PGE sing 262 n n C1 H1 PGE sing 263 n n C1 H12 PGE sing 264 n n O1 HO1 PGE sing 265 n n C2 O2 PGE sing 266 n n C2 H2 PGE sing 267 n n C2 H22 PGE sing 268 n n O2 C3 PGE sing 269 n n C3 C4 PGE sing 270 n n C3 H3 PGE sing 271 n n C3 H32 PGE sing 272 n n C4 O3 PGE sing 273 n n C4 H4 PGE sing 274 n n C4 H42 PGE sing 275 n n O4 C6 PGE sing 276 n n O4 HO4 PGE sing 277 n n C6 C5 PGE sing 278 n n C6 H6 PGE sing 279 n n C6 H62 PGE sing 280 n n C5 O3 PGE sing 281 n n C5 H5 PGE sing 282 n n C5 H52 PGE sing 283 n n # _atom_sites.entry_id 5II4 _atom_sites.fract_transf_matrix[1][1] 0.009335 _atom_sites.fract_transf_matrix[1][2] 0.00539 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01078 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005106 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PGE A 1 4202 4910 PGE PGE . D 3 PGE A 1 4203 4920 PGE PGE . E 3 PGE A 1 4204 4930 PGE PGE . F 3 PGE A 1 4205 4940 PGE PGE . G 3 PGE A 1 4206 4950 PGE PGE . H 4 HOH A 1 5001 48 HOH HOH . H 4 HOH A 2 5002 104 HOH HOH . H 4 HOH A 3 5003 115 HOH HOH . H 4 HOH A 4 5004 28 HOH HOH . H 4 HOH A 5 5005 59 HOH HOH . H 4 HOH A 6 5006 90 HOH HOH . H 4 HOH A 7 5007 58 HOH HOH . H 4 HOH A 8 5008 29 HOH HOH . H 4 HOH A 9 5009 30 HOH HOH . H 4 HOH A 10 5010 44 HOH HOH . H 4 HOH A 11 5011 65 HOH HOH . H 4 HOH A 12 5012 24 HOH HOH . H 4 HOH A 13 5013 15 HOH HOH . H 4 HOH A 14 5014 16 HOH HOH . H 4 HOH A 15 5015 87 HOH HOH . H 4 HOH A 16 5016 31 HOH HOH . H 4 HOH A 17 5017 39 HOH HOH . H 4 HOH A 18 5018 35 HOH HOH . H 4 HOH A 19 5019 23 HOH HOH . H 4 HOH A 20 5020 70 HOH HOH . H 4 HOH A 21 5021 60 HOH HOH . H 4 HOH A 22 5022 107 HOH HOH . H 4 HOH A 23 5023 11 HOH HOH . H 4 HOH A 24 5024 77 HOH HOH . H 4 HOH A 25 5025 27 HOH HOH . H 4 HOH A 26 5026 8 HOH HOH . H 4 HOH A 27 5027 21 HOH HOH . H 4 HOH A 28 5028 36 HOH HOH . H 4 HOH A 29 5029 6 HOH HOH . H 4 HOH A 30 5030 4 HOH HOH . H 4 HOH A 31 5031 61 HOH HOH . H 4 HOH A 32 5032 26 HOH HOH . H 4 HOH A 33 5033 54 HOH HOH . H 4 HOH A 34 5034 47 HOH HOH . H 4 HOH A 35 5035 20 HOH HOH . H 4 HOH A 36 5036 3 HOH HOH . H 4 HOH A 37 5037 112 HOH HOH . H 4 HOH A 38 5038 34 HOH HOH . H 4 HOH A 39 5039 100 HOH HOH . H 4 HOH A 40 5040 105 HOH HOH . H 4 HOH A 41 5041 51 HOH HOH . H 4 HOH A 42 5042 101 HOH HOH . H 4 HOH A 43 5043 33 HOH HOH . H 4 HOH A 44 5044 64 HOH HOH . H 4 HOH A 45 5045 72 HOH HOH . H 4 HOH A 46 5046 88 HOH HOH . H 4 HOH A 47 5047 78 HOH HOH . H 4 HOH A 48 5048 49 HOH HOH . H 4 HOH A 49 5049 71 HOH HOH . H 4 HOH A 50 5050 1 HOH HOH . H 4 HOH A 51 5051 103 HOH HOH . H 4 HOH A 52 5052 5 HOH HOH . H 4 HOH A 53 5053 46 HOH HOH . H 4 HOH A 54 5054 40 HOH HOH . H 4 HOH A 55 5055 82 HOH HOH . H 4 HOH A 56 5056 79 HOH HOH . H 4 HOH A 57 5057 43 HOH HOH . H 4 HOH A 58 5058 2 HOH HOH . H 4 HOH A 59 5059 7 HOH HOH . H 4 HOH A 60 5060 108 HOH HOH . H 4 HOH A 61 5061 69 HOH HOH . H 4 HOH A 62 5062 52 HOH HOH . H 4 HOH A 63 5063 32 HOH HOH . H 4 HOH A 64 5064 67 HOH HOH . H 4 HOH A 65 5065 22 HOH HOH . H 4 HOH A 66 5066 12 HOH HOH . H 4 HOH A 67 5067 10 HOH HOH . H 4 HOH A 68 5068 45 HOH HOH . H 4 HOH A 69 5069 19 HOH HOH . H 4 HOH A 70 5070 110 HOH HOH . H 4 HOH A 71 5071 98 HOH HOH . H 4 HOH A 72 5072 74 HOH HOH . H 4 HOH A 73 5073 121 HOH HOH . H 4 HOH A 74 5074 89 HOH HOH . H 4 HOH A 75 5075 42 HOH HOH . H 4 HOH A 76 5076 66 HOH HOH . H 4 HOH A 77 5077 117 HOH HOH . H 4 HOH A 78 5078 13 HOH HOH . H 4 HOH A 79 5079 9 HOH HOH . H 4 HOH A 80 5080 57 HOH HOH . H 4 HOH A 81 5081 68 HOH HOH . H 4 HOH A 82 5082 63 HOH HOH . H 4 HOH A 83 5083 116 HOH HOH . H 4 HOH A 84 5084 111 HOH HOH . H 4 HOH A 85 5085 75 HOH HOH . H 4 HOH A 86 5086 106 HOH HOH . H 4 HOH A 87 5087 102 HOH HOH . H 4 HOH A 88 5088 17 HOH HOH . H 4 HOH A 89 5089 80 HOH HOH . H 4 HOH A 90 5090 18 HOH HOH . H 4 HOH A 91 5091 38 HOH HOH . H 4 HOH A 92 5092 85 HOH HOH . H 4 HOH A 93 5093 25 HOH HOH . H 4 HOH A 94 5094 14 HOH HOH . H 4 HOH A 95 5095 94 HOH HOH . H 4 HOH A 96 5096 53 HOH HOH . H 4 HOH A 97 5097 37 HOH HOH . H 4 HOH A 98 5098 83 HOH HOH . H 4 HOH A 99 5099 118 HOH HOH . H 4 HOH A 100 5100 96 HOH HOH . H 4 HOH A 101 5101 97 HOH HOH . H 4 HOH A 102 5102 56 HOH HOH . H 4 HOH A 103 5103 76 HOH HOH . H 4 HOH A 104 5104 55 HOH HOH . H 4 HOH A 105 5105 73 HOH HOH . H 4 HOH A 106 5106 62 HOH HOH . H 4 HOH A 107 5107 109 HOH HOH . H 4 HOH A 108 5108 84 HOH HOH . H 4 HOH A 109 5109 81 HOH HOH . H 4 HOH A 110 5110 41 HOH HOH . H 4 HOH A 111 5111 50 HOH HOH . H 4 HOH A 112 5112 119 HOH HOH . H 4 HOH A 113 5113 91 HOH HOH . H 4 HOH A 114 5114 113 HOH HOH . H 4 HOH A 115 5115 93 HOH HOH . H 4 HOH A 116 5116 95 HOH HOH . H 4 HOH A 117 5117 114 HOH HOH . H 4 HOH A 118 5118 99 HOH HOH . H 4 HOH A 119 5119 92 HOH HOH . H 4 HOH A 120 5120 86 HOH HOH . H 4 HOH A 121 5121 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . D 3 97.652 37.636 8.666 0.97 73.41 ? C1 PGE 4203 A 1 HETATM 2 O O1 PGE . . . D 3 96.352 38.009 8.223 0.97 75.6 ? O1 PGE 4203 A 1 HETATM 3 C C2 PGE . . . D 3 98.449 38.888 8.98 0.97 69.74 ? C2 PGE 4203 A 1 HETATM 4 O O2 PGE . . . D 3 98.566 39.663 7.802 0.97 68.67 ? O2 PGE 4203 A 1 HETATM 5 C C3 PGE . . . D 3 97.835 40.873 7.827 0.97 62.86 ? C3 PGE 4203 A 1 HETATM 6 C C4 PGE . . . D 3 97.584 41.311 6.398 0.97 61.24 ? C4 PGE 4203 A 1 HETATM 7 O O4 PGE . . . D 3 100.617 41.642 3.71 0.97 59.1 ? O4 PGE 4203 A 1 HETATM 8 C C6 PGE . . . D 3 100.104 42.874 4.198 0.97 59.15 ? C6 PGE 4203 A 1 HETATM 9 C C5 PGE . . . D 3 98.736 42.623 4.798 0.97 59.54 ? C5 PGE 4203 A 1 HETATM 10 O O3 PGE . . . D 3 98.823 41.611 5.783 0.97 62.34 ? O3 PGE 4203 A 1 HETATM 11 H H1 PGE . . . D 3 98.197 37.064 7.901 0.97 88.09 ? H1 PGE 4203 A 1 HETATM 12 H H12 PGE . . . D 3 97.604 37.019 9.579 0.97 88.09 ? H12 PGE 4203 A 1 HETATM 13 H HO1 PGE . . . D 3 95.757 37.267 8.388 0.97 90.73 ? HO1 PGE 4203 A 1 HETATM 14 H H2 PGE . . . D 3 97.93 39.458 9.772 0.97 83.68 ? H2 PGE 4203 A 1 HETATM 15 H H22 PGE . . . D 3 99.44 38.6 9.37 0.97 83.68 ? H22 PGE 4203 A 1 HETATM 16 H H3 PGE . . . D 3 98.394 41.664 8.356 0.97 75.43 ? H3 PGE 4203 A 1 HETATM 17 H H32 PGE . . . D 3 96.868 40.74 8.343 0.97 75.43 ? H32 PGE 4203 A 1 HETATM 18 H H4 PGE . . . D 3 96.923 42.195 6.4 0.97 73.49 ? H4 PGE 4203 A 1 HETATM 19 H H42 PGE . . . D 3 97.062 40.502 5.86 0.97 73.49 ? H42 PGE 4203 A 1 HETATM 20 H HO4 PGE . . . D 3 101.529 41.79 3.429 0.97 70.92 ? HO4 PGE 4203 A 1 HETATM 21 H H6 PGE . . . D 3 100.754 43.301 4.98 0.97 70.98 ? H6 PGE 4203 A 1 HETATM 22 H H62 PGE . . . D 3 100.001 43.623 3.398 0.97 70.98 ? H62 PGE 4203 A 1 HETATM 23 H H5 PGE . . . D 3 98.039 42.334 3.993 0.97 71.45 ? H5 PGE 4203 A 1 HETATM 24 H H52 PGE . . . D 3 98.361 43.562 5.24 0.97 71.45 ? H52 PGE 4203 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 360 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #