data_5IID # _model_server_result.job_id bpEh4KKXeeq_H6XaB27VhQ _model_server_result.datetime_utc '2024-11-05 04:01:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5iid # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":801}' # _entry.id 5IID # _exptl.entry_id 5IID _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 270.237 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(3,4-dihydroxyphenyl)-5-hydroxy-4H-1-benzopyran-4-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IID _cell.length_a 41.5 _cell.length_b 56.4 _cell.length_c 139.48 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IID _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C15 H10 O5' _chem_comp.formula_weight 270.237 _chem_comp.id 6BK _chem_comp.mon_nstd_flag . _chem_comp.name 2-(3,4-dihydroxyphenyl)-5-hydroxy-4H-1-benzopyran-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAN CAM 6BK doub 1 n y CAN CAO 6BK sing 2 n y CAM CAL 6BK sing 3 n y CAO CAP 6BK doub 4 n y CAL OAK 6BK sing 5 n n CAL CAQ 6BK doub 6 n y OAK CAB 6BK sing 7 n n CAD CAE 6BK doub 8 n y CAD CAC 6BK sing 9 n y CAE CAF 6BK sing 10 n y CAP CAQ 6BK sing 11 n y CAP OAT 6BK sing 12 n n CAQ CAR 6BK sing 13 n n CAB CAC 6BK sing 14 n n CAB CAA 6BK doub 15 n n CAC CAH 6BK doub 16 n y CAF OAJ 6BK sing 17 n n CAF CAG 6BK doub 18 n y CAR CAA 6BK sing 19 n n CAR OAS 6BK doub 20 n n CAH CAG 6BK sing 21 n y CAG OAI 6BK sing 22 n n OAI H1 6BK sing 23 n n CAH H2 6BK sing 24 n n OAJ H3 6BK sing 25 n n CAE H4 6BK sing 26 n n CAD H5 6BK sing 27 n n CAA H6 6BK sing 28 n n CAM H7 6BK sing 29 n n CAN H8 6BK sing 30 n n CAO H9 6BK sing 31 n n OAT H10 6BK sing 32 n n # _atom_sites.entry_id 5IID _atom_sites.fract_transf_matrix[1][1] 0.024096 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01773 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007169 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 6BK A 1 801 1 6BK DRG . D 2 6BK B 1 801 2 6BK DRG . E 3 HOH A 1 901 48 HOH HOH . E 3 HOH A 2 902 23 HOH HOH . E 3 HOH A 3 903 1 HOH HOH . E 3 HOH A 4 904 7 HOH HOH . E 3 HOH A 5 905 16 HOH HOH . E 3 HOH A 6 906 11 HOH HOH . E 3 HOH A 7 907 47 HOH HOH . E 3 HOH A 8 908 42 HOH HOH . E 3 HOH A 9 909 25 HOH HOH . E 3 HOH A 10 910 12 HOH HOH . E 3 HOH A 11 911 43 HOH HOH . E 3 HOH A 12 912 28 HOH HOH . E 3 HOH A 13 913 21 HOH HOH . E 3 HOH A 14 914 15 HOH HOH . E 3 HOH A 15 915 22 HOH HOH . E 3 HOH A 16 916 45 HOH HOH . E 3 HOH A 17 917 35 HOH HOH . E 3 HOH A 18 918 29 HOH HOH . E 3 HOH A 19 919 44 HOH HOH . E 3 HOH A 20 920 5 HOH HOH . E 3 HOH A 21 921 3 HOH HOH . E 3 HOH A 22 922 20 HOH HOH . E 3 HOH A 23 923 10 HOH HOH . F 3 HOH B 1 901 30 HOH HOH . F 3 HOH B 2 902 14 HOH HOH . F 3 HOH B 3 903 49 HOH HOH . F 3 HOH B 4 904 9 HOH HOH . F 3 HOH B 5 905 13 HOH HOH . F 3 HOH B 6 906 36 HOH HOH . F 3 HOH B 7 907 34 HOH HOH . F 3 HOH B 8 908 40 HOH HOH . F 3 HOH B 9 909 27 HOH HOH . F 3 HOH B 10 910 41 HOH HOH . F 3 HOH B 11 911 39 HOH HOH . F 3 HOH B 12 912 4 HOH HOH . F 3 HOH B 13 913 8 HOH HOH . F 3 HOH B 14 914 33 HOH HOH . F 3 HOH B 15 915 50 HOH HOH . F 3 HOH B 16 916 24 HOH HOH . F 3 HOH B 17 917 6 HOH HOH . F 3 HOH B 18 918 2 HOH HOH . F 3 HOH B 19 919 32 HOH HOH . F 3 HOH B 20 920 31 HOH HOH . F 3 HOH B 21 921 17 HOH HOH . F 3 HOH B 22 922 19 HOH HOH . F 3 HOH B 23 923 26 HOH HOH . F 3 HOH B 24 924 37 HOH HOH . F 3 HOH B 25 925 46 HOH HOH . F 3 HOH B 26 926 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAI 6BK . . . D 2 6.713 47.337 29.942 1 50.09 ? OAI 6BK 801 B 1 HETATM 2 C CAG 6BK . . . D 2 7.463 48.371 30.51 1 79.18 ? CAG 6BK 801 B 1 HETATM 3 C CAH 6BK . . . D 2 7.992 49.419 29.716 1 55.96 ? CAH 6BK 801 B 1 HETATM 4 C CAF 6BK . . . D 2 7.714 48.392 31.901 1 69.31 ? CAF 6BK 801 B 1 HETATM 5 O OAJ 6BK . . . D 2 7.243 47.433 32.721 1 51.66 ? OAJ 6BK 801 B 1 HETATM 6 C CAE 6BK . . . D 2 8.473 49.405 32.486 1 74.57 ? CAE 6BK 801 B 1 HETATM 7 C CAD 6BK . . . D 2 8.987 50.432 31.691 1 61.72 ? CAD 6BK 801 B 1 HETATM 8 C CAC 6BK . . . D 2 8.74 50.456 30.307 1 54.33 ? CAC 6BK 801 B 1 HETATM 9 C CAB 6BK . . . D 2 9.315 51.494 29.555 1 57.41 ? CAB 6BK 801 B 1 HETATM 10 O OAK 6BK . . . D 2 9.141 51.584 28.182 1 56.99 ? OAK 6BK 801 B 1 HETATM 11 C CAA 6BK . . . D 2 10.237 52.318 30.21 1 48.72 ? CAA 6BK 801 B 1 HETATM 12 C CAR 6BK . . . D 2 10.904 53.357 29.56 1 58.11 ? CAR 6BK 801 B 1 HETATM 13 O OAS 6BK . . . D 2 11.665 54.105 30.209 1 35.72 ? OAS 6BK 801 B 1 HETATM 14 C CAQ 6BK . . . D 2 10.675 53.503 28.176 1 41.79 ? CAQ 6BK 801 B 1 HETATM 15 C CAL 6BK . . . D 2 9.798 52.617 27.519 1 44.98 ? CAL 6BK 801 B 1 HETATM 16 C CAM 6BK . . . D 2 9.562 52.771 26.15 1 42.84 ? CAM 6BK 801 B 1 HETATM 17 C CAN 6BK . . . D 2 10.192 53.796 25.448 1 43.13 ? CAN 6BK 801 B 1 HETATM 18 C CAO 6BK . . . D 2 11.048 54.683 26.105 1 43.68 ? CAO 6BK 801 B 1 HETATM 19 C CAP 6BK . . . D 2 11.292 54.542 27.476 1 44.92 ? CAP 6BK 801 B 1 HETATM 20 O OAT 6BK . . . D 2 12.123 55.423 28.131 1 36.29 ? OAT 6BK 801 B 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #