data_5IIT
#
_model_server_result.job_id            qrj-bKAuI-MlCwFCv-vEKA 
_model_server_result.datetime_utc      '2024-11-17 04:44:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5iit 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":404}' 
#
_entry.id    5IIT 
#
_exptl.entry_id    5IIT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.32 
_cell.angle_gamma         90 
_cell.entry_id            5IIT 
_cell.length_a            105.64 
_cell.length_b            67.922 
_cell.length_c            129.677 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5IIT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,H,T 1 1 
B,I,J,K,L,U 2 1 
C,M,N,O,P,Q,V 3 1 
D,R,S,W 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 O N N 
? 4 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B O GLY 263 B GLY 263 1_555 L MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc2 B O LEU 266 B LEU 266 1_555 L MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc3 B O ALA 268 B ALA 268 1_555 L MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? 
metalc ? metalc4 L MG MG . B MG 404 1_555 U O HOH . B HOH 543 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? 
metalc ? metalc5 L MG MG . B MG 404 1_555 U O HOH . B HOH 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? 
metalc ? metalc6 C O GLY 263 C GLY 263 1_555 Q MG MG . C MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.849 ? 
metalc ? metalc7 C O LEU 266 C LEU 266 1_555 Q MG MG . C MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? 
metalc ? metalc8 C O ALA 268 C ALA 268 1_555 Q MG MG . C MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? 
metalc ? metalc9 Q MG MG . C MG 405 1_555 V O HOH . C HOH 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5IIT 
_atom_sites.fract_transf_matrix[1][1]    0.009466 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000549 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014723 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007724 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MES A 1 401 500 MES MES . 
F 3 SO4 A 1 402 501 SO4 SO4 . 
G 4 EDO A 1 403 503 EDO EDO . 
H 4 EDO A 1 404 502 EDO EDO . 
I 4 EDO B 1 401 502 EDO EDO . 
J 2 MES B 1 402 500 MES MES . 
K 3 SO4 B 1 403 501 SO4 SO4 . 
L 5 MG B 1 404 503 MG MG . 
M 2 MES C 1 401 500 MES MES . 
N 3 SO4 C 1 402 501 SO4 SO4 . 
O 4 EDO C 1 403 503 EDO EDO . 
P 4 EDO C 1 404 504 EDO EDO . 
Q 5 MG C 1 405 505 MG MG . 
R 2 MES D 1 401 500 MES MES . 
S 3 SO4 D 1 402 503 SO4 SO4 . 
T 6 HOH A 1 501 15 HOH HOH . 
T 6 HOH A 2 502 5 HOH HOH . 
T 6 HOH A 3 503 71 HOH HOH . 
T 6 HOH A 4 504 10 HOH HOH . 
T 6 HOH A 5 505 65 HOH HOH . 
T 6 HOH A 6 506 38 HOH HOH . 
T 6 HOH A 7 507 47 HOH HOH . 
T 6 HOH A 8 508 13 HOH HOH . 
T 6 HOH A 9 509 74 HOH HOH . 
T 6 HOH A 10 510 254 HOH HOH . 
T 6 HOH A 11 511 37 HOH HOH . 
T 6 HOH A 12 512 218 HOH HOH . 
T 6 HOH A 13 513 28 HOH HOH . 
T 6 HOH A 14 514 40 HOH HOH . 
T 6 HOH A 15 515 25 HOH HOH . 
T 6 HOH A 16 516 149 HOH HOH . 
T 6 HOH A 17 517 76 HOH HOH . 
T 6 HOH A 18 518 140 HOH HOH . 
T 6 HOH A 19 519 147 HOH HOH . 
T 6 HOH A 20 520 126 HOH HOH . 
T 6 HOH A 21 521 97 HOH HOH . 
T 6 HOH A 22 522 108 HOH HOH . 
T 6 HOH A 23 523 62 HOH HOH . 
T 6 HOH A 24 524 104 HOH HOH . 
T 6 HOH A 25 525 30 HOH HOH . 
T 6 HOH A 26 526 166 HOH HOH . 
T 6 HOH A 27 527 21 HOH HOH . 
T 6 HOH A 28 528 100 HOH HOH . 
T 6 HOH A 29 529 98 HOH HOH . 
T 6 HOH A 30 530 87 HOH HOH . 
T 6 HOH A 31 531 68 HOH HOH . 
T 6 HOH A 32 532 178 HOH HOH . 
T 6 HOH A 33 533 197 HOH HOH . 
T 6 HOH A 34 534 146 HOH HOH . 
T 6 HOH A 35 535 246 HOH HOH . 
T 6 HOH A 36 536 192 HOH HOH . 
T 6 HOH A 37 537 193 HOH HOH . 
T 6 HOH A 38 538 187 HOH HOH . 
T 6 HOH A 39 539 96 HOH HOH . 
T 6 HOH A 40 540 195 HOH HOH . 
T 6 HOH A 41 541 179 HOH HOH . 
T 6 HOH A 42 542 235 HOH HOH . 
T 6 HOH A 43 543 232 HOH HOH . 
T 6 HOH A 44 544 90 HOH HOH . 
U 6 HOH B 1 501 20 HOH HOH . 
U 6 HOH B 2 502 79 HOH HOH . 
U 6 HOH B 3 503 43 HOH HOH . 
U 6 HOH B 4 504 123 HOH HOH . 
U 6 HOH B 5 505 16 HOH HOH . 
U 6 HOH B 6 506 110 HOH HOH . 
U 6 HOH B 7 507 73 HOH HOH . 
U 6 HOH B 8 508 9 HOH HOH . 
U 6 HOH B 9 509 172 HOH HOH . 
U 6 HOH B 10 510 3 HOH HOH . 
U 6 HOH B 11 511 171 HOH HOH . 
U 6 HOH B 12 512 56 HOH HOH . 
U 6 HOH B 13 513 184 HOH HOH . 
U 6 HOH B 14 514 2 HOH HOH . 
U 6 HOH B 15 515 45 HOH HOH . 
U 6 HOH B 16 516 240 HOH HOH . 
U 6 HOH B 17 517 114 HOH HOH . 
U 6 HOH B 18 518 122 HOH HOH . 
U 6 HOH B 19 519 86 HOH HOH . 
U 6 HOH B 20 520 83 HOH HOH . 
U 6 HOH B 21 521 216 HOH HOH . 
U 6 HOH B 22 522 52 HOH HOH . 
U 6 HOH B 23 523 151 HOH HOH . 
U 6 HOH B 24 524 8 HOH HOH . 
U 6 HOH B 25 525 66 HOH HOH . 
U 6 HOH B 26 526 91 HOH HOH . 
U 6 HOH B 27 527 41 HOH HOH . 
U 6 HOH B 28 528 19 HOH HOH . 
U 6 HOH B 29 529 81 HOH HOH . 
U 6 HOH B 30 530 222 HOH HOH . 
U 6 HOH B 31 531 51 HOH HOH . 
U 6 HOH B 32 532 177 HOH HOH . 
U 6 HOH B 33 533 189 HOH HOH . 
U 6 HOH B 34 534 82 HOH HOH . 
U 6 HOH B 35 535 128 HOH HOH . 
U 6 HOH B 36 536 18 HOH HOH . 
U 6 HOH B 37 537 57 HOH HOH . 
U 6 HOH B 38 538 105 HOH HOH . 
U 6 HOH B 39 539 106 HOH HOH . 
U 6 HOH B 40 540 120 HOH HOH . 
U 6 HOH B 41 541 36 HOH HOH . 
U 6 HOH B 42 542 64 HOH HOH . 
U 6 HOH B 43 543 111 HOH HOH . 
U 6 HOH B 44 544 14 HOH HOH . 
U 6 HOH B 45 545 180 HOH HOH . 
U 6 HOH B 46 546 6 HOH HOH . 
U 6 HOH B 47 547 206 HOH HOH . 
U 6 HOH B 48 548 54 HOH HOH . 
U 6 HOH B 49 549 247 HOH HOH . 
U 6 HOH B 50 550 129 HOH HOH . 
U 6 HOH B 51 551 238 HOH HOH . 
U 6 HOH B 52 552 136 HOH HOH . 
U 6 HOH B 53 553 211 HOH HOH . 
U 6 HOH B 54 554 248 HOH HOH . 
U 6 HOH B 55 555 132 HOH HOH . 
V 6 HOH C 1 501 144 HOH HOH . 
V 6 HOH C 2 502 176 HOH HOH . 
V 6 HOH C 3 503 159 HOH HOH . 
V 6 HOH C 4 504 72 HOH HOH . 
V 6 HOH C 5 505 35 HOH HOH . 
V 6 HOH C 6 506 199 HOH HOH . 
V 6 HOH C 7 507 107 HOH HOH . 
V 6 HOH C 8 508 22 HOH HOH . 
V 6 HOH C 9 509 150 HOH HOH . 
V 6 HOH C 10 510 93 HOH HOH . 
V 6 HOH C 11 511 33 HOH HOH . 
V 6 HOH C 12 512 138 HOH HOH . 
V 6 HOH C 13 513 249 HOH HOH . 
V 6 HOH C 14 514 42 HOH HOH . 
V 6 HOH C 15 515 49 HOH HOH . 
V 6 HOH C 16 516 134 HOH HOH . 
V 6 HOH C 17 517 1 HOH HOH . 
V 6 HOH C 18 518 23 HOH HOH . 
V 6 HOH C 19 519 39 HOH HOH . 
V 6 HOH C 20 520 168 HOH HOH . 
V 6 HOH C 21 521 88 HOH HOH . 
V 6 HOH C 22 522 221 HOH HOH . 
V 6 HOH C 23 523 117 HOH HOH . 
V 6 HOH C 24 524 26 HOH HOH . 
V 6 HOH C 25 525 191 HOH HOH . 
V 6 HOH C 26 526 169 HOH HOH . 
V 6 HOH C 27 527 4 HOH HOH . 
V 6 HOH C 28 528 145 HOH HOH . 
V 6 HOH C 29 529 48 HOH HOH . 
V 6 HOH C 30 530 158 HOH HOH . 
V 6 HOH C 31 531 228 HOH HOH . 
V 6 HOH C 32 532 170 HOH HOH . 
V 6 HOH C 33 533 209 HOH HOH . 
V 6 HOH C 34 534 61 HOH HOH . 
V 6 HOH C 35 535 242 HOH HOH . 
V 6 HOH C 36 536 213 HOH HOH . 
V 6 HOH C 37 537 142 HOH HOH . 
V 6 HOH C 38 538 215 HOH HOH . 
V 6 HOH C 39 539 58 HOH HOH . 
V 6 HOH C 40 540 198 HOH HOH . 
V 6 HOH C 41 541 214 HOH HOH . 
V 6 HOH C 42 542 196 HOH HOH . 
V 6 HOH C 43 543 125 HOH HOH . 
V 6 HOH C 44 544 243 HOH HOH . 
V 6 HOH C 45 545 251 HOH HOH . 
W 6 HOH D 1 501 255 HOH HOH . 
W 6 HOH D 2 502 141 HOH HOH . 
W 6 HOH D 3 503 236 HOH HOH . 
W 6 HOH D 4 504 121 HOH HOH . 
W 6 HOH D 5 505 17 HOH HOH . 
W 6 HOH D 6 506 162 HOH HOH . 
W 6 HOH D 7 507 32 HOH HOH . 
W 6 HOH D 8 508 27 HOH HOH . 
W 6 HOH D 9 509 241 HOH HOH . 
W 6 HOH D 10 510 118 HOH HOH . 
W 6 HOH D 11 511 92 HOH HOH . 
W 6 HOH D 12 512 139 HOH HOH . 
W 6 HOH D 13 513 245 HOH HOH . 
W 6 HOH D 14 514 55 HOH HOH . 
W 6 HOH D 15 515 173 HOH HOH . 
W 6 HOH D 16 516 31 HOH HOH . 
W 6 HOH D 17 517 60 HOH HOH . 
W 6 HOH D 18 518 160 HOH HOH . 
W 6 HOH D 19 519 133 HOH HOH . 
W 6 HOH D 20 520 53 HOH HOH . 
W 6 HOH D 21 521 167 HOH HOH . 
W 6 HOH D 22 522 24 HOH HOH . 
W 6 HOH D 23 523 155 HOH HOH . 
W 6 HOH D 24 524 152 HOH HOH . 
W 6 HOH D 25 525 116 HOH HOH . 
W 6 HOH D 26 526 164 HOH HOH . 
W 6 HOH D 27 527 131 HOH HOH . 
W 6 HOH D 28 528 165 HOH HOH . 
W 6 HOH D 29 529 207 HOH HOH . 
W 6 HOH D 30 530 223 HOH HOH . 
W 6 HOH D 31 531 219 HOH HOH . 
W 6 HOH D 32 532 190 HOH HOH . 
W 6 HOH D 33 533 75 HOH HOH . 
W 6 HOH D 34 534 239 HOH HOH . 
W 6 HOH D 35 535 124 HOH HOH . 
W 6 HOH D 36 536 153 HOH HOH . 
W 6 HOH D 37 537 161 HOH HOH . 
W 6 HOH D 38 538 63 HOH HOH . 
W 6 HOH D 39 539 212 HOH HOH . 
W 6 HOH D 40 540 99 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . H 4 -93.709 47.544 -20.441 1 61.35 ? C1 EDO 404 A 1 
HETATM 2 O O1 EDO . . . H 4 -94.545 46.428 -20.774 1 56.34 ? O1 EDO 404 A 1 
HETATM 3 C C2 EDO . . . H 4 -92.856 47.948 -21.641 1 55.88 ? C2 EDO 404 A 1 
HETATM 4 O O2 EDO . . . H 4 -91.582 47.294 -21.575 1 54.31 ? O2 EDO 404 A 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    103 
_model_server_stats.query_time_ms           475 
_model_server_stats.encode_time_ms          40 
_model_server_stats.element_count           4 
#