data_5IJJ # _model_server_result.job_id qRN1f6xiTSUdnwncgc0MFw _model_server_result.datetime_utc '2024-11-17 02:38:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ijj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 5IJJ # _exptl.entry_id 5IJJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 660.035 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSITOL HEXAKISPHOSPHATE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.42 _cell.angle_gamma 90 _cell.entry_id 5IJJ _cell.length_a 89.363 _cell.length_b 53.366 _cell.length_c 94.314 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IJJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,K 1 1 B,G,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C6 H18 O24 P6' _chem_comp.formula_weight 660.035 _chem_comp.id IHP _chem_comp.mon_nstd_flag . _chem_comp.name 'INOSITOL HEXAKISPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'MYO-INOSITOL HEXAKISPHOSPHATE;INOSITOL 1,2,3,4,5,6-HEXAKISPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IHP sing 167 n n C1 C6 IHP sing 168 n n C1 O11 IHP sing 169 n n C1 H1 IHP sing 170 n n C2 C3 IHP sing 171 n n C2 O12 IHP sing 172 n n C2 H2 IHP sing 173 n n C3 C4 IHP sing 174 n n C3 O13 IHP sing 175 n n C3 H3 IHP sing 176 n n C4 C5 IHP sing 177 n n C4 O14 IHP sing 178 n n C4 H4 IHP sing 179 n n C5 C6 IHP sing 180 n n C5 O15 IHP sing 181 n n C5 H5 IHP sing 182 n n C6 O16 IHP sing 183 n n C6 H6 IHP sing 184 n n O11 P1 IHP sing 185 n n P1 O21 IHP doub 186 n n P1 O31 IHP sing 187 n n P1 O41 IHP sing 188 n n O31 H31 IHP sing 189 n n O41 H41 IHP sing 190 n n O12 P2 IHP sing 191 n n P2 O22 IHP doub 192 n n P2 O32 IHP sing 193 n n P2 O42 IHP sing 194 n n O32 H32 IHP sing 195 n n O42 H42 IHP sing 196 n n O13 P3 IHP sing 197 n n P3 O23 IHP doub 198 n n P3 O33 IHP sing 199 n n P3 O43 IHP sing 200 n n O33 H33 IHP sing 201 n n O43 H43 IHP sing 202 n n O14 P4 IHP sing 203 n n P4 O24 IHP doub 204 n n P4 O34 IHP sing 205 n n P4 O44 IHP sing 206 n n O34 H34 IHP sing 207 n n O44 H44 IHP sing 208 n n O15 P5 IHP sing 209 n n P5 O25 IHP doub 210 n n P5 O35 IHP sing 211 n n P5 O45 IHP sing 212 n n O35 H35 IHP sing 213 n n O45 H45 IHP sing 214 n n O16 P6 IHP sing 215 n n P6 O26 IHP doub 216 n n P6 O36 IHP sing 217 n n P6 O46 IHP sing 218 n n O36 H36 IHP sing 219 n n O46 H46 IHP sing 220 n n # _atom_sites.entry_id 5IJJ _atom_sites.fract_transf_matrix[1][1] 0.01119 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004847 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018739 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011555 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IHP A 1 500 500 IHP I6P . D 3 EDO A 1 501 501 EDO EDO . E 3 EDO A 1 502 502 EDO EDO . F 4 ACT A 1 503 503 ACT ACT . G 2 IHP B 1 500 500 IHP I6P . H 2 IHP B 1 501 501 IHP I6P . I 3 EDO B 1 502 502 EDO EDO . J 3 EDO B 1 503 503 EDO EDO . K 5 HOH A 1 601 84 HOH HOH . K 5 HOH A 2 602 27 HOH HOH . K 5 HOH A 3 603 82 HOH HOH . K 5 HOH A 4 604 21 HOH HOH . K 5 HOH A 5 605 74 HOH HOH . K 5 HOH A 6 606 49 HOH HOH . K 5 HOH A 7 607 44 HOH HOH . K 5 HOH A 8 608 3 HOH HOH . K 5 HOH A 9 609 55 HOH HOH . K 5 HOH A 10 610 14 HOH HOH . K 5 HOH A 11 611 45 HOH HOH . K 5 HOH A 12 612 30 HOH HOH . K 5 HOH A 13 613 5 HOH HOH . K 5 HOH A 14 614 7 HOH HOH . K 5 HOH A 15 615 65 HOH HOH . K 5 HOH A 16 616 47 HOH HOH . K 5 HOH A 17 617 69 HOH HOH . K 5 HOH A 18 618 19 HOH HOH . K 5 HOH A 19 619 77 HOH HOH . K 5 HOH A 20 620 67 HOH HOH . K 5 HOH A 21 621 29 HOH HOH . K 5 HOH A 22 622 4 HOH HOH . K 5 HOH A 23 623 56 HOH HOH . K 5 HOH A 24 624 2 HOH HOH . K 5 HOH A 25 625 20 HOH HOH . K 5 HOH A 26 626 59 HOH HOH . K 5 HOH A 27 627 66 HOH HOH . K 5 HOH A 28 628 72 HOH HOH . K 5 HOH A 29 629 52 HOH HOH . K 5 HOH A 30 630 24 HOH HOH . K 5 HOH A 31 631 70 HOH HOH . K 5 HOH A 32 632 38 HOH HOH . K 5 HOH A 33 633 41 HOH HOH . K 5 HOH A 34 634 43 HOH HOH . K 5 HOH A 35 635 33 HOH HOH . K 5 HOH A 36 636 8 HOH HOH . K 5 HOH A 37 637 22 HOH HOH . K 5 HOH A 38 638 71 HOH HOH . K 5 HOH A 39 639 51 HOH HOH . K 5 HOH A 40 640 15 HOH HOH . K 5 HOH A 41 641 73 HOH HOH . K 5 HOH A 42 642 79 HOH HOH . L 5 HOH B 1 601 81 HOH HOH . L 5 HOH B 2 602 76 HOH HOH . L 5 HOH B 3 603 36 HOH HOH . L 5 HOH B 4 604 39 HOH HOH . L 5 HOH B 5 605 60 HOH HOH . L 5 HOH B 6 606 83 HOH HOH . L 5 HOH B 7 607 1 HOH HOH . L 5 HOH B 8 608 34 HOH HOH . L 5 HOH B 9 609 75 HOH HOH . L 5 HOH B 10 610 62 HOH HOH . L 5 HOH B 11 611 31 HOH HOH . L 5 HOH B 12 612 16 HOH HOH . L 5 HOH B 13 613 53 HOH HOH . L 5 HOH B 14 614 11 HOH HOH . L 5 HOH B 15 615 12 HOH HOH . L 5 HOH B 16 616 54 HOH HOH . L 5 HOH B 17 617 10 HOH HOH . L 5 HOH B 18 618 9 HOH HOH . L 5 HOH B 19 619 25 HOH HOH . L 5 HOH B 20 620 58 HOH HOH . L 5 HOH B 21 621 42 HOH HOH . L 5 HOH B 22 622 13 HOH HOH . L 5 HOH B 23 623 46 HOH HOH . L 5 HOH B 24 624 28 HOH HOH . L 5 HOH B 25 625 40 HOH HOH . L 5 HOH B 26 626 50 HOH HOH . L 5 HOH B 27 627 64 HOH HOH . L 5 HOH B 28 628 37 HOH HOH . L 5 HOH B 29 629 17 HOH HOH . L 5 HOH B 30 630 63 HOH HOH . L 5 HOH B 31 631 78 HOH HOH . L 5 HOH B 32 632 61 HOH HOH . L 5 HOH B 33 633 23 HOH HOH . L 5 HOH B 34 634 18 HOH HOH . L 5 HOH B 35 635 80 HOH HOH . L 5 HOH B 36 636 57 HOH HOH . L 5 HOH B 37 637 48 HOH HOH . L 5 HOH B 38 638 68 HOH HOH . L 5 HOH B 39 639 26 HOH HOH . L 5 HOH B 40 640 6 HOH HOH . L 5 HOH B 41 641 32 HOH HOH . L 5 HOH B 42 642 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IHP . . . C 2 -17.293 -7.893 38.205 1 75.19 ? C1 IHP 500 A 1 HETATM 2 C C2 IHP . . . C 2 -16.519 -7.513 36.961 1 72.12 ? C2 IHP 500 A 1 HETATM 3 C C3 IHP . . . C 2 -16.377 -6.04 36.635 1 61.78 ? C3 IHP 500 A 1 HETATM 4 C C4 IHP . . . C 2 -16.062 -5.186 37.853 1 71.07 ? C4 IHP 500 A 1 HETATM 5 C C5 IHP . . . C 2 -17.006 -5.387 39.018 1 74.99 ? C5 IHP 500 A 1 HETATM 6 C C6 IHP . . . C 2 -17.523 -6.794 39.227 1 76.02 ? C6 IHP 500 A 1 HETATM 7 O O11 IHP . . . C 2 -16.627 -8.982 38.825 1 78.84 ? O11 IHP 500 A 1 HETATM 8 P P1 IHP . . . C 2 -17.415 -10.137 39.652 1 80.85 ? P1 IHP 500 A 1 HETATM 9 O O21 IHP . . . C 2 -16.348 -11.185 39.818 1 70.65 ? O21 IHP 500 A 1 HETATM 10 O O31 IHP . . . C 2 -17.802 -9.523 40.985 1 77.09 ? O31 IHP 500 A 1 HETATM 11 O O41 IHP . . . C 2 -18.575 -10.48 38.711 1 80.5 ? O41 IHP 500 A 1 HETATM 12 O O12 IHP . . . C 2 -17.282 -8.118 35.933 1 78.81 ? O12 IHP 500 A 1 HETATM 13 P P2 IHP . . . C 2 -16.861 -9.435 35.095 1 72.2 ? P2 IHP 500 A 1 HETATM 14 O O22 IHP . . . C 2 -18.112 -10.291 35.015 1 67.5 ? O22 IHP 500 A 1 HETATM 15 O O32 IHP . . . C 2 -15.838 -10.125 35.956 1 77.54 ? O32 IHP 500 A 1 HETATM 16 O O42 IHP . . . C 2 -16.452 -8.74 33.799 1 62.99 ? O42 IHP 500 A 1 HETATM 17 O O13 IHP . . . C 2 -17.592 -5.593 36.088 1 73.43 ? O13 IHP 500 A 1 HETATM 18 P P3 IHP . . . C 2 -17.845 -4.992 34.597 1 72.71 ? P3 IHP 500 A 1 HETATM 19 O O23 IHP . . . C 2 -17.525 -3.529 34.666 1 65.77 ? O23 IHP 500 A 1 HETATM 20 O O33 IHP . . . C 2 -16.998 -5.777 33.609 1 70.87 ? O33 IHP 500 A 1 HETATM 21 O O43 IHP . . . C 2 -19.315 -5.291 34.415 1 71.16 ? O43 IHP 500 A 1 HETATM 22 O O14 IHP . . . C 2 -16.311 -3.811 37.572 1 79.06 ? O14 IHP 500 A 1 HETATM 23 P P4 IHP . . . C 2 -15.267 -2.661 37.201 1 79.36 ? P4 IHP 500 A 1 HETATM 24 O O24 IHP . . . C 2 -16.073 -1.422 37.518 1 87.09 ? O24 IHP 500 A 1 HETATM 25 O O34 IHP . . . C 2 -14.113 -2.901 38.158 1 89.74 ? O34 IHP 500 A 1 HETATM 26 O O44 IHP . . . C 2 -14.955 -2.834 35.714 1 79.45 ? O44 IHP 500 A 1 HETATM 27 O O15 IHP . . . C 2 -16.436 -4.949 40.248 1 74.55 ? O15 IHP 500 A 1 HETATM 28 P P5 IHP . . . C 2 -17.129 -3.922 41.287 1 89.02 ? P5 IHP 500 A 1 HETATM 29 O O25 IHP . . . C 2 -18.52 -3.598 40.769 1 73.27 ? O25 IHP 500 A 1 HETATM 30 O O35 IHP . . . C 2 -16.208 -2.711 41.259 1 82.48 ? O35 IHP 500 A 1 HETATM 31 O O45 IHP . . . C 2 -17.078 -4.824 42.5 1 86.44 ? O45 IHP 500 A 1 HETATM 32 O O16 IHP . . . C 2 -18.884 -6.509 39.028 1 89.77 ? O16 IHP 500 A 1 HETATM 33 P P6 IHP . . . C 2 -19.98 -6.714 40.146 1 91.43 ? P6 IHP 500 A 1 HETATM 34 O O26 IHP . . . C 2 -19.793 -8.199 40.378 1 86.24 ? O26 IHP 500 A 1 HETATM 35 O O36 IHP . . . C 2 -21.178 -6.199 39.336 1 74.81 ? O36 IHP 500 A 1 HETATM 36 O O46 IHP . . . C 2 -19.524 -5.886 41.316 1 62.11 ? O46 IHP 500 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 36 #