data_5IJJ # _model_server_result.job_id eOuli3mH7NWM8CfOnJhlAQ _model_server_result.datetime_utc '2024-11-17 02:52:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ijj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":501}' # _entry.id 5IJJ # _exptl.entry_id 5IJJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 660.035 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSITOL HEXAKISPHOSPHATE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.42 _cell.angle_gamma 90 _cell.entry_id 5IJJ _cell.length_a 89.363 _cell.length_b 53.366 _cell.length_c 94.314 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IJJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,K 1 1 B,G,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C6 H18 O24 P6' _chem_comp.formula_weight 660.035 _chem_comp.id IHP _chem_comp.mon_nstd_flag . _chem_comp.name 'INOSITOL HEXAKISPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'MYO-INOSITOL HEXAKISPHOSPHATE;INOSITOL 1,2,3,4,5,6-HEXAKISPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IHP sing 167 n n C1 C6 IHP sing 168 n n C1 O11 IHP sing 169 n n C1 H1 IHP sing 170 n n C2 C3 IHP sing 171 n n C2 O12 IHP sing 172 n n C2 H2 IHP sing 173 n n C3 C4 IHP sing 174 n n C3 O13 IHP sing 175 n n C3 H3 IHP sing 176 n n C4 C5 IHP sing 177 n n C4 O14 IHP sing 178 n n C4 H4 IHP sing 179 n n C5 C6 IHP sing 180 n n C5 O15 IHP sing 181 n n C5 H5 IHP sing 182 n n C6 O16 IHP sing 183 n n C6 H6 IHP sing 184 n n O11 P1 IHP sing 185 n n P1 O21 IHP doub 186 n n P1 O31 IHP sing 187 n n P1 O41 IHP sing 188 n n O31 H31 IHP sing 189 n n O41 H41 IHP sing 190 n n O12 P2 IHP sing 191 n n P2 O22 IHP doub 192 n n P2 O32 IHP sing 193 n n P2 O42 IHP sing 194 n n O32 H32 IHP sing 195 n n O42 H42 IHP sing 196 n n O13 P3 IHP sing 197 n n P3 O23 IHP doub 198 n n P3 O33 IHP sing 199 n n P3 O43 IHP sing 200 n n O33 H33 IHP sing 201 n n O43 H43 IHP sing 202 n n O14 P4 IHP sing 203 n n P4 O24 IHP doub 204 n n P4 O34 IHP sing 205 n n P4 O44 IHP sing 206 n n O34 H34 IHP sing 207 n n O44 H44 IHP sing 208 n n O15 P5 IHP sing 209 n n P5 O25 IHP doub 210 n n P5 O35 IHP sing 211 n n P5 O45 IHP sing 212 n n O35 H35 IHP sing 213 n n O45 H45 IHP sing 214 n n O16 P6 IHP sing 215 n n P6 O26 IHP doub 216 n n P6 O36 IHP sing 217 n n P6 O46 IHP sing 218 n n O36 H36 IHP sing 219 n n O46 H46 IHP sing 220 n n # _atom_sites.entry_id 5IJJ _atom_sites.fract_transf_matrix[1][1] 0.01119 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004847 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018739 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011555 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IHP A 1 500 500 IHP I6P . D 3 EDO A 1 501 501 EDO EDO . E 3 EDO A 1 502 502 EDO EDO . F 4 ACT A 1 503 503 ACT ACT . G 2 IHP B 1 500 500 IHP I6P . H 2 IHP B 1 501 501 IHP I6P . I 3 EDO B 1 502 502 EDO EDO . J 3 EDO B 1 503 503 EDO EDO . K 5 HOH A 1 601 84 HOH HOH . K 5 HOH A 2 602 27 HOH HOH . K 5 HOH A 3 603 82 HOH HOH . K 5 HOH A 4 604 21 HOH HOH . K 5 HOH A 5 605 74 HOH HOH . K 5 HOH A 6 606 49 HOH HOH . K 5 HOH A 7 607 44 HOH HOH . K 5 HOH A 8 608 3 HOH HOH . K 5 HOH A 9 609 55 HOH HOH . K 5 HOH A 10 610 14 HOH HOH . K 5 HOH A 11 611 45 HOH HOH . K 5 HOH A 12 612 30 HOH HOH . K 5 HOH A 13 613 5 HOH HOH . K 5 HOH A 14 614 7 HOH HOH . K 5 HOH A 15 615 65 HOH HOH . K 5 HOH A 16 616 47 HOH HOH . K 5 HOH A 17 617 69 HOH HOH . K 5 HOH A 18 618 19 HOH HOH . K 5 HOH A 19 619 77 HOH HOH . K 5 HOH A 20 620 67 HOH HOH . K 5 HOH A 21 621 29 HOH HOH . K 5 HOH A 22 622 4 HOH HOH . K 5 HOH A 23 623 56 HOH HOH . K 5 HOH A 24 624 2 HOH HOH . K 5 HOH A 25 625 20 HOH HOH . K 5 HOH A 26 626 59 HOH HOH . K 5 HOH A 27 627 66 HOH HOH . K 5 HOH A 28 628 72 HOH HOH . K 5 HOH A 29 629 52 HOH HOH . K 5 HOH A 30 630 24 HOH HOH . K 5 HOH A 31 631 70 HOH HOH . K 5 HOH A 32 632 38 HOH HOH . K 5 HOH A 33 633 41 HOH HOH . K 5 HOH A 34 634 43 HOH HOH . K 5 HOH A 35 635 33 HOH HOH . K 5 HOH A 36 636 8 HOH HOH . K 5 HOH A 37 637 22 HOH HOH . K 5 HOH A 38 638 71 HOH HOH . K 5 HOH A 39 639 51 HOH HOH . K 5 HOH A 40 640 15 HOH HOH . K 5 HOH A 41 641 73 HOH HOH . K 5 HOH A 42 642 79 HOH HOH . L 5 HOH B 1 601 81 HOH HOH . L 5 HOH B 2 602 76 HOH HOH . L 5 HOH B 3 603 36 HOH HOH . L 5 HOH B 4 604 39 HOH HOH . L 5 HOH B 5 605 60 HOH HOH . L 5 HOH B 6 606 83 HOH HOH . L 5 HOH B 7 607 1 HOH HOH . L 5 HOH B 8 608 34 HOH HOH . L 5 HOH B 9 609 75 HOH HOH . L 5 HOH B 10 610 62 HOH HOH . L 5 HOH B 11 611 31 HOH HOH . L 5 HOH B 12 612 16 HOH HOH . L 5 HOH B 13 613 53 HOH HOH . L 5 HOH B 14 614 11 HOH HOH . L 5 HOH B 15 615 12 HOH HOH . L 5 HOH B 16 616 54 HOH HOH . L 5 HOH B 17 617 10 HOH HOH . L 5 HOH B 18 618 9 HOH HOH . L 5 HOH B 19 619 25 HOH HOH . L 5 HOH B 20 620 58 HOH HOH . L 5 HOH B 21 621 42 HOH HOH . L 5 HOH B 22 622 13 HOH HOH . L 5 HOH B 23 623 46 HOH HOH . L 5 HOH B 24 624 28 HOH HOH . L 5 HOH B 25 625 40 HOH HOH . L 5 HOH B 26 626 50 HOH HOH . L 5 HOH B 27 627 64 HOH HOH . L 5 HOH B 28 628 37 HOH HOH . L 5 HOH B 29 629 17 HOH HOH . L 5 HOH B 30 630 63 HOH HOH . L 5 HOH B 31 631 78 HOH HOH . L 5 HOH B 32 632 61 HOH HOH . L 5 HOH B 33 633 23 HOH HOH . L 5 HOH B 34 634 18 HOH HOH . L 5 HOH B 35 635 80 HOH HOH . L 5 HOH B 36 636 57 HOH HOH . L 5 HOH B 37 637 48 HOH HOH . L 5 HOH B 38 638 68 HOH HOH . L 5 HOH B 39 639 26 HOH HOH . L 5 HOH B 40 640 6 HOH HOH . L 5 HOH B 41 641 32 HOH HOH . L 5 HOH B 42 642 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IHP . . . H 2 -7.929 32.032 21.438 1 120.89 ? C1 IHP 501 B 1 HETATM 2 C C2 IHP . . . H 2 -7.363 31.532 20.101 1 124.33 ? C2 IHP 501 B 1 HETATM 3 C C3 IHP . . . H 2 -6.202 30.594 20.419 1 125.29 ? C3 IHP 501 B 1 HETATM 4 C C4 IHP . . . H 2 -6.775 29.427 21.22 1 126.46 ? C4 IHP 501 B 1 HETATM 5 C C5 IHP . . . H 2 -7.44 29.948 22.508 1 122.27 ? C5 IHP 501 B 1 HETATM 6 C C6 IHP . . . H 2 -8.62 30.848 22.095 1 114.92 ? C6 IHP 501 B 1 HETATM 7 O O11 IHP . . . H 2 -8.706 33.214 21.324 1 123.64 ? O11 IHP 501 B 1 HETATM 8 P P1 IHP . . . H 2 -8.131 34.603 21.913 1 130.51 ? P1 IHP 501 B 1 HETATM 9 O O21 IHP . . . H 2 -9.021 35.656 21.279 1 124.96 ? O21 IHP 501 B 1 HETATM 10 O O31 IHP . . . H 2 -8.311 34.382 23.4 1 119.91 ? O31 IHP 501 B 1 HETATM 11 O O41 IHP . . . H 2 -6.679 34.66 21.456 1 129.86 ? O41 IHP 501 B 1 HETATM 12 O O12 IHP . . . H 2 -6.988 32.619 19.267 1 130.16 ? O12 IHP 501 B 1 HETATM 13 P P2 IHP . . . H 2 -8.089 33.301 18.287 1 124.22 ? P2 IHP 501 B 1 HETATM 14 O O22 IHP . . . H 2 -8.049 34.767 18.645 1 124.44 ? O22 IHP 501 B 1 HETATM 15 O O32 IHP . . . H 2 -9.408 32.614 18.565 1 116.46 ? O32 IHP 501 B 1 HETATM 16 O O42 IHP . . . H 2 -7.538 33.023 16.914 1 132.31 ? O42 IHP 501 B 1 HETATM 17 O O13 IHP . . . H 2 -5.261 31.252 21.282 1 122.69 ? O13 IHP 501 B 1 HETATM 18 P P3 IHP . . . H 2 -3.832 31.916 20.988 1 111.48 ? P3 IHP 501 B 1 HETATM 19 O O23 IHP . . . H 2 -2.937 31.071 21.866 1 103.81 ? O23 IHP 501 B 1 HETATM 20 O O33 IHP . . . H 2 -3.644 31.729 19.499 1 113 ? O33 IHP 501 B 1 HETATM 21 O O43 IHP . . . H 2 -4.035 33.343 21.464 1 108.76 ? O43 IHP 501 B 1 HETATM 22 O O14 IHP . . . H 2 -5.739 28.507 21.526 1 134.97 ? O14 IHP 501 B 1 HETATM 23 P P4 IHP . . . H 2 -5.77 27.028 20.905 1 139.12 ? P4 IHP 501 B 1 HETATM 24 O O24 IHP . . . H 2 -4.522 26.401 21.485 1 142.63 ? O24 IHP 501 B 1 HETATM 25 O O34 IHP . . . H 2 -7.034 26.44 21.481 1 141.43 ? O34 IHP 501 B 1 HETATM 26 O O44 IHP . . . H 2 -5.769 27.3 19.416 1 131.76 ? O44 IHP 501 B 1 HETATM 27 O O15 IHP . . . H 2 -7.749 28.891 23.422 1 129.14 ? O15 IHP 501 B 1 HETATM 28 P P5 IHP . . . H 2 -6.952 28.831 24.839 1 133.19 ? P5 IHP 501 B 1 HETATM 29 O O25 IHP . . . H 2 -7.297 30.143 25.518 1 134.26 ? O25 IHP 501 B 1 HETATM 30 O O35 IHP . . . H 2 -5.493 28.676 24.46 1 133.71 ? O35 IHP 501 B 1 HETATM 31 O O45 IHP . . . H 2 -7.54 27.614 25.507 1 137.06 ? O45 IHP 501 B 1 HETATM 32 O O16 IHP . . . H 2 -9.442 31.26 23.177 1 103.95 ? O16 IHP 501 B 1 HETATM 33 P P6 IHP . . . H 2 -10.88 30.575 23.473 1 93.91 ? P6 IHP 501 B 1 HETATM 34 O O26 IHP . . . H 2 -10.699 29.105 23.175 1 99.79 ? O26 IHP 501 B 1 HETATM 35 O O36 IHP . . . H 2 -11.831 31.186 22.49 1 95.23 ? O36 IHP 501 B 1 HETATM 36 O O46 IHP . . . H 2 -11.12 30.969 24.912 1 94.63 ? O46 IHP 501 B 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 758 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 36 #