data_5IK0 # _model_server_result.job_id hB_JrwLfPUaVkc-jttFeiA _model_server_result.datetime_utc '2024-11-26 06:31:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ik0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 5IK0 # _exptl.entry_id 5IK0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IK0 _cell.length_a 127.66 _cell.length_b 127.66 _cell.length_c 124.67 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IK0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 303 A ASP 301 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc2 A OD2 ASP 303 A ASP 301 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? metalc ? metalc3 A OD2 ASP 303 A ASP 301 1_555 D MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc4 A OD2 ASP 307 A ASP 305 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? metalc ? metalc5 A OD2 ASP 307 A ASP 305 1_555 D MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc6 A OD2 ASP 446 A ASP 444 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? metalc ? metalc7 A OE2 GLU 454 A GLU 452 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? metalc ? metalc8 B MG MG . A MG 601 1_555 E O2A FPP . A FPP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc9 B MG MG . A MG 601 1_555 E O3B FPP . A FPP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc10 B MG MG . A MG 601 1_555 F O HOH . A HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc11 B MG MG . A MG 601 1_555 F O HOH . A HOH 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc12 C MG MG . A MG 602 1_555 E O1A FPP . A FPP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc13 C MG MG . A MG 602 1_555 E O1B FPP . A FPP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.983 ? metalc ? metalc14 C MG MG . A MG 602 1_555 F O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc15 C MG MG . A MG 602 1_555 F O HOH . A HOH 728 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc16 D MG MG . A MG 603 1_555 E O1A FPP . A FPP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5IK0 _atom_sites.fract_transf_matrix[1][1] 0.007833 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007833 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008021 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 601 1 MG MG . C 2 MG A 1 602 3 MG MG . D 2 MG A 1 603 2 MG MG . E 3 FPP A 1 604 549 FPP FPP . F 4 HOH A 1 701 111 HOH HOH . F 4 HOH A 2 702 10 HOH HOH . F 4 HOH A 3 703 88 HOH HOH . F 4 HOH A 4 704 40 HOH HOH . F 4 HOH A 5 705 81 HOH HOH . F 4 HOH A 6 706 90 HOH HOH . F 4 HOH A 7 707 63 HOH HOH . F 4 HOH A 8 708 99 HOH HOH . F 4 HOH A 9 709 92 HOH HOH . F 4 HOH A 10 710 107 HOH HOH . F 4 HOH A 11 711 54 HOH HOH . F 4 HOH A 12 712 110 HOH HOH . F 4 HOH A 13 713 39 HOH HOH . F 4 HOH A 14 714 43 HOH HOH . F 4 HOH A 15 715 16 HOH HOH . F 4 HOH A 16 716 86 HOH HOH . F 4 HOH A 17 717 109 HOH HOH . F 4 HOH A 18 718 19 HOH HOH . F 4 HOH A 19 719 45 HOH HOH . F 4 HOH A 20 720 31 HOH HOH . F 4 HOH A 21 721 52 HOH HOH . F 4 HOH A 22 722 46 HOH HOH . F 4 HOH A 23 723 36 HOH HOH . F 4 HOH A 24 724 67 HOH HOH . F 4 HOH A 25 725 61 HOH HOH . F 4 HOH A 26 726 66 HOH HOH . F 4 HOH A 27 727 22 HOH HOH . F 4 HOH A 28 728 83 HOH HOH . F 4 HOH A 29 729 13 HOH HOH . F 4 HOH A 30 730 59 HOH HOH . F 4 HOH A 31 731 8 HOH HOH . F 4 HOH A 32 732 14 HOH HOH . F 4 HOH A 33 733 55 HOH HOH . F 4 HOH A 34 734 30 HOH HOH . F 4 HOH A 35 735 15 HOH HOH . F 4 HOH A 36 736 6 HOH HOH . F 4 HOH A 37 737 4 HOH HOH . F 4 HOH A 38 738 38 HOH HOH . F 4 HOH A 39 739 5 HOH HOH . F 4 HOH A 40 740 64 HOH HOH . F 4 HOH A 41 741 34 HOH HOH . F 4 HOH A 42 742 7 HOH HOH . F 4 HOH A 43 743 3 HOH HOH . F 4 HOH A 44 744 35 HOH HOH . F 4 HOH A 45 745 29 HOH HOH . F 4 HOH A 46 746 105 HOH HOH . F 4 HOH A 47 747 23 HOH HOH . F 4 HOH A 48 748 24 HOH HOH . F 4 HOH A 49 749 62 HOH HOH . F 4 HOH A 50 750 58 HOH HOH . F 4 HOH A 51 751 42 HOH HOH . F 4 HOH A 52 752 106 HOH HOH . F 4 HOH A 53 753 85 HOH HOH . F 4 HOH A 54 754 96 HOH HOH . F 4 HOH A 55 755 51 HOH HOH . F 4 HOH A 56 756 71 HOH HOH . F 4 HOH A 57 757 104 HOH HOH . F 4 HOH A 58 758 32 HOH HOH . F 4 HOH A 59 759 12 HOH HOH . F 4 HOH A 60 760 25 HOH HOH . F 4 HOH A 61 761 95 HOH HOH . F 4 HOH A 62 762 72 HOH HOH . F 4 HOH A 63 763 44 HOH HOH . F 4 HOH A 64 764 65 HOH HOH . F 4 HOH A 65 765 69 HOH HOH . F 4 HOH A 66 766 47 HOH HOH . F 4 HOH A 67 767 9 HOH HOH . F 4 HOH A 68 768 70 HOH HOH . F 4 HOH A 69 769 76 HOH HOH . F 4 HOH A 70 770 60 HOH HOH . F 4 HOH A 71 771 82 HOH HOH . F 4 HOH A 72 772 1 HOH HOH . F 4 HOH A 73 773 53 HOH HOH . F 4 HOH A 74 774 56 HOH HOH . F 4 HOH A 75 775 68 HOH HOH . F 4 HOH A 76 776 11 HOH HOH . F 4 HOH A 77 777 94 HOH HOH . F 4 HOH A 78 778 100 HOH HOH . F 4 HOH A 79 779 73 HOH HOH . F 4 HOH A 80 780 103 HOH HOH . F 4 HOH A 81 781 2 HOH HOH . F 4 HOH A 82 782 57 HOH HOH . F 4 HOH A 83 783 93 HOH HOH . F 4 HOH A 84 784 98 HOH HOH . F 4 HOH A 85 785 17 HOH HOH . F 4 HOH A 86 786 21 HOH HOH . F 4 HOH A 87 787 26 HOH HOH . F 4 HOH A 88 788 27 HOH HOH . F 4 HOH A 89 789 48 HOH HOH . F 4 HOH A 90 790 80 HOH HOH . F 4 HOH A 91 791 89 HOH HOH . F 4 HOH A 92 792 101 HOH HOH . F 4 HOH A 93 793 79 HOH HOH . F 4 HOH A 94 794 33 HOH HOH . F 4 HOH A 95 795 37 HOH HOH . F 4 HOH A 96 796 87 HOH HOH . F 4 HOH A 97 797 102 HOH HOH . F 4 HOH A 98 798 75 HOH HOH . F 4 HOH A 99 799 108 HOH HOH . F 4 HOH A 100 800 91 HOH HOH . F 4 HOH A 101 801 78 HOH HOH . F 4 HOH A 102 802 50 HOH HOH . F 4 HOH A 103 803 97 HOH HOH . F 4 HOH A 104 804 77 HOH HOH . F 4 HOH A 105 805 41 HOH HOH . F 4 HOH A 106 806 84 HOH HOH . F 4 HOH A 107 807 49 HOH HOH . F 4 HOH A 108 808 20 HOH HOH . F 4 HOH A 109 809 18 HOH HOH . F 4 HOH A 110 810 74 HOH HOH . F 4 HOH A 111 811 28 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 20.232 _atom_site.Cartn_y 85.655 _atom_site.Cartn_z 11.755 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 82.28 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 602 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #