data_5IK0
#
_model_server_result.job_id            uaQDU4gdpvbPeEpqQEGzcA 
_model_server_result.datetime_utc      '2024-11-29 17:21:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ik0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":604}' 
#
_entry.id    5IK0 
#
_exptl.entry_id    5IK0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              382.326 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FARNESYL DIPHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5IK0 
_cell.length_a            127.66 
_cell.length_b            127.66 
_cell.length_c            124.67 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5IK0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 303 A ASP 301 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc2 A OD2 ASP 303 A ASP 301 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? 
metalc ? metalc3 A OD2 ASP 303 A ASP 301 1_555 D MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? 
metalc ? metalc4 A OD2 ASP 307 A ASP 305 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? 
metalc ? metalc5 A OD2 ASP 307 A ASP 305 1_555 D MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? 
metalc ? metalc6 A OD2 ASP 446 A ASP 444 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? 
metalc ? metalc7 A OE2 GLU 454 A GLU 452 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? 
metalc ? metalc8 B MG MG . A MG 601 1_555 E O2A FPP . A FPP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? 
metalc ? metalc9 B MG MG . A MG 601 1_555 E O3B FPP . A FPP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc10 B MG MG . A MG 601 1_555 F O HOH . A HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc11 B MG MG . A MG 601 1_555 F O HOH . A HOH 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc12 C MG MG . A MG 602 1_555 E O1A FPP . A FPP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc13 C MG MG . A MG 602 1_555 E O1B FPP . A FPP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.983 ? 
metalc ? metalc14 C MG MG . A MG 602 1_555 F O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc15 C MG MG . A MG 602 1_555 F O HOH . A HOH 728 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
metalc ? metalc16 D MG MG . A MG 603 1_555 E O1A FPP . A FPP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
#
_chem_comp.formula           'C15 H28 O7 P2' 
_chem_comp.formula_weight    382.326 
_chem_comp.id                FPP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FARNESYL DIPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 FPP sing 83 n n 
C1 C2 FPP sing 84 n n 
C1 H11 FPP sing 85 n n 
C1 H12A FPP sing 86 n n 
O1 PA FPP sing 87 n n 
C2 C3 FPP doub 88 e n 
C2 H2 FPP sing 89 n n 
C3 C4 FPP sing 90 n n 
C3 C5 FPP sing 91 n n 
C4 H41 FPP sing 92 n n 
C4 H42 FPP sing 93 n n 
C4 H43 FPP sing 94 n n 
C5 C6 FPP sing 95 n n 
C5 H51 FPP sing 96 n n 
C5 H52 FPP sing 97 n n 
C6 C7 FPP sing 98 n n 
C6 H61 FPP sing 99 n n 
C6 H62 FPP sing 100 n n 
C7 C8 FPP doub 101 e n 
C7 H7 FPP sing 102 n n 
C8 C10 FPP sing 103 n n 
C8 C9 FPP sing 104 n n 
C10 H101 FPP sing 105 n n 
C10 H102 FPP sing 106 n n 
C10 H103 FPP sing 107 n n 
C9 C11 FPP sing 108 n n 
C9 H91 FPP sing 109 n n 
C9 H92 FPP sing 110 n n 
C11 C12 FPP sing 111 n n 
C11 H111 FPP sing 112 n n 
C11 H112 FPP sing 113 n n 
C12 C13 FPP doub 114 n n 
C12 H12 FPP sing 115 n n 
C13 C14 FPP sing 116 n n 
C13 C15 FPP sing 117 n n 
C14 H141 FPP sing 118 n n 
C14 H142 FPP sing 119 n n 
C14 H143 FPP sing 120 n n 
C15 H151 FPP sing 121 n n 
C15 H152 FPP sing 122 n n 
C15 H153 FPP sing 123 n n 
PA O1A FPP doub 124 n n 
PA O2A FPP sing 125 n n 
PA O3A FPP sing 126 n n 
O2A HOA2 FPP sing 127 n n 
O3A PB FPP sing 128 n n 
PB O1B FPP doub 129 n n 
PB O2B FPP sing 130 n n 
PB O3B FPP sing 131 n n 
O2B HOB2 FPP sing 132 n n 
O3B HOB3 FPP sing 133 n n 
#
_atom_sites.entry_id                     5IK0 
_atom_sites.fract_transf_matrix[1][1]    0.007833 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007833 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008021 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 601 1 MG MG . 
C 2 MG A 1 602 3 MG MG . 
D 2 MG A 1 603 2 MG MG . 
E 3 FPP A 1 604 549 FPP FPP . 
F 4 HOH A 1 701 111 HOH HOH . 
F 4 HOH A 2 702 10 HOH HOH . 
F 4 HOH A 3 703 88 HOH HOH . 
F 4 HOH A 4 704 40 HOH HOH . 
F 4 HOH A 5 705 81 HOH HOH . 
F 4 HOH A 6 706 90 HOH HOH . 
F 4 HOH A 7 707 63 HOH HOH . 
F 4 HOH A 8 708 99 HOH HOH . 
F 4 HOH A 9 709 92 HOH HOH . 
F 4 HOH A 10 710 107 HOH HOH . 
F 4 HOH A 11 711 54 HOH HOH . 
F 4 HOH A 12 712 110 HOH HOH . 
F 4 HOH A 13 713 39 HOH HOH . 
F 4 HOH A 14 714 43 HOH HOH . 
F 4 HOH A 15 715 16 HOH HOH . 
F 4 HOH A 16 716 86 HOH HOH . 
F 4 HOH A 17 717 109 HOH HOH . 
F 4 HOH A 18 718 19 HOH HOH . 
F 4 HOH A 19 719 45 HOH HOH . 
F 4 HOH A 20 720 31 HOH HOH . 
F 4 HOH A 21 721 52 HOH HOH . 
F 4 HOH A 22 722 46 HOH HOH . 
F 4 HOH A 23 723 36 HOH HOH . 
F 4 HOH A 24 724 67 HOH HOH . 
F 4 HOH A 25 725 61 HOH HOH . 
F 4 HOH A 26 726 66 HOH HOH . 
F 4 HOH A 27 727 22 HOH HOH . 
F 4 HOH A 28 728 83 HOH HOH . 
F 4 HOH A 29 729 13 HOH HOH . 
F 4 HOH A 30 730 59 HOH HOH . 
F 4 HOH A 31 731 8 HOH HOH . 
F 4 HOH A 32 732 14 HOH HOH . 
F 4 HOH A 33 733 55 HOH HOH . 
F 4 HOH A 34 734 30 HOH HOH . 
F 4 HOH A 35 735 15 HOH HOH . 
F 4 HOH A 36 736 6 HOH HOH . 
F 4 HOH A 37 737 4 HOH HOH . 
F 4 HOH A 38 738 38 HOH HOH . 
F 4 HOH A 39 739 5 HOH HOH . 
F 4 HOH A 40 740 64 HOH HOH . 
F 4 HOH A 41 741 34 HOH HOH . 
F 4 HOH A 42 742 7 HOH HOH . 
F 4 HOH A 43 743 3 HOH HOH . 
F 4 HOH A 44 744 35 HOH HOH . 
F 4 HOH A 45 745 29 HOH HOH . 
F 4 HOH A 46 746 105 HOH HOH . 
F 4 HOH A 47 747 23 HOH HOH . 
F 4 HOH A 48 748 24 HOH HOH . 
F 4 HOH A 49 749 62 HOH HOH . 
F 4 HOH A 50 750 58 HOH HOH . 
F 4 HOH A 51 751 42 HOH HOH . 
F 4 HOH A 52 752 106 HOH HOH . 
F 4 HOH A 53 753 85 HOH HOH . 
F 4 HOH A 54 754 96 HOH HOH . 
F 4 HOH A 55 755 51 HOH HOH . 
F 4 HOH A 56 756 71 HOH HOH . 
F 4 HOH A 57 757 104 HOH HOH . 
F 4 HOH A 58 758 32 HOH HOH . 
F 4 HOH A 59 759 12 HOH HOH . 
F 4 HOH A 60 760 25 HOH HOH . 
F 4 HOH A 61 761 95 HOH HOH . 
F 4 HOH A 62 762 72 HOH HOH . 
F 4 HOH A 63 763 44 HOH HOH . 
F 4 HOH A 64 764 65 HOH HOH . 
F 4 HOH A 65 765 69 HOH HOH . 
F 4 HOH A 66 766 47 HOH HOH . 
F 4 HOH A 67 767 9 HOH HOH . 
F 4 HOH A 68 768 70 HOH HOH . 
F 4 HOH A 69 769 76 HOH HOH . 
F 4 HOH A 70 770 60 HOH HOH . 
F 4 HOH A 71 771 82 HOH HOH . 
F 4 HOH A 72 772 1 HOH HOH . 
F 4 HOH A 73 773 53 HOH HOH . 
F 4 HOH A 74 774 56 HOH HOH . 
F 4 HOH A 75 775 68 HOH HOH . 
F 4 HOH A 76 776 11 HOH HOH . 
F 4 HOH A 77 777 94 HOH HOH . 
F 4 HOH A 78 778 100 HOH HOH . 
F 4 HOH A 79 779 73 HOH HOH . 
F 4 HOH A 80 780 103 HOH HOH . 
F 4 HOH A 81 781 2 HOH HOH . 
F 4 HOH A 82 782 57 HOH HOH . 
F 4 HOH A 83 783 93 HOH HOH . 
F 4 HOH A 84 784 98 HOH HOH . 
F 4 HOH A 85 785 17 HOH HOH . 
F 4 HOH A 86 786 21 HOH HOH . 
F 4 HOH A 87 787 26 HOH HOH . 
F 4 HOH A 88 788 27 HOH HOH . 
F 4 HOH A 89 789 48 HOH HOH . 
F 4 HOH A 90 790 80 HOH HOH . 
F 4 HOH A 91 791 89 HOH HOH . 
F 4 HOH A 92 792 101 HOH HOH . 
F 4 HOH A 93 793 79 HOH HOH . 
F 4 HOH A 94 794 33 HOH HOH . 
F 4 HOH A 95 795 37 HOH HOH . 
F 4 HOH A 96 796 87 HOH HOH . 
F 4 HOH A 97 797 102 HOH HOH . 
F 4 HOH A 98 798 75 HOH HOH . 
F 4 HOH A 99 799 108 HOH HOH . 
F 4 HOH A 100 800 91 HOH HOH . 
F 4 HOH A 101 801 78 HOH HOH . 
F 4 HOH A 102 802 50 HOH HOH . 
F 4 HOH A 103 803 97 HOH HOH . 
F 4 HOH A 104 804 77 HOH HOH . 
F 4 HOH A 105 805 41 HOH HOH . 
F 4 HOH A 106 806 84 HOH HOH . 
F 4 HOH A 107 807 49 HOH HOH . 
F 4 HOH A 108 808 20 HOH HOH . 
F 4 HOH A 109 809 18 HOH HOH . 
F 4 HOH A 110 810 74 HOH HOH . 
F 4 HOH A 111 811 28 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 FPP . . . E 3 22.383 80.759 11.177 1 112.35 ? C1 FPP 604 A 1 
HETATM 2 O O1 FPP . . . E 3 21.649 81.57 10.252 1 115.94 ? O1 FPP 604 A 1 
HETATM 3 C C2 FPP . . . E 3 21.377 80.028 12.03 1 110.04 ? C2 FPP 604 A 1 
HETATM 4 C C3 FPP . . . E 3 21.383 80.104 13.371 1 106.38 ? C3 FPP 604 A 1 
HETATM 5 C C4 FPP . . . E 3 22.404 80.951 14.08 1 104.38 ? C4 FPP 604 A 1 
HETATM 6 C C5 FPP . . . E 3 20.311 79.342 14.124 1 104 ? C5 FPP 604 A 1 
HETATM 7 C C6 FPP . . . E 3 20.761 78.782 15.47 1 99.31 ? C6 FPP 604 A 1 
HETATM 8 C C7 FPP . . . E 3 21.915 77.829 15.29 1 93.92 ? C7 FPP 604 A 1 
HETATM 9 C C8 FPP . . . E 3 22.839 77.743 16.254 1 90.4 ? C8 FPP 604 A 1 
HETATM 10 C C10 FPP . . . E 3 22.692 78.578 17.49 1 88.05 ? C10 FPP 604 A 1 
HETATM 11 C C9 FPP . . . E 3 24.02 76.815 16.089 1 84.82 ? C9 FPP 604 A 1 
HETATM 12 C C11 FPP . . . E 3 24.757 77.32 14.853 1 84.97 ? C11 FPP 604 A 1 
HETATM 13 C C12 FPP . . . E 3 25.064 78.803 14.941 1 82.09 ? C12 FPP 604 A 1 
HETATM 14 C C13 FPP . . . E 3 25.702 79.414 13.929 1 72.44 ? C13 FPP 604 A 1 
HETATM 15 C C14 FPP . . . E 3 26.025 80.881 13.959 1 64.51 ? C14 FPP 604 A 1 
HETATM 16 C C15 FPP . . . E 3 26.091 78.597 12.742 1 69.81 ? C15 FPP 604 A 1 
HETATM 17 P PA FPP . . . E 3 21.936 83.161 10.223 1 127.3 ? PA FPP 604 A 1 
HETATM 18 O O1A FPP . . . E 3 20.706 83.918 10.682 1 123.97 ? O1A FPP 604 A 1 
HETATM 19 O O2A FPP . . . E 3 22.55 83.511 8.889 1 125.52 ? O2A FPP 604 A 1 
HETATM 20 O O3A FPP . . . E 3 23.061 83.217 11.382 1 202.38 ? O3A FPP 604 A 1 
HETATM 21 P PB FPP . . . E 3 24.104 84.432 11.567 1 129.83 ? PB FPP 604 A 1 
HETATM 22 O O1B FPP . . . E 3 23.215 85.635 11.784 1 132.11 ? O1B FPP 604 A 1 
HETATM 23 O O2B FPP . . . E 3 24.915 84.013 12.773 1 126.78 ? O2B FPP 604 A 1 
HETATM 24 O O3B FPP . . . E 3 24.885 84.457 10.272 1 127.83 ? O3B FPP 604 A 1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           673 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           24 
#