data_5IKH # _model_server_result.job_id UTixvDTC8wqyROAzH45sEg _model_server_result.datetime_utc '2024-10-19 08:25:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ikh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5IKH # _exptl.entry_id 5IKH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 204.351 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R,5S,10R)-6,10-dimethyl-2-(prop-1-en-2-yl)spiro[4.5]dec-6-ene _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IKH _cell.length_a 126.19 _cell.length_b 126.19 _cell.length_c 122.12 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IKH _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 303 A ASP 301 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc2 A OD2 ASP 307 A ASP 305 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc3 A OD2 ASP 446 A ASP 444 1_555 D MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.962 ? metalc ? metalc4 C MG MG . A MG 602 1_555 E O HOH . A HOH 727 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? # _chem_comp.formula 'C15 H24' _chem_comp.formula_weight 204.351 _chem_comp.id 6BW _chem_comp.mon_nstd_flag . _chem_comp.name (2R,5S,10R)-6,10-dimethyl-2-(prop-1-en-2-yl)spiro[4.5]dec-6-ene _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C09 C07 6BW sing 1 n n C07 C08 6BW doub 2 n n C07 C06 6BW sing 3 n n C11 C06 6BW sing 4 n n C11 C10 6BW sing 5 n n C06 C05 6BW sing 6 n n C10 C04 6BW sing 7 n n C13 C12 6BW sing 8 n n C05 C04 6BW sing 9 n n C04 C12 6BW sing 10 n n C04 C03 6BW sing 11 n n C12 C14 6BW sing 12 n n C03 C15 6BW sing 13 n n C03 C02 6BW doub 14 n n C14 C01 6BW sing 15 n n C01 C02 6BW sing 16 n n C01 H1 6BW sing 17 n n C01 H2 6BW sing 18 n n C02 H3 6BW sing 19 n n C05 H4 6BW sing 20 n n C05 H5 6BW sing 21 n n C06 H6 6BW sing 22 n n C08 H7 6BW sing 23 n n C08 H8 6BW sing 24 n n C09 H9 6BW sing 25 n n C09 H10 6BW sing 26 n n C09 H11 6BW sing 27 n n C10 H12 6BW sing 28 n n C10 H13 6BW sing 29 n n C11 H14 6BW sing 30 n n C11 H15 6BW sing 31 n n C12 H16 6BW sing 32 n n C13 H17 6BW sing 33 n n C13 H18 6BW sing 34 n n C13 H19 6BW sing 35 n n C14 H20 6BW sing 36 n n C14 H21 6BW sing 37 n n C15 H22 6BW sing 38 n n C15 H23 6BW sing 39 n n C15 H24 6BW sing 40 n n # _atom_sites.entry_id 5IKH _atom_sites.fract_transf_matrix[1][1] 0.007925 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007925 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008189 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6BW A 1 601 600 6BW PRM . C 3 MG A 1 602 1 MG MG . D 3 MG A 1 603 2 MG MG . E 4 HOH A 1 701 162 HOH HOH . E 4 HOH A 2 702 123 HOH HOH . E 4 HOH A 3 703 91 HOH HOH . E 4 HOH A 4 704 153 HOH HOH . E 4 HOH A 5 705 160 HOH HOH . E 4 HOH A 6 706 74 HOH HOH . E 4 HOH A 7 707 93 HOH HOH . E 4 HOH A 8 708 138 HOH HOH . E 4 HOH A 9 709 68 HOH HOH . E 4 HOH A 10 710 85 HOH HOH . E 4 HOH A 11 711 76 HOH HOH . E 4 HOH A 12 712 119 HOH HOH . E 4 HOH A 13 713 175 HOH HOH . E 4 HOH A 14 714 92 HOH HOH . E 4 HOH A 15 715 146 HOH HOH . E 4 HOH A 16 716 143 HOH HOH . E 4 HOH A 17 717 163 HOH HOH . E 4 HOH A 18 718 79 HOH HOH . E 4 HOH A 19 719 118 HOH HOH . E 4 HOH A 20 720 173 HOH HOH . E 4 HOH A 21 721 170 HOH HOH . E 4 HOH A 22 722 124 HOH HOH . E 4 HOH A 23 723 113 HOH HOH . E 4 HOH A 24 724 179 HOH HOH . E 4 HOH A 25 725 126 HOH HOH . E 4 HOH A 26 726 44 HOH HOH . E 4 HOH A 27 727 148 HOH HOH . E 4 HOH A 28 728 69 HOH HOH . E 4 HOH A 29 729 94 HOH HOH . E 4 HOH A 30 730 182 HOH HOH . E 4 HOH A 31 731 115 HOH HOH . E 4 HOH A 32 732 1 HOH HOH . E 4 HOH A 33 733 2 HOH HOH . E 4 HOH A 34 734 38 HOH HOH . E 4 HOH A 35 735 116 HOH HOH . E 4 HOH A 36 736 120 HOH HOH . E 4 HOH A 37 737 171 HOH HOH . E 4 HOH A 38 738 109 HOH HOH . E 4 HOH A 39 739 125 HOH HOH . E 4 HOH A 40 740 19 HOH HOH . E 4 HOH A 41 741 30 HOH HOH . E 4 HOH A 42 742 45 HOH HOH . E 4 HOH A 43 743 42 HOH HOH . E 4 HOH A 44 744 13 HOH HOH . E 4 HOH A 45 745 135 HOH HOH . E 4 HOH A 46 746 8 HOH HOH . E 4 HOH A 47 747 7 HOH HOH . E 4 HOH A 48 748 164 HOH HOH . E 4 HOH A 49 749 31 HOH HOH . E 4 HOH A 50 750 129 HOH HOH . E 4 HOH A 51 751 6 HOH HOH . E 4 HOH A 52 752 23 HOH HOH . E 4 HOH A 53 753 58 HOH HOH . E 4 HOH A 54 754 40 HOH HOH . E 4 HOH A 55 755 83 HOH HOH . E 4 HOH A 56 756 134 HOH HOH . E 4 HOH A 57 757 65 HOH HOH . E 4 HOH A 58 758 108 HOH HOH . E 4 HOH A 59 759 95 HOH HOH . E 4 HOH A 60 760 70 HOH HOH . E 4 HOH A 61 761 46 HOH HOH . E 4 HOH A 62 762 66 HOH HOH . E 4 HOH A 63 763 88 HOH HOH . E 4 HOH A 64 764 137 HOH HOH . E 4 HOH A 65 765 17 HOH HOH . E 4 HOH A 66 766 35 HOH HOH . E 4 HOH A 67 767 39 HOH HOH . E 4 HOH A 68 768 166 HOH HOH . E 4 HOH A 69 769 131 HOH HOH . E 4 HOH A 70 770 140 HOH HOH . E 4 HOH A 71 771 14 HOH HOH . E 4 HOH A 72 772 33 HOH HOH . E 4 HOH A 73 773 48 HOH HOH . E 4 HOH A 74 774 24 HOH HOH . E 4 HOH A 75 775 34 HOH HOH . E 4 HOH A 76 776 10 HOH HOH . E 4 HOH A 77 777 9 HOH HOH . E 4 HOH A 78 778 75 HOH HOH . E 4 HOH A 79 779 87 HOH HOH . E 4 HOH A 80 780 18 HOH HOH . E 4 HOH A 81 781 37 HOH HOH . E 4 HOH A 82 782 86 HOH HOH . E 4 HOH A 83 783 27 HOH HOH . E 4 HOH A 84 784 12 HOH HOH . E 4 HOH A 85 785 105 HOH HOH . E 4 HOH A 86 786 20 HOH HOH . E 4 HOH A 87 787 157 HOH HOH . E 4 HOH A 88 788 72 HOH HOH . E 4 HOH A 89 789 5 HOH HOH . E 4 HOH A 90 790 15 HOH HOH . E 4 HOH A 91 791 107 HOH HOH . E 4 HOH A 92 792 172 HOH HOH . E 4 HOH A 93 793 63 HOH HOH . E 4 HOH A 94 794 89 HOH HOH . E 4 HOH A 95 795 54 HOH HOH . E 4 HOH A 96 796 52 HOH HOH . E 4 HOH A 97 797 28 HOH HOH . E 4 HOH A 98 798 176 HOH HOH . E 4 HOH A 99 799 49 HOH HOH . E 4 HOH A 100 800 47 HOH HOH . E 4 HOH A 101 801 51 HOH HOH . E 4 HOH A 102 802 11 HOH HOH . E 4 HOH A 103 803 4 HOH HOH . E 4 HOH A 104 804 90 HOH HOH . E 4 HOH A 105 805 55 HOH HOH . E 4 HOH A 106 806 41 HOH HOH . E 4 HOH A 107 807 110 HOH HOH . E 4 HOH A 108 808 174 HOH HOH . E 4 HOH A 109 809 111 HOH HOH . E 4 HOH A 110 810 169 HOH HOH . E 4 HOH A 111 811 139 HOH HOH . E 4 HOH A 112 812 145 HOH HOH . E 4 HOH A 113 813 102 HOH HOH . E 4 HOH A 114 814 43 HOH HOH . E 4 HOH A 115 815 155 HOH HOH . E 4 HOH A 116 816 136 HOH HOH . E 4 HOH A 117 817 117 HOH HOH . E 4 HOH A 118 818 150 HOH HOH . E 4 HOH A 119 819 26 HOH HOH . E 4 HOH A 120 820 147 HOH HOH . E 4 HOH A 121 821 56 HOH HOH . E 4 HOH A 122 822 62 HOH HOH . E 4 HOH A 123 823 122 HOH HOH . E 4 HOH A 124 824 114 HOH HOH . E 4 HOH A 125 825 64 HOH HOH . E 4 HOH A 126 826 3 HOH HOH . E 4 HOH A 127 827 80 HOH HOH . E 4 HOH A 128 828 16 HOH HOH . E 4 HOH A 129 829 50 HOH HOH . E 4 HOH A 130 830 59 HOH HOH . E 4 HOH A 131 831 165 HOH HOH . E 4 HOH A 132 832 32 HOH HOH . E 4 HOH A 133 833 130 HOH HOH . E 4 HOH A 134 834 29 HOH HOH . E 4 HOH A 135 835 152 HOH HOH . E 4 HOH A 136 836 25 HOH HOH . E 4 HOH A 137 837 144 HOH HOH . E 4 HOH A 138 838 112 HOH HOH . E 4 HOH A 139 839 78 HOH HOH . E 4 HOH A 140 840 81 HOH HOH . E 4 HOH A 141 841 67 HOH HOH . E 4 HOH A 142 842 71 HOH HOH . E 4 HOH A 143 843 21 HOH HOH . E 4 HOH A 144 844 84 HOH HOH . E 4 HOH A 145 845 77 HOH HOH . E 4 HOH A 146 846 168 HOH HOH . E 4 HOH A 147 847 97 HOH HOH . E 4 HOH A 148 848 183 HOH HOH . E 4 HOH A 149 849 53 HOH HOH . E 4 HOH A 150 850 142 HOH HOH . E 4 HOH A 151 851 60 HOH HOH . E 4 HOH A 152 852 99 HOH HOH . E 4 HOH A 153 853 127 HOH HOH . E 4 HOH A 154 854 121 HOH HOH . E 4 HOH A 155 855 159 HOH HOH . E 4 HOH A 156 856 177 HOH HOH . E 4 HOH A 157 857 156 HOH HOH . E 4 HOH A 158 858 98 HOH HOH . E 4 HOH A 159 859 101 HOH HOH . E 4 HOH A 160 860 133 HOH HOH . E 4 HOH A 161 861 158 HOH HOH . E 4 HOH A 162 862 181 HOH HOH . E 4 HOH A 163 863 128 HOH HOH . E 4 HOH A 164 864 149 HOH HOH . E 4 HOH A 165 865 104 HOH HOH . E 4 HOH A 166 866 180 HOH HOH . E 4 HOH A 167 867 82 HOH HOH . E 4 HOH A 168 868 141 HOH HOH . E 4 HOH A 169 869 167 HOH HOH . E 4 HOH A 170 870 132 HOH HOH . E 4 HOH A 171 871 57 HOH HOH . E 4 HOH A 172 872 154 HOH HOH . E 4 HOH A 173 873 36 HOH HOH . E 4 HOH A 174 874 161 HOH HOH . E 4 HOH A 175 875 61 HOH HOH . E 4 HOH A 176 876 178 HOH HOH . E 4 HOH A 177 877 22 HOH HOH . E 4 HOH A 178 878 103 HOH HOH . E 4 HOH A 179 879 73 HOH HOH . E 4 HOH A 180 880 96 HOH HOH . E 4 HOH A 181 881 151 HOH HOH . E 4 HOH A 182 882 100 HOH HOH . E 4 HOH A 183 883 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 6BW . A . B 2 -9.815 44.217 -10.686 0.5 68.27 ? C01 6BW 601 A 1 HETATM 2 C C01 6BW . B . B 2 -10.069 44.067 -10.263 0.5 68.35 ? C01 6BW 601 A 1 HETATM 3 C C02 6BW . A . B 2 -9.63 42.728 -10.49 0.5 68.48 ? C02 6BW 601 A 1 HETATM 4 C C02 6BW . B . B 2 -9.869 42.567 -10.386 0.5 68.68 ? C02 6BW 601 A 1 HETATM 5 C C03 6BW . A . B 2 -10.182 41.863 -11.366 0.5 68.67 ? C03 6BW 601 A 1 HETATM 6 C C03 6BW . B . B 2 -10.248 41.817 -11.449 0.5 68.27 ? C03 6BW 601 A 1 HETATM 7 C C04 6BW . A . B 2 -10.98 42.365 -12.557 0.5 65.84 ? C04 6BW 601 A 1 HETATM 8 C C04 6BW . B . B 2 -10.942 42.413 -12.666 0.5 65.26 ? C04 6BW 601 A 1 HETATM 9 C C05 6BW . A . B 2 -12.223 41.678 -13.102 0.5 62.72 ? C05 6BW 601 A 1 HETATM 10 C C05 6BW . B . B 2 -12.239 41.869 -13.253 0.5 62.62 ? C05 6BW 601 A 1 HETATM 11 C C06 6BW . A . B 2 -12.018 41.504 -14.623 0.5 61.9 ? C06 6BW 601 A 1 HETATM 12 C C06 6BW . B . B 2 -11.992 41.525 -14.744 0.5 61.23 ? C06 6BW 601 A 1 HETATM 13 C C07 6BW . A . B 2 -12.85 40.408 -15.328 0.5 59.59 ? C07 6BW 601 A 1 HETATM 14 C C07 6BW . B . B 2 -12.873 40.43 -15.39 0.5 58.67 ? C07 6BW 601 A 1 HETATM 15 C C08 6BW . A . B 2 -12.582 39.106 -15.108 0.5 57.2 ? C08 6BW 601 A 1 HETATM 16 C C08 6BW . B . B 2 -12.77 39.146 -15.002 0.5 57.4 ? C08 6BW 601 A 1 HETATM 17 C C09 6BW . A . B 2 -13.75 40.802 -16.475 0.5 57.66 ? C09 6BW 601 A 1 HETATM 18 C C09 6BW . B . B 2 -13.737 40.792 -16.573 0.5 56.56 ? C09 6BW 601 A 1 HETATM 19 C C10 6BW . A . B 2 -9.907 42.218 -13.62 0.5 64.04 ? C10 6BW 601 A 1 HETATM 20 C C10 6BW . B . B 2 -9.859 42.173 -13.7 0.5 63.53 ? C10 6BW 601 A 1 HETATM 21 C C11 6BW . A . B 2 -10.487 41.346 -14.713 0.5 63.56 ? C11 6BW 601 A 1 HETATM 22 C C11 6BW . B . B 2 -10.465 41.309 -14.788 0.5 63.6 ? C11 6BW 601 A 1 HETATM 23 C C12 6BW . A . B 2 -11.683 43.695 -12.304 0.5 66.75 ? C12 6BW 601 A 1 HETATM 24 C C12 6BW . B . B 2 -11.446 43.817 -12.362 0.5 66.47 ? C12 6BW 601 A 1 HETATM 25 C C13 6BW . A . B 2 -11.319 44.713 -13.368 0.5 64.03 ? C13 6BW 601 A 1 HETATM 26 C C13 6BW . B . B 2 -11.772 44.651 -13.585 0.5 63.42 ? C13 6BW 601 A 1 HETATM 27 C C14 6BW . A . B 2 -11.307 44.273 -10.956 0.5 68.84 ? C14 6BW 601 A 1 HETATM 28 C C14 6BW . B . B 2 -10.324 44.546 -11.673 0.5 68.42 ? C14 6BW 601 A 1 HETATM 29 C C15 6BW . A . B 2 -9.998 40.376 -11.159 0.5 70.35 ? C15 6BW 601 A 1 HETATM 30 C C15 6BW . B . B 2 -9.974 40.331 -11.392 0.5 70.3 ? C15 6BW 601 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 415 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 30 #