data_5IKI # _model_server_result.job_id L6bV0Zndug5IsXMyRH8jeA _model_server_result.datetime_utc '2024-12-27 07:07:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5iki # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5IKI # _exptl.entry_id 5IKI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 72.37 _cell.angle_beta 75.19 _cell.angle_gamma 75.7 _cell.entry_id 5IKI _cell.length_a 48.91 _cell.length_b 57.39 _cell.length_c 84.24 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IKI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F 1 1 B,D,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 355 A CYS 355 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc2 B SG CYS 355 B CYS 355 1_555 D FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 183 n n CHA C4D HEM doub 184 n n CHA HHA HEM sing 185 n n CHB C4A HEM sing 186 n n CHB C1B HEM doub 187 n n CHB HHB HEM sing 188 n n CHC C4B HEM sing 189 n n CHC C1C HEM doub 190 n n CHC HHC HEM sing 191 n n CHD C4C HEM doub 192 n n CHD C1D HEM sing 193 n n CHD HHD HEM sing 194 n n C1A C2A HEM doub 195 n y C1A NA HEM sing 196 n y C2A C3A HEM sing 197 n y C2A CAA HEM sing 198 n n C3A C4A HEM doub 199 n y C3A CMA HEM sing 200 n n C4A NA HEM sing 201 n y CMA HMA HEM sing 202 n n CMA HMAA HEM sing 203 n n CMA HMAB HEM sing 204 n n CAA CBA HEM sing 205 n n CAA HAA HEM sing 206 n n CAA HAAA HEM sing 207 n n CBA CGA HEM sing 208 n n CBA HBA HEM sing 209 n n CBA HBAA HEM sing 210 n n CGA O1A HEM doub 211 n n CGA O2A HEM sing 212 n n C1B C2B HEM sing 213 n n C1B NB HEM sing 214 n n C2B C3B HEM doub 215 n n C2B CMB HEM sing 216 n n C3B C4B HEM sing 217 n n C3B CAB HEM sing 218 n n C4B NB HEM doub 219 n n CMB HMB HEM sing 220 n n CMB HMBA HEM sing 221 n n CMB HMBB HEM sing 222 n n CAB CBB HEM doub 223 n n CAB HAB HEM sing 224 n n CBB HBB HEM sing 225 n n CBB HBBA HEM sing 226 n n C1C C2C HEM sing 227 n y C1C NC HEM sing 228 n y C2C C3C HEM doub 229 n y C2C CMC HEM sing 230 n n C3C C4C HEM sing 231 n y C3C CAC HEM sing 232 n n C4C NC HEM sing 233 n y CMC HMC HEM sing 234 n n CMC HMCA HEM sing 235 n n CMC HMCB HEM sing 236 n n CAC CBC HEM doub 237 n n CAC HAC HEM sing 238 n n CBC HBC HEM sing 239 n n CBC HBCA HEM sing 240 n n C1D C2D HEM sing 241 n n C1D ND HEM doub 242 n n C2D C3D HEM doub 243 n n C2D CMD HEM sing 244 n n C3D C4D HEM sing 245 n n C3D CAD HEM sing 246 n n C4D ND HEM sing 247 n n CMD HMD HEM sing 248 n n CMD HMDA HEM sing 249 n n CMD HMDB HEM sing 250 n n CAD CBD HEM sing 251 n n CAD HAD HEM sing 252 n n CAD HADA HEM sing 253 n n CBD CGD HEM sing 254 n n CBD HBD HEM sing 255 n n CBD HBDA HEM sing 256 n n CGD O1D HEM doub 257 n n CGD O2D HEM sing 258 n n O2A H2A HEM sing 259 n n O2D H2D HEM sing 260 n n FE NA HEM sing 261 n n FE NB HEM sing 262 n n FE NC HEM sing 263 n n FE ND HEM sing 264 n n # _atom_sites.entry_id 5IKI _atom_sites.fract_transf_matrix[1][1] 0.020446 _atom_sites.fract_transf_matrix[1][2] -0.005212 _atom_sites.fract_transf_matrix[1][3] -0.004212 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017982 _atom_sites.fract_transf_matrix[2][3] -0.004762 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012702 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 501 410 HEM HEM . D 2 HEM B 1 501 410 HEM HEM . E 3 A9H B 1 502 1 A9H SYL . F 4 HOH A 1 601 31 HOH HOH . F 4 HOH A 2 602 39 HOH HOH . F 4 HOH A 3 603 51 HOH HOH . F 4 HOH A 4 604 20 HOH HOH . F 4 HOH A 5 605 54 HOH HOH . F 4 HOH A 6 606 25 HOH HOH . F 4 HOH A 7 607 48 HOH HOH . F 4 HOH A 8 608 33 HOH HOH . F 4 HOH A 9 609 45 HOH HOH . F 4 HOH A 10 610 43 HOH HOH . F 4 HOH A 11 611 32 HOH HOH . F 4 HOH A 12 612 30 HOH HOH . F 4 HOH A 13 613 55 HOH HOH . F 4 HOH A 14 614 11 HOH HOH . F 4 HOH A 15 615 29 HOH HOH . F 4 HOH A 16 616 52 HOH HOH . F 4 HOH A 17 617 41 HOH HOH . F 4 HOH A 18 618 12 HOH HOH . F 4 HOH A 19 619 42 HOH HOH . F 4 HOH A 20 620 2 HOH HOH . F 4 HOH A 21 621 3 HOH HOH . F 4 HOH A 22 622 15 HOH HOH . F 4 HOH A 23 623 21 HOH HOH . F 4 HOH A 24 624 19 HOH HOH . F 4 HOH A 25 625 24 HOH HOH . F 4 HOH A 26 626 9 HOH HOH . F 4 HOH A 27 627 26 HOH HOH . F 4 HOH A 28 628 50 HOH HOH . F 4 HOH A 29 629 34 HOH HOH . F 4 HOH A 30 630 6 HOH HOH . G 4 HOH B 1 601 35 HOH HOH . G 4 HOH B 2 602 16 HOH HOH . G 4 HOH B 3 603 37 HOH HOH . G 4 HOH B 4 604 8 HOH HOH . G 4 HOH B 5 605 17 HOH HOH . G 4 HOH B 6 606 44 HOH HOH . G 4 HOH B 7 607 46 HOH HOH . G 4 HOH B 8 608 38 HOH HOH . G 4 HOH B 9 609 5 HOH HOH . G 4 HOH B 10 610 40 HOH HOH . G 4 HOH B 11 611 22 HOH HOH . G 4 HOH B 12 612 13 HOH HOH . G 4 HOH B 13 613 10 HOH HOH . G 4 HOH B 14 614 4 HOH HOH . G 4 HOH B 15 615 53 HOH HOH . G 4 HOH B 16 616 47 HOH HOH . G 4 HOH B 17 617 28 HOH HOH . G 4 HOH B 18 618 23 HOH HOH . G 4 HOH B 19 619 14 HOH HOH . G 4 HOH B 20 620 18 HOH HOH . G 4 HOH B 21 621 1 HOH HOH . G 4 HOH B 22 622 7 HOH HOH . G 4 HOH B 23 623 49 HOH HOH . G 4 HOH B 24 624 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 14.331 -2.927 14.909 1 37.46 ? CHA HEM 501 A 1 HETATM 2 C CHB HEM . . . C 2 13.004 -7.599 15.19 1 37.13 ? CHB HEM 501 A 1 HETATM 3 C CHC HEM . . . C 2 16.245 -8.205 18.776 1 37.6 ? CHC HEM 501 A 1 HETATM 4 C CHD HEM . . . C 2 17.137 -3.461 18.77 1 42.39 ? CHD HEM 501 A 1 HETATM 5 C C1A HEM . . . C 2 13.737 -4.155 14.689 1 37.65 ? C1A HEM 501 A 1 HETATM 6 C C2A HEM . . . C 2 12.797 -4.378 13.672 1 39.35 ? C2A HEM 501 A 1 HETATM 7 C C3A HEM . . . C 2 12.428 -5.684 13.752 1 35.41 ? C3A HEM 501 A 1 HETATM 8 C C4A HEM . . . C 2 13.134 -6.277 14.799 1 35.2 ? C4A HEM 501 A 1 HETATM 9 C CMA HEM . . . C 2 11.459 -6.395 12.854 1 35.43 ? CMA HEM 501 A 1 HETATM 10 C CAA HEM . . . C 2 12.366 -3.364 12.635 1 41.31 ? CAA HEM 501 A 1 HETATM 11 C CBA HEM . . . C 2 11.35 -2.341 13.109 1 46.8 ? CBA HEM 501 A 1 HETATM 12 C CGA HEM . . . C 2 10.927 -1.457 11.953 1 49.1 ? CGA HEM 501 A 1 HETATM 13 O O1A HEM . . . C 2 11.327 -1.671 10.787 1 47.64 ? O1A HEM 501 A 1 HETATM 14 O O2A HEM . . . C 2 10.179 -0.48 12.186 1 52.83 ? O2A HEM 501 A 1 HETATM 15 C C1B HEM . . . C 2 13.805 -8.175 16.201 1 39.09 ? C1B HEM 501 A 1 HETATM 16 C C2B HEM . . . C 2 13.795 -9.558 16.524 1 34.77 ? C2B HEM 501 A 1 HETATM 17 C C3B HEM . . . C 2 14.699 -9.737 17.535 1 37.12 ? C3B HEM 501 A 1 HETATM 18 C C4B HEM . . . C 2 15.286 -8.415 17.804 1 36.43 ? C4B HEM 501 A 1 HETATM 19 C CMB HEM . . . C 2 12.938 -10.61 15.891 1 33.86 ? CMB HEM 501 A 1 HETATM 20 C CAB HEM . . . C 2 15.117 -10.968 18.221 1 38.25 ? CAB HEM 501 A 1 HETATM 21 C CBB HEM . . . C 2 14.819 -12.186 17.767 1 40.98 ? CBB HEM 501 A 1 HETATM 22 C C1C HEM . . . C 2 16.774 -6.966 19.11 1 39.9 ? C1C HEM 501 A 1 HETATM 23 C C2C HEM . . . C 2 17.71 -6.703 20.13 1 42.64 ? C2C HEM 501 A 1 HETATM 24 C C3C HEM . . . C 2 17.972 -5.33 20.127 1 42.01 ? C3C HEM 501 A 1 HETATM 25 C C4C HEM . . . C 2 17.174 -4.793 19.09 1 42.85 ? C4C HEM 501 A 1 HETATM 26 C CMC HEM . . . C 2 18.307 -7.791 21.007 1 42.42 ? CMC HEM 501 A 1 HETATM 27 C CAC HEM . . . C 2 18.86 -4.496 20.965 1 43.01 ? CAC HEM 501 A 1 HETATM 28 C CBC HEM . . . C 2 19.585 -4.984 21.958 1 49.89 ? CBC HEM 501 A 1 HETATM 29 C C1D HEM . . . C 2 16.424 -2.994 17.68 1 41.58 ? C1D HEM 501 A 1 HETATM 30 C C2D HEM . . . C 2 16.512 -1.565 17.352 1 39.66 ? C2D HEM 501 A 1 HETATM 31 C C3D HEM . . . C 2 15.753 -1.389 16.28 1 36.55 ? C3D HEM 501 A 1 HETATM 32 C C4D HEM . . . C 2 15.202 -2.731 15.961 1 37.48 ? C4D HEM 501 A 1 HETATM 33 C CMD HEM . . . C 2 17.309 -0.496 18.07 1 41.25 ? CMD HEM 501 A 1 HETATM 34 C CAD HEM . . . C 2 15.57 -0.057 15.606 1 37.42 ? CAD HEM 501 A 1 HETATM 35 C CBD HEM . . . C 2 16.319 -0.022 14.273 1 40.92 ? CBD HEM 501 A 1 HETATM 36 C CGD HEM . . . C 2 16.078 1.261 13.489 1 41.9 ? CGD HEM 501 A 1 HETATM 37 O O1D HEM . . . C 2 14.916 1.779 13.34 1 37.19 ? O1D HEM 501 A 1 HETATM 38 O O2D HEM . . . C 2 17.101 1.822 13.021 1 38.04 ? O2D HEM 501 A 1 HETATM 39 N NA HEM . . . C 2 13.924 -5.338 15.367 1 36.59 ? NA HEM 501 A 1 HETATM 40 N NB HEM . . . C 2 14.732 -7.553 16.967 1 37.01 ? NB HEM 501 A 1 HETATM 41 N NC HEM . . . C 2 16.461 -5.809 18.505 1 40.81 ? NC HEM 501 A 1 HETATM 42 N ND HEM . . . C 2 15.636 -3.68 16.824 1 37.35 ? ND HEM 501 A 1 HETATM 43 FE FE HEM . . . C 2 15.168 -5.521 16.912 1 38.27 ? FE HEM 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #