data_5IKI # _model_server_result.job_id 7HM1s9YAQ2ghW5FZNABN_g _model_server_result.datetime_utc '2024-12-27 06:04:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5iki # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":502}' # _entry.id 5IKI # _exptl.entry_id 5IKI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 302.451 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Abietic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 72.37 _cell.angle_beta 75.19 _cell.angle_gamma 75.7 _cell.entry_id 5IKI _cell.length_a 48.91 _cell.length_b 57.39 _cell.length_c 84.24 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IKI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F 1 1 B,D,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 355 A CYS 355 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc2 B SG CYS 355 B CYS 355 1_555 D FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? # _chem_comp.formula 'C20 H30 O2' _chem_comp.formula_weight 302.451 _chem_comp.id A9H _chem_comp.mon_nstd_flag . _chem_comp.name 'Abietic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C4 A9H sing 1 n n C5 C6 A9H sing 2 n n C4 C2 A9H sing 3 n n O2 C1 A9H doub 4 n n C6 C7 A9H sing 5 n n C2 C1 A9H sing 6 n n C2 C3 A9H sing 7 n n C2 C9 A9H sing 8 n n C1 O1 A9H sing 9 n n C7 C9 A9H sing 10 n n C7 C8 A9H sing 11 n n C7 C14 A9H sing 12 n n C9 C10 A9H sing 13 n n C14 C15 A9H sing 14 n n C14 C12 A9H sing 15 n n C15 C16 A9H sing 16 n n C16 C17 A9H sing 17 n n C10 C11 A9H sing 18 n n C12 C11 A9H doub 19 n n C12 C13 A9H sing 20 n n C17 C13 A9H doub 21 n n C17 C18 A9H sing 22 n n C19 C18 A9H sing 23 n n C18 C20 A9H sing 24 n n O1 H1 A9H sing 25 n n C3 H2 A9H sing 26 n n C3 H3 A9H sing 27 n n C3 H4 A9H sing 28 n n C4 H5 A9H sing 29 n n C4 H6 A9H sing 30 n n C5 H7 A9H sing 31 n n C5 H8 A9H sing 32 n n C6 H9 A9H sing 33 n n C6 H10 A9H sing 34 n n C8 H11 A9H sing 35 n n C8 H12 A9H sing 36 n n C8 H13 A9H sing 37 n n C9 H14 A9H sing 38 n n C10 H15 A9H sing 39 n n C10 H16 A9H sing 40 n n C11 H17 A9H sing 41 n n C13 H18 A9H sing 42 n n C14 H19 A9H sing 43 n n C15 H20 A9H sing 44 n n C15 H21 A9H sing 45 n n C16 H22 A9H sing 46 n n C16 H23 A9H sing 47 n n C18 H24 A9H sing 48 n n C19 H25 A9H sing 49 n n C19 H26 A9H sing 50 n n C19 H27 A9H sing 51 n n C20 H28 A9H sing 52 n n C20 H29 A9H sing 53 n n C20 H30 A9H sing 54 n n # _atom_sites.entry_id 5IKI _atom_sites.fract_transf_matrix[1][1] 0.020446 _atom_sites.fract_transf_matrix[1][2] -0.005212 _atom_sites.fract_transf_matrix[1][3] -0.004212 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017982 _atom_sites.fract_transf_matrix[2][3] -0.004762 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012702 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 501 410 HEM HEM . D 2 HEM B 1 501 410 HEM HEM . E 3 A9H B 1 502 1 A9H SYL . F 4 HOH A 1 601 31 HOH HOH . F 4 HOH A 2 602 39 HOH HOH . F 4 HOH A 3 603 51 HOH HOH . F 4 HOH A 4 604 20 HOH HOH . F 4 HOH A 5 605 54 HOH HOH . F 4 HOH A 6 606 25 HOH HOH . F 4 HOH A 7 607 48 HOH HOH . F 4 HOH A 8 608 33 HOH HOH . F 4 HOH A 9 609 45 HOH HOH . F 4 HOH A 10 610 43 HOH HOH . F 4 HOH A 11 611 32 HOH HOH . F 4 HOH A 12 612 30 HOH HOH . F 4 HOH A 13 613 55 HOH HOH . F 4 HOH A 14 614 11 HOH HOH . F 4 HOH A 15 615 29 HOH HOH . F 4 HOH A 16 616 52 HOH HOH . F 4 HOH A 17 617 41 HOH HOH . F 4 HOH A 18 618 12 HOH HOH . F 4 HOH A 19 619 42 HOH HOH . F 4 HOH A 20 620 2 HOH HOH . F 4 HOH A 21 621 3 HOH HOH . F 4 HOH A 22 622 15 HOH HOH . F 4 HOH A 23 623 21 HOH HOH . F 4 HOH A 24 624 19 HOH HOH . F 4 HOH A 25 625 24 HOH HOH . F 4 HOH A 26 626 9 HOH HOH . F 4 HOH A 27 627 26 HOH HOH . F 4 HOH A 28 628 50 HOH HOH . F 4 HOH A 29 629 34 HOH HOH . F 4 HOH A 30 630 6 HOH HOH . G 4 HOH B 1 601 35 HOH HOH . G 4 HOH B 2 602 16 HOH HOH . G 4 HOH B 3 603 37 HOH HOH . G 4 HOH B 4 604 8 HOH HOH . G 4 HOH B 5 605 17 HOH HOH . G 4 HOH B 6 606 44 HOH HOH . G 4 HOH B 7 607 46 HOH HOH . G 4 HOH B 8 608 38 HOH HOH . G 4 HOH B 9 609 5 HOH HOH . G 4 HOH B 10 610 40 HOH HOH . G 4 HOH B 11 611 22 HOH HOH . G 4 HOH B 12 612 13 HOH HOH . G 4 HOH B 13 613 10 HOH HOH . G 4 HOH B 14 614 4 HOH HOH . G 4 HOH B 15 615 53 HOH HOH . G 4 HOH B 16 616 47 HOH HOH . G 4 HOH B 17 617 28 HOH HOH . G 4 HOH B 18 618 23 HOH HOH . G 4 HOH B 19 619 14 HOH HOH . G 4 HOH B 20 620 18 HOH HOH . G 4 HOH B 21 621 1 HOH HOH . G 4 HOH B 22 622 7 HOH HOH . G 4 HOH B 23 623 49 HOH HOH . G 4 HOH B 24 624 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 A9H . . . E 3 -12.826 -3.479 -19.109 1 78.12 ? O1 A9H 502 B 1 HETATM 2 C C1 A9H . . . E 3 -11.879 -2.79 -18.661 1 75.94 ? C1 A9H 502 B 1 HETATM 3 O O2 A9H . . . E 3 -11.37 -2.909 -17.532 1 82.4 ? O2 A9H 502 B 1 HETATM 4 C C2 A9H . . . E 3 -11.339 -1.656 -19.527 1 71.77 ? C2 A9H 502 B 1 HETATM 5 C C3 A9H . . . E 3 -11.734 -1.935 -21.003 1 76.53 ? C3 A9H 502 B 1 HETATM 6 C C4 A9H . . . E 3 -9.813 -1.651 -19.437 1 66.67 ? C4 A9H 502 B 1 HETATM 7 C C5 A9H . . . E 3 -9.269 -0.387 -20.079 1 67.75 ? C5 A9H 502 B 1 HETATM 8 C C6 A9H . . . E 3 -9.777 0.863 -19.326 1 67.85 ? C6 A9H 502 B 1 HETATM 9 C C7 A9H . . . E 3 -11.297 1.014 -19.387 1 69.98 ? C7 A9H 502 B 1 HETATM 10 C C8 A9H . . . E 3 -11.733 1.387 -20.827 1 74.71 ? C8 A9H 502 B 1 HETATM 11 C C9 A9H . . . E 3 -11.945 -0.31 -18.883 1 70.91 ? C9 A9H 502 B 1 HETATM 12 C C10 A9H . . . E 3 -13.446 -0.241 -18.978 1 70.38 ? C10 A9H 502 B 1 HETATM 13 C C11 A9H . . . E 3 -13.912 1.003 -18.48 1 71.85 ? C11 A9H 502 B 1 HETATM 14 C C12 A9H . . . E 3 -13.138 2.14 -18.215 1 70.47 ? C12 A9H 502 B 1 HETATM 15 C C13 A9H . . . E 3 -13.765 3.295 -17.757 1 68.34 ? C13 A9H 502 B 1 HETATM 16 C C14 A9H . . . E 3 -11.737 2.136 -18.349 1 72.18 ? C14 A9H 502 B 1 HETATM 17 C C15 A9H . . . E 3 -11.229 3.528 -18.699 1 75.86 ? C15 A9H 502 B 1 HETATM 18 C C16 A9H . . . E 3 -11.599 4.472 -17.618 1 72.52 ? C16 A9H 502 B 1 HETATM 19 C C17 A9H . . . E 3 -13.022 4.453 -17.474 1 77.88 ? C17 A9H 502 B 1 HETATM 20 C C18 A9H . . . E 3 -13.698 5.603 -16.984 1 78.56 ? C18 A9H 502 B 1 HETATM 21 C C19 A9H . . . E 3 -14.382 5.311 -15.629 1 76.06 ? C19 A9H 502 B 1 HETATM 22 C C20 A9H . . . E 3 -14.726 6.11 -18.005 1 81.95 ? C20 A9H 502 B 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 22 #