data_5IKM # _model_server_result.job_id upfi4zYL-MOyBJ9Bv6Nh3g _model_server_result.datetime_utc '2024-11-10 01:23:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ikm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":309}' # _entry.id 5IKM # _exptl.entry_id 5IKM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IKM _cell.length_a 58.38 _cell.length_b 86.23 _cell.length_c 144.307 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IKM _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 224 A SER 221 1_555 A N CSO 225 A CSO 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C CSO 225 A CSO 222 1_555 A N GLY 226 A GLY 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 406 n n S O2 SO4 doub 407 n n S O3 SO4 sing 408 n n S O4 SO4 sing 409 n n # _atom_sites.entry_id 5IKM _atom_sites.fract_transf_matrix[1][1] 0.017129 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011597 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00693 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 301 1 CL CL . C 3 SO4 A 1 302 2 SO4 SO4 . D 3 SO4 A 1 303 3 SO4 SO4 . E 3 SO4 A 1 304 4 SO4 SO4 . F 3 SO4 A 1 305 5 SO4 SO4 . G 3 SO4 A 1 306 6 SO4 SO4 . H 3 SO4 A 1 307 7 SO4 SO4 . I 3 SO4 A 1 308 8 SO4 SO4 . J 3 SO4 A 1 309 9 SO4 SO4 . K 3 SO4 A 1 310 10 SO4 SO4 . L 4 SAM A 1 311 11 SAM SAM . M 5 BDF A 1 312 12 BDF BDF . N 6 MLT A 1 313 13 MLT MLT . O 7 GOL A 1 314 14 GOL GOL . P 8 HOH A 1 401 267 HOH HOH . P 8 HOH A 2 402 132 HOH HOH . P 8 HOH A 3 403 160 HOH HOH . P 8 HOH A 4 404 115 HOH HOH . P 8 HOH A 5 405 147 HOH HOH . P 8 HOH A 6 406 278 HOH HOH . P 8 HOH A 7 407 252 HOH HOH . P 8 HOH A 8 408 125 HOH HOH . P 8 HOH A 9 409 36 HOH HOH . P 8 HOH A 10 410 25 HOH HOH . P 8 HOH A 11 411 50 HOH HOH . P 8 HOH A 12 412 201 HOH HOH . P 8 HOH A 13 413 27 HOH HOH . P 8 HOH A 14 414 133 HOH HOH . P 8 HOH A 15 415 195 HOH HOH . P 8 HOH A 16 416 152 HOH HOH . P 8 HOH A 17 417 259 HOH HOH . P 8 HOH A 18 418 75 HOH HOH . P 8 HOH A 19 419 283 HOH HOH . P 8 HOH A 20 420 62 HOH HOH . P 8 HOH A 21 421 143 HOH HOH . P 8 HOH A 22 422 72 HOH HOH . P 8 HOH A 23 423 240 HOH HOH . P 8 HOH A 24 424 108 HOH HOH . P 8 HOH A 25 425 193 HOH HOH . P 8 HOH A 26 426 189 HOH HOH . P 8 HOH A 27 427 29 HOH HOH . P 8 HOH A 28 428 64 HOH HOH . P 8 HOH A 29 429 39 HOH HOH . P 8 HOH A 30 430 264 HOH HOH . P 8 HOH A 31 431 109 HOH HOH . P 8 HOH A 32 432 114 HOH HOH . P 8 HOH A 33 433 190 HOH HOH . P 8 HOH A 34 434 126 HOH HOH . P 8 HOH A 35 435 197 HOH HOH . P 8 HOH A 36 436 68 HOH HOH . P 8 HOH A 37 437 116 HOH HOH . P 8 HOH A 38 438 238 HOH HOH . P 8 HOH A 39 439 128 HOH HOH . P 8 HOH A 40 440 91 HOH HOH . P 8 HOH A 41 441 28 HOH HOH . P 8 HOH A 42 442 230 HOH HOH . P 8 HOH A 43 443 237 HOH HOH . P 8 HOH A 44 444 63 HOH HOH . P 8 HOH A 45 445 92 HOH HOH . P 8 HOH A 46 446 231 HOH HOH . P 8 HOH A 47 447 247 HOH HOH . P 8 HOH A 48 448 146 HOH HOH . P 8 HOH A 49 449 54 HOH HOH . P 8 HOH A 50 450 47 HOH HOH . P 8 HOH A 51 451 18 HOH HOH . P 8 HOH A 52 452 100 HOH HOH . P 8 HOH A 53 453 56 HOH HOH . P 8 HOH A 54 454 57 HOH HOH . P 8 HOH A 55 455 61 HOH HOH . P 8 HOH A 56 456 33 HOH HOH . P 8 HOH A 57 457 43 HOH HOH . P 8 HOH A 58 458 66 HOH HOH . P 8 HOH A 59 459 251 HOH HOH . P 8 HOH A 60 460 130 HOH HOH . P 8 HOH A 61 461 26 HOH HOH . P 8 HOH A 62 462 97 HOH HOH . P 8 HOH A 63 463 122 HOH HOH . P 8 HOH A 64 464 167 HOH HOH . P 8 HOH A 65 465 23 HOH HOH . P 8 HOH A 66 466 55 HOH HOH . P 8 HOH A 67 467 19 HOH HOH . P 8 HOH A 68 468 89 HOH HOH . P 8 HOH A 69 469 22 HOH HOH . P 8 HOH A 70 470 17 HOH HOH . P 8 HOH A 71 471 142 HOH HOH . P 8 HOH A 72 472 296 HOH HOH . P 8 HOH A 73 473 85 HOH HOH . P 8 HOH A 74 474 76 HOH HOH . P 8 HOH A 75 475 159 HOH HOH . P 8 HOH A 76 476 102 HOH HOH . P 8 HOH A 77 477 94 HOH HOH . P 8 HOH A 78 478 48 HOH HOH . P 8 HOH A 79 479 245 HOH HOH . P 8 HOH A 80 480 162 HOH HOH . P 8 HOH A 81 481 232 HOH HOH . P 8 HOH A 82 482 277 HOH HOH . P 8 HOH A 83 483 281 HOH HOH . P 8 HOH A 84 484 118 HOH HOH . P 8 HOH A 85 485 209 HOH HOH . P 8 HOH A 86 486 32 HOH HOH . P 8 HOH A 87 487 295 HOH HOH . P 8 HOH A 88 488 134 HOH HOH . P 8 HOH A 89 489 127 HOH HOH . P 8 HOH A 90 490 192 HOH HOH . P 8 HOH A 91 491 49 HOH HOH . P 8 HOH A 92 492 286 HOH HOH . P 8 HOH A 93 493 103 HOH HOH . P 8 HOH A 94 494 131 HOH HOH . P 8 HOH A 95 495 262 HOH HOH . P 8 HOH A 96 496 35 HOH HOH . P 8 HOH A 97 497 207 HOH HOH . P 8 HOH A 98 498 24 HOH HOH . P 8 HOH A 99 499 41 HOH HOH . P 8 HOH A 100 500 145 HOH HOH . P 8 HOH A 101 501 156 HOH HOH . P 8 HOH A 102 502 124 HOH HOH . P 8 HOH A 103 503 46 HOH HOH . P 8 HOH A 104 504 258 HOH HOH . P 8 HOH A 105 505 136 HOH HOH . P 8 HOH A 106 506 45 HOH HOH . P 8 HOH A 107 507 140 HOH HOH . P 8 HOH A 108 508 78 HOH HOH . P 8 HOH A 109 509 70 HOH HOH . P 8 HOH A 110 510 30 HOH HOH . P 8 HOH A 111 511 177 HOH HOH . P 8 HOH A 112 512 52 HOH HOH . P 8 HOH A 113 513 182 HOH HOH . P 8 HOH A 114 514 215 HOH HOH . P 8 HOH A 115 515 16 HOH HOH . P 8 HOH A 116 516 163 HOH HOH . P 8 HOH A 117 517 15 HOH HOH . P 8 HOH A 118 518 184 HOH HOH . P 8 HOH A 119 519 123 HOH HOH . P 8 HOH A 120 520 261 HOH HOH . P 8 HOH A 121 521 269 HOH HOH . P 8 HOH A 122 522 42 HOH HOH . P 8 HOH A 123 523 265 HOH HOH . P 8 HOH A 124 524 77 HOH HOH . P 8 HOH A 125 525 73 HOH HOH . P 8 HOH A 126 526 113 HOH HOH . P 8 HOH A 127 527 59 HOH HOH . P 8 HOH A 128 528 275 HOH HOH . P 8 HOH A 129 529 242 HOH HOH . P 8 HOH A 130 530 194 HOH HOH . P 8 HOH A 131 531 117 HOH HOH . P 8 HOH A 132 532 260 HOH HOH . P 8 HOH A 133 533 187 HOH HOH . P 8 HOH A 134 534 53 HOH HOH . P 8 HOH A 135 535 65 HOH HOH . P 8 HOH A 136 536 21 HOH HOH . P 8 HOH A 137 537 228 HOH HOH . P 8 HOH A 138 538 239 HOH HOH . P 8 HOH A 139 539 291 HOH HOH . P 8 HOH A 140 540 292 HOH HOH . P 8 HOH A 141 541 191 HOH HOH . P 8 HOH A 142 542 214 HOH HOH . P 8 HOH A 143 543 44 HOH HOH . P 8 HOH A 144 544 34 HOH HOH . P 8 HOH A 145 545 86 HOH HOH . P 8 HOH A 146 546 20 HOH HOH . P 8 HOH A 147 547 241 HOH HOH . P 8 HOH A 148 548 164 HOH HOH . P 8 HOH A 149 549 98 HOH HOH . P 8 HOH A 150 550 279 HOH HOH . P 8 HOH A 151 551 158 HOH HOH . P 8 HOH A 152 552 60 HOH HOH . P 8 HOH A 153 553 40 HOH HOH . P 8 HOH A 154 554 38 HOH HOH . P 8 HOH A 155 555 37 HOH HOH . P 8 HOH A 156 556 135 HOH HOH . P 8 HOH A 157 557 212 HOH HOH . P 8 HOH A 158 558 255 HOH HOH . P 8 HOH A 159 559 288 HOH HOH . P 8 HOH A 160 560 203 HOH HOH . P 8 HOH A 161 561 119 HOH HOH . P 8 HOH A 162 562 173 HOH HOH . P 8 HOH A 163 563 223 HOH HOH . P 8 HOH A 164 564 235 HOH HOH . P 8 HOH A 165 565 31 HOH HOH . P 8 HOH A 166 566 222 HOH HOH . P 8 HOH A 167 567 84 HOH HOH . P 8 HOH A 168 568 166 HOH HOH . P 8 HOH A 169 569 169 HOH HOH . P 8 HOH A 170 570 99 HOH HOH . P 8 HOH A 171 571 206 HOH HOH . P 8 HOH A 172 572 273 HOH HOH . P 8 HOH A 173 573 271 HOH HOH . P 8 HOH A 174 574 211 HOH HOH . P 8 HOH A 175 575 170 HOH HOH . P 8 HOH A 176 576 90 HOH HOH . P 8 HOH A 177 577 111 HOH HOH . P 8 HOH A 178 578 289 HOH HOH . P 8 HOH A 179 579 106 HOH HOH . P 8 HOH A 180 580 150 HOH HOH . P 8 HOH A 181 581 69 HOH HOH . P 8 HOH A 182 582 270 HOH HOH . P 8 HOH A 183 583 183 HOH HOH . P 8 HOH A 184 584 254 HOH HOH . P 8 HOH A 185 585 71 HOH HOH . P 8 HOH A 186 586 210 HOH HOH . P 8 HOH A 187 587 67 HOH HOH . P 8 HOH A 188 588 83 HOH HOH . P 8 HOH A 189 589 280 HOH HOH . P 8 HOH A 190 590 153 HOH HOH . P 8 HOH A 191 591 105 HOH HOH . P 8 HOH A 192 592 80 HOH HOH . P 8 HOH A 193 593 93 HOH HOH . P 8 HOH A 194 594 225 HOH HOH . P 8 HOH A 195 595 263 HOH HOH . P 8 HOH A 196 596 141 HOH HOH . P 8 HOH A 197 597 229 HOH HOH . P 8 HOH A 198 598 157 HOH HOH . P 8 HOH A 199 599 74 HOH HOH . P 8 HOH A 200 600 138 HOH HOH . P 8 HOH A 201 601 198 HOH HOH . P 8 HOH A 202 602 208 HOH HOH . P 8 HOH A 203 603 87 HOH HOH . P 8 HOH A 204 604 112 HOH HOH . P 8 HOH A 205 605 51 HOH HOH . P 8 HOH A 206 606 151 HOH HOH . P 8 HOH A 207 607 250 HOH HOH . P 8 HOH A 208 608 79 HOH HOH . P 8 HOH A 209 609 88 HOH HOH . P 8 HOH A 210 610 107 HOH HOH . P 8 HOH A 211 611 181 HOH HOH . P 8 HOH A 212 612 219 HOH HOH . P 8 HOH A 213 613 174 HOH HOH . P 8 HOH A 214 614 180 HOH HOH . P 8 HOH A 215 615 168 HOH HOH . P 8 HOH A 216 616 120 HOH HOH . P 8 HOH A 217 617 104 HOH HOH . P 8 HOH A 218 618 186 HOH HOH . P 8 HOH A 219 619 218 HOH HOH . P 8 HOH A 220 620 282 HOH HOH . P 8 HOH A 221 621 246 HOH HOH . P 8 HOH A 222 622 95 HOH HOH . P 8 HOH A 223 623 96 HOH HOH . P 8 HOH A 224 624 81 HOH HOH . P 8 HOH A 225 625 244 HOH HOH . P 8 HOH A 226 626 154 HOH HOH . P 8 HOH A 227 627 256 HOH HOH . P 8 HOH A 228 628 172 HOH HOH . P 8 HOH A 229 629 266 HOH HOH . P 8 HOH A 230 630 221 HOH HOH . P 8 HOH A 231 631 217 HOH HOH . P 8 HOH A 232 632 285 HOH HOH . P 8 HOH A 233 633 144 HOH HOH . P 8 HOH A 234 634 121 HOH HOH . P 8 HOH A 235 635 204 HOH HOH . P 8 HOH A 236 636 148 HOH HOH . P 8 HOH A 237 637 224 HOH HOH . P 8 HOH A 238 638 284 HOH HOH . P 8 HOH A 239 639 226 HOH HOH . P 8 HOH A 240 640 185 HOH HOH . P 8 HOH A 241 641 165 HOH HOH . P 8 HOH A 242 642 58 HOH HOH . P 8 HOH A 243 643 243 HOH HOH . P 8 HOH A 244 644 175 HOH HOH . P 8 HOH A 245 645 248 HOH HOH . P 8 HOH A 246 646 129 HOH HOH . P 8 HOH A 247 647 110 HOH HOH . P 8 HOH A 248 648 199 HOH HOH . P 8 HOH A 249 649 188 HOH HOH . P 8 HOH A 250 650 196 HOH HOH . P 8 HOH A 251 651 200 HOH HOH . P 8 HOH A 252 652 236 HOH HOH . P 8 HOH A 253 653 155 HOH HOH . P 8 HOH A 254 654 233 HOH HOH . P 8 HOH A 255 655 202 HOH HOH . P 8 HOH A 256 656 213 HOH HOH . P 8 HOH A 257 657 257 HOH HOH . P 8 HOH A 258 658 293 HOH HOH . P 8 HOH A 259 659 234 HOH HOH . P 8 HOH A 260 660 220 HOH HOH . P 8 HOH A 261 661 149 HOH HOH . P 8 HOH A 262 662 268 HOH HOH . P 8 HOH A 263 663 216 HOH HOH . P 8 HOH A 264 664 178 HOH HOH . P 8 HOH A 265 665 249 HOH HOH . P 8 HOH A 266 666 161 HOH HOH . P 8 HOH A 267 667 176 HOH HOH . P 8 HOH A 268 668 139 HOH HOH . P 8 HOH A 269 669 290 HOH HOH . P 8 HOH A 270 670 272 HOH HOH . P 8 HOH A 271 671 137 HOH HOH . P 8 HOH A 272 672 253 HOH HOH . P 8 HOH A 273 673 274 HOH HOH . P 8 HOH A 274 674 101 HOH HOH . P 8 HOH A 275 675 171 HOH HOH . P 8 HOH A 276 676 205 HOH HOH . P 8 HOH A 277 677 179 HOH HOH . P 8 HOH A 278 678 82 HOH HOH . P 8 HOH A 279 679 287 HOH HOH . P 8 HOH A 280 680 276 HOH HOH . P 8 HOH A 281 681 227 HOH HOH . P 8 HOH A 282 682 294 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . J 3 28.694 24.851 44.918 0.7 49.3 ? S SO4 309 A 1 HETATM 2 O O1 SO4 . . . J 3 29.425 26.025 44.404 0.7 51.77 ? O1 SO4 309 A 1 HETATM 3 O O2 SO4 . . . J 3 27.332 24.794 44.351 0.7 49.49 ? O2 SO4 309 A 1 HETATM 4 O O3 SO4 . . . J 3 29.43 23.638 44.503 0.7 51.44 ? O3 SO4 309 A 1 HETATM 5 O O4 SO4 . . . J 3 28.622 24.942 46.393 0.7 48.33 ? O4 SO4 309 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #