data_5IKO # _model_server_result.job_id Ns4TC1kwXN9wXFhv52XgRg _model_server_result.datetime_utc '2025-02-05 15:54:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5iko # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 5IKO # _exptl.entry_id 5IKO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.331 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEXAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5IKO _cell.length_a 171.66 _cell.length_b 171.66 _cell.length_c 122.92 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IKO _symmetry.cell_setting ? _symmetry.Int_Tables_number 177 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_785 -x+2,-y+3,z -1 0 0 0 -1 0 0 0 1 85.83 445.985762 0 3 'crystal symmetry operation' 9_767 -x+2,-x+y+1,-z+2 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 257.49 148.661921 245.84 4 'crystal symmetry operation' 12_577 x,x-y+2,-z+2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -171.66 297.323842 245.84 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 684 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 680 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 905 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.449 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C12 H26 O7' _chem_comp.formula_weight 282.331 _chem_comp.id P6G _chem_comp.mon_nstd_flag . _chem_comp.name 'HEXAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'POLYETHYLENE GLYCOL PEG400' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 P6G sing 237 n n O1 H1 P6G sing 238 n n C2 C3 P6G sing 239 n n C2 H21 P6G sing 240 n n C2 H22 P6G sing 241 n n C3 O4 P6G sing 242 n n C3 H31 P6G sing 243 n n C3 H32 P6G sing 244 n n O4 C5 P6G sing 245 n n C5 C6 P6G sing 246 n n C5 H51 P6G sing 247 n n C5 H52 P6G sing 248 n n C6 O7 P6G sing 249 n n C6 H61 P6G sing 250 n n C6 H62 P6G sing 251 n n O7 C8 P6G sing 252 n n C8 C9 P6G sing 253 n n C8 H81 P6G sing 254 n n C8 H82 P6G sing 255 n n C9 O10 P6G sing 256 n n C9 H91 P6G sing 257 n n C9 H92 P6G sing 258 n n O10 C11 P6G sing 259 n n C11 C12 P6G sing 260 n n C11 H111 P6G sing 261 n n C11 H112 P6G sing 262 n n C12 O13 P6G sing 263 n n C12 H121 P6G sing 264 n n C12 H122 P6G sing 265 n n O13 C14 P6G sing 266 n n C14 C15 P6G sing 267 n n C14 H141 P6G sing 268 n n C14 H142 P6G sing 269 n n C15 O16 P6G sing 270 n n C15 H151 P6G sing 271 n n C15 H152 P6G sing 272 n n O16 C17 P6G sing 273 n n C17 C18 P6G sing 274 n n C17 H171 P6G sing 275 n n C17 H172 P6G sing 276 n n C18 O19 P6G sing 277 n n C18 H181 P6G sing 278 n n C18 H182 P6G sing 279 n n O19 H19 P6G sing 280 n n # _atom_sites.entry_id 5IKO _atom_sites.fract_transf_matrix[1][1] 0.005825 _atom_sites.fract_transf_matrix[1][2] 0.003363 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006727 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008135 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 P6G A 1 901 1 P6G P6G . C 2 P6G A 1 902 2 P6G P6G . D 3 PO4 A 1 903 3 PO4 PO4 . E 3 PO4 A 1 904 4 PO4 PO4 . F 4 PLP A 1 905 680 PLP LLP . G 5 HOH A 1 1001 77 HOH HOH . G 5 HOH A 2 1002 17 HOH HOH . G 5 HOH A 3 1003 80 HOH HOH . G 5 HOH A 4 1004 73 HOH HOH . G 5 HOH A 5 1005 65 HOH HOH . G 5 HOH A 6 1006 83 HOH HOH . G 5 HOH A 7 1007 45 HOH HOH . G 5 HOH A 8 1008 52 HOH HOH . G 5 HOH A 9 1009 76 HOH HOH . G 5 HOH A 10 1010 6 HOH HOH . G 5 HOH A 11 1011 1 HOH HOH . G 5 HOH A 12 1012 51 HOH HOH . G 5 HOH A 13 1013 21 HOH HOH . G 5 HOH A 14 1014 3 HOH HOH . G 5 HOH A 15 1015 61 HOH HOH . G 5 HOH A 16 1016 53 HOH HOH . G 5 HOH A 17 1017 34 HOH HOH . G 5 HOH A 18 1018 14 HOH HOH . G 5 HOH A 19 1019 67 HOH HOH . G 5 HOH A 20 1020 43 HOH HOH . G 5 HOH A 21 1021 79 HOH HOH . G 5 HOH A 22 1022 71 HOH HOH . G 5 HOH A 23 1023 44 HOH HOH . G 5 HOH A 24 1024 15 HOH HOH . G 5 HOH A 25 1025 62 HOH HOH . G 5 HOH A 26 1026 60 HOH HOH . G 5 HOH A 27 1027 7 HOH HOH . G 5 HOH A 28 1028 46 HOH HOH . G 5 HOH A 29 1029 84 HOH HOH . G 5 HOH A 30 1030 9 HOH HOH . G 5 HOH A 31 1031 10 HOH HOH . G 5 HOH A 32 1032 57 HOH HOH . G 5 HOH A 33 1033 4 HOH HOH . G 5 HOH A 34 1034 64 HOH HOH . G 5 HOH A 35 1035 25 HOH HOH . G 5 HOH A 36 1036 70 HOH HOH . G 5 HOH A 37 1037 74 HOH HOH . G 5 HOH A 38 1038 20 HOH HOH . G 5 HOH A 39 1039 26 HOH HOH . G 5 HOH A 40 1040 58 HOH HOH . G 5 HOH A 41 1041 19 HOH HOH . G 5 HOH A 42 1042 78 HOH HOH . G 5 HOH A 43 1043 2 HOH HOH . G 5 HOH A 44 1044 27 HOH HOH . G 5 HOH A 45 1045 32 HOH HOH . G 5 HOH A 46 1046 82 HOH HOH . G 5 HOH A 47 1047 5 HOH HOH . G 5 HOH A 48 1048 30 HOH HOH . G 5 HOH A 49 1049 31 HOH HOH . G 5 HOH A 50 1050 24 HOH HOH . G 5 HOH A 51 1051 12 HOH HOH . G 5 HOH A 52 1052 63 HOH HOH . G 5 HOH A 53 1053 33 HOH HOH . G 5 HOH A 54 1054 55 HOH HOH . G 5 HOH A 55 1055 18 HOH HOH . G 5 HOH A 56 1056 49 HOH HOH . G 5 HOH A 57 1057 13 HOH HOH . G 5 HOH A 58 1058 56 HOH HOH . G 5 HOH A 59 1059 11 HOH HOH . G 5 HOH A 60 1060 8 HOH HOH . G 5 HOH A 61 1061 68 HOH HOH . G 5 HOH A 62 1062 54 HOH HOH . G 5 HOH A 63 1063 75 HOH HOH . G 5 HOH A 64 1064 50 HOH HOH . G 5 HOH A 65 1065 35 HOH HOH . G 5 HOH A 66 1066 36 HOH HOH . G 5 HOH A 67 1067 38 HOH HOH . G 5 HOH A 68 1068 59 HOH HOH . G 5 HOH A 69 1069 72 HOH HOH . G 5 HOH A 70 1070 37 HOH HOH . G 5 HOH A 71 1071 41 HOH HOH . G 5 HOH A 72 1072 66 HOH HOH . G 5 HOH A 73 1073 48 HOH HOH . G 5 HOH A 74 1074 28 HOH HOH . G 5 HOH A 75 1075 22 HOH HOH . G 5 HOH A 76 1076 42 HOH HOH . G 5 HOH A 77 1077 39 HOH HOH . G 5 HOH A 78 1078 47 HOH HOH . G 5 HOH A 79 1079 23 HOH HOH . G 5 HOH A 80 1080 40 HOH HOH . G 5 HOH A 81 1081 69 HOH HOH . G 5 HOH A 82 1082 29 HOH HOH . G 5 HOH A 83 1083 81 HOH HOH . G 5 HOH A 84 1084 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 P6G . . . B 2 39.934 236.08 184.721 1 110.28 ? O1 P6G 901 A 1 HETATM 2 C C2 P6G . . . B 2 39.475 234.843 185.305 1 121.38 ? C2 P6G 901 A 1 HETATM 3 C C3 P6G . . . B 2 39.908 233.755 184.348 1 123.03 ? C3 P6G 901 A 1 HETATM 4 O O4 P6G . . . B 2 38.931 232.73 184.111 1 124.82 ? O4 P6G 901 A 1 HETATM 5 C C5 P6G . . . B 2 38.379 232.738 182.786 1 111.4 ? C5 P6G 901 A 1 HETATM 6 C C6 P6G . . . B 2 39.439 232.288 181.787 1 112.84 ? C6 P6G 901 A 1 HETATM 7 O O7 P6G . . . B 2 39.653 233.169 180.668 1 100.1 ? O7 P6G 901 A 1 HETATM 8 C C8 P6G . . . B 2 39.983 234.546 180.886 1 86.25 ? C8 P6G 901 A 1 HETATM 9 C C9 P6G . . . B 2 41.393 234.805 180.431 1 84.51 ? C9 P6G 901 A 1 HETATM 10 O O10 P6G . . . B 2 42.001 235.675 181.367 1 90.94 ? O10 P6G 901 A 1 HETATM 11 C C11 P6G . . . B 2 43.401 235.479 181.541 1 91.2 ? C11 P6G 901 A 1 HETATM 12 C C12 P6G . . . B 2 43.961 235.85 182.913 1 78.76 ? C12 P6G 901 A 1 HETATM 13 O O13 P6G . . . B 2 43.256 235.112 183.908 1 86.18 ? O13 P6G 901 A 1 HETATM 14 C C14 P6G . . . B 2 44.071 234.313 184.739 1 79.23 ? C14 P6G 901 A 1 HETATM 15 C C15 P6G . . . B 2 43.233 233.65 185.83 1 79.23 ? C15 P6G 901 A 1 HETATM 16 O O16 P6G . . . B 2 43.07 232.258 185.534 1 80.65 ? O16 P6G 901 A 1 HETATM 17 C C17 P6G . . . B 2 41.954 231.599 186.138 1 68.93 ? C17 P6G 901 A 1 HETATM 18 C C18 P6G . . . B 2 42.033 230.118 185.805 1 72.3 ? C18 P6G 901 A 1 HETATM 19 O O19 P6G . . . B 2 40.85 229.652 185.177 1 74.71 ? O19 P6G 901 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 19 #