data_5IKS # _model_server_result.job_id SpOVbStiakA8fGHE_XLDCQ _model_server_result.datetime_utc '2024-11-16 13:54:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5iks # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5IKS # _exptl.entry_id 5IKS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 693.591 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "[3,3'-(7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-diyl-kappa~4~N~21~,N~22~,N~23~,N~24~)di(propanoato)(2-)](phenyl)iron" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.16 _cell.angle_gamma 90 _cell.entry_id 5IKS _cell.length_a 34.484 _cell.length_b 30.152 _cell.length_c 64.463 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IKS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 93 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 93 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id 6CO _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 6CO _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.34 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C40 H37 Fe N4 O4' _chem_comp.formula_weight 693.591 _chem_comp.id 6CO _chem_comp.mon_nstd_flag . _chem_comp.name "[3,3'-(7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-diyl-kappa~4~N~21~,N~22~,N~23~,N~24~)di(propanoato)(2-)](phenyl)iron" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1D CGD 6CO doub 1 n n O2D CGD 6CO sing 2 n n CGD CBD 6CO sing 3 n n C4 C3 6CO doub 4 n y C4 C5 6CO sing 5 n y C3 C2 6CO sing 6 n y CBD CAD 6CO sing 7 n n C5 C6 6CO doub 8 n y C2 C1 6CO doub 9 n y C6 C1 6CO sing 10 n y CAD C3D 6CO sing 11 n n CAA C2A 6CO sing 12 n n CAA CBA 6CO sing 13 n n C1 FE 6CO sing 14 n n C2A C3A 6CO doub 15 n n C2A C1A 6CO sing 16 n n C3D C2D 6CO doub 17 n n C3D C4D 6CO sing 18 n n CMD C2D 6CO sing 19 n n CMA C3A 6CO sing 20 n n CHA C4D 6CO doub 21 n n CHA C1A 6CO sing 22 n n C2D C1D 6CO sing 23 n n C3A C4A 6CO sing 24 n n C4D ND 6CO sing 25 n n C1A NA 6CO doub 26 n n CBA CGA 6CO sing 27 n n C1D ND 6CO sing 28 n n C1D CHD 6CO doub 29 n n C4A NA 6CO sing 30 n n C4A CHB 6CO doub 31 n n ND FE 6CO sing 32 n n NA FE 6CO sing 33 n n CHD C4C 6CO sing 34 n n CHB C1B 6CO sing 35 n n FE NC 6CO sing 36 n n FE NB 6CO sing 37 n n C4C NC 6CO doub 38 n n C4C C3C 6CO sing 39 n n O2A CGA 6CO doub 40 n n C1B NB 6CO sing 41 n y C1B C2B 6CO doub 42 n y CGA O1A 6CO sing 43 n n NC C1C 6CO sing 44 n n NB C4B 6CO sing 45 n y CAC C3C 6CO sing 46 n n CAC CBC 6CO doub 47 n n C3C C2C 6CO doub 48 n n C2B CMB 6CO sing 49 n n C2B C3B 6CO sing 50 n y C1C C2C 6CO sing 51 n n C1C CHC 6CO doub 52 n n C4B CHC 6CO sing 53 n n C4B C3B 6CO doub 54 n y C2C CMC 6CO sing 55 n n C3B CAB 6CO sing 56 n n CBB CAB 6CO doub 57 n n C4 H1 6CO sing 58 n n C5 H2 6CO sing 59 n n C6 H3 6CO sing 60 n n CAB H4 6CO sing 61 n n CAC H5 6CO sing 62 n n C2 H6 6CO sing 63 n n CAA H7 6CO sing 64 n n CAA H8 6CO sing 65 n n O2D H9 6CO sing 66 n n CBD H10 6CO sing 67 n n CBD H11 6CO sing 68 n n CAD H12 6CO sing 69 n n CAD H13 6CO sing 70 n n CMD H14 6CO sing 71 n n CMD H15 6CO sing 72 n n CMD H16 6CO sing 73 n n CHA H17 6CO sing 74 n n CHD H18 6CO sing 75 n n CBB H19 6CO sing 76 n n CBB H20 6CO sing 77 n n CMB H21 6CO sing 78 n n CMB H22 6CO sing 79 n n CMB H23 6CO sing 80 n n CHB H24 6CO sing 81 n n CBC H25 6CO sing 82 n n CBC H26 6CO sing 83 n n CMC H27 6CO sing 84 n n CMC H28 6CO sing 85 n n CMC H29 6CO sing 86 n n CHC H30 6CO sing 87 n n CMA H31 6CO sing 88 n n CMA H32 6CO sing 89 n n CMA H33 6CO sing 90 n n CBA H34 6CO sing 91 n n CBA H35 6CO sing 92 n n O1A H36 6CO sing 93 n n C3 H37 6CO sing 94 n n # _atom_sites.entry_id 5IKS _atom_sites.fract_transf_matrix[1][1] 0.028999 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007858 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.033165 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016072 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6CO A 1 201 1 6CO 1HE . C 3 SO4 A 1 202 1 SO4 SO4 . D 4 GOL A 1 203 1 GOL GOL . E 5 HOH A 1 301 41 HOH HOH . E 5 HOH A 2 302 48 HOH HOH . E 5 HOH A 3 303 11 HOH HOH . E 5 HOH A 4 304 4 HOH HOH . E 5 HOH A 5 305 58 HOH HOH . E 5 HOH A 6 306 16 HOH HOH . E 5 HOH A 7 307 59 HOH HOH . E 5 HOH A 8 308 65 HOH HOH . E 5 HOH A 9 309 3 HOH HOH . E 5 HOH A 10 310 10 HOH HOH . E 5 HOH A 11 311 64 HOH HOH . E 5 HOH A 12 312 45 HOH HOH . E 5 HOH A 13 313 1 HOH HOH . E 5 HOH A 14 314 17 HOH HOH . E 5 HOH A 15 315 23 HOH HOH . E 5 HOH A 16 316 24 HOH HOH . E 5 HOH A 17 317 5 HOH HOH . E 5 HOH A 18 318 27 HOH HOH . E 5 HOH A 19 319 12 HOH HOH . E 5 HOH A 20 320 7 HOH HOH . E 5 HOH A 21 321 49 HOH HOH . E 5 HOH A 22 322 21 HOH HOH . E 5 HOH A 23 323 32 HOH HOH . E 5 HOH A 24 324 26 HOH HOH . E 5 HOH A 25 325 14 HOH HOH . E 5 HOH A 26 326 18 HOH HOH . E 5 HOH A 27 327 13 HOH HOH . E 5 HOH A 28 328 6 HOH HOH . E 5 HOH A 29 329 15 HOH HOH . E 5 HOH A 30 330 25 HOH HOH . E 5 HOH A 31 331 38 HOH HOH . E 5 HOH A 32 332 55 HOH HOH . E 5 HOH A 33 333 43 HOH HOH . E 5 HOH A 34 334 36 HOH HOH . E 5 HOH A 35 335 46 HOH HOH . E 5 HOH A 36 336 60 HOH HOH . E 5 HOH A 37 337 28 HOH HOH . E 5 HOH A 38 338 8 HOH HOH . E 5 HOH A 39 339 42 HOH HOH . E 5 HOH A 40 340 30 HOH HOH . E 5 HOH A 41 341 19 HOH HOH . E 5 HOH A 42 342 37 HOH HOH . E 5 HOH A 43 343 63 HOH HOH . E 5 HOH A 44 344 29 HOH HOH . E 5 HOH A 45 345 53 HOH HOH . E 5 HOH A 46 346 20 HOH HOH . E 5 HOH A 47 347 31 HOH HOH . E 5 HOH A 48 348 9 HOH HOH . E 5 HOH A 49 349 51 HOH HOH . E 5 HOH A 50 350 54 HOH HOH . E 5 HOH A 51 351 56 HOH HOH . E 5 HOH A 52 352 33 HOH HOH . E 5 HOH A 53 353 61 HOH HOH . E 5 HOH A 54 354 44 HOH HOH . E 5 HOH A 55 355 57 HOH HOH . E 5 HOH A 56 356 52 HOH HOH . E 5 HOH A 57 357 66 HOH HOH . E 5 HOH A 58 358 40 HOH HOH . E 5 HOH A 59 359 35 HOH HOH . E 5 HOH A 60 360 50 HOH HOH . E 5 HOH A 61 361 62 HOH HOH . E 5 HOH A 62 362 2 HOH HOH . E 5 HOH A 63 363 34 HOH HOH . E 5 HOH A 64 364 22 HOH HOH . E 5 HOH A 65 365 39 HOH HOH . E 5 HOH A 66 366 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 6CO . . . B 2 -0.711 -1.278 -19.797 1 23.55 ? C4 6CO 201 A 1 HETATM 2 C C5 6CO . . . B 2 -0.622 -0.455 -18.682 1 23.4 ? C5 6CO 201 A 1 HETATM 3 C C6 6CO . . . B 2 -0.725 -0.973 -17.403 1 23.38 ? C6 6CO 201 A 1 HETATM 4 C CAB 6CO . . . B 2 -3.842 1.44 -13.399 1 23.43 ? CAB 6CO 201 A 1 HETATM 5 C CAC 6CO . . . B 2 3.704 0.001 -14.774 1 22.84 ? CAC 6CO 201 A 1 HETATM 6 C C2 6CO . . . B 2 -1.037 -3.162 -18.334 1 23.69 ? C2 6CO 201 A 1 HETATM 7 C CAA 6CO . . . B 2 -3.457 -7.793 -17.316 1 25.03 ? CAA 6CO 201 A 1 HETATM 8 O O2D 6CO . . . B 2 3.355 -8.299 -20.276 1 29.31 ? O2D 6CO 201 A 1 HETATM 9 C CGD 6CO . . . B 2 2.19 -8.102 -19.863 1 27.83 ? CGD 6CO 201 A 1 HETATM 10 O O1D 6CO . . . B 2 1.265 -8.805 -20.32 1 29.35 ? O1D 6CO 201 A 1 HETATM 11 C CBD 6CO . . . B 2 1.898 -6.999 -18.872 1 26.72 ? CBD 6CO 201 A 1 HETATM 12 C CAD 6CO . . . B 2 1.949 -7.43 -17.402 1 25.98 ? CAD 6CO 201 A 1 HETATM 13 C C3D 6CO . . . B 2 1.66 -6.096 -16.815 1 24.48 ? C3D 6CO 201 A 1 HETATM 14 C C2D 6CO . . . B 2 2.654 -5.053 -16.556 1 23.89 ? C2D 6CO 201 A 1 HETATM 15 C CMD 6CO . . . B 2 4.142 -5.106 -16.715 1 23.65 ? CMD 6CO 201 A 1 HETATM 16 C C4D 6CO . . . B 2 0.339 -5.517 -16.5 1 23.74 ? C4D 6CO 201 A 1 HETATM 17 C CHA 6CO . . . B 2 -0.882 -6.256 -16.677 1 23.92 ? CHA 6CO 201 A 1 HETATM 18 N ND 6CO . . . B 2 0.457 -4.277 -16.068 1 23.21 ? ND 6CO 201 A 1 HETATM 19 C C1D 6CO . . . B 2 1.855 -3.931 -16.086 1 23.5 ? C1D 6CO 201 A 1 HETATM 20 C CHD 6CO . . . B 2 2.416 -2.628 -15.719 1 23.44 ? CHD 6CO 201 A 1 HETATM 21 FE FE 6CO . . . B 2 -1.095 -3.011 -15.472 1 22.88 ? FE 6CO 201 A 1 HETATM 22 N NB 6CO . . . B 2 -2.659 -1.758 -14.915 1 22.83 ? NB 6CO 201 A 1 HETATM 23 C C4B 6CO . . . B 2 -2.497 -0.486 -14.247 1 22.98 ? C4B 6CO 201 A 1 HETATM 24 C C3B 6CO . . . B 2 -3.769 0.096 -13.951 1 22.89 ? C3B 6CO 201 A 1 HETATM 25 C CBB 6CO . . . B 2 -4.727 2.258 -13.814 1 23.74 ? CBB 6CO 201 A 1 HETATM 26 C C2B 6CO . . . B 2 -4.748 -0.848 -14.507 1 22.96 ? C2B 6CO 201 A 1 HETATM 27 C CMB 6CO . . . B 2 -6.234 -0.695 -14.489 1 23.05 ? CMB 6CO 201 A 1 HETATM 28 C C1B 6CO . . . B 2 -3.958 -1.961 -15.071 1 23 ? C1B 6CO 201 A 1 HETATM 29 C CHB 6CO . . . B 2 -4.603 -3.111 -15.666 1 23.05 ? CHB 6CO 201 A 1 HETATM 30 N NC 6CO . . . B 2 0.292 -1.524 -14.918 1 22.75 ? NC 6CO 201 A 1 HETATM 31 C C4C 6CO . . . B 2 1.612 -1.565 -15.153 1 22.97 ? C4C 6CO 201 A 1 HETATM 32 C C3C 6CO . . . B 2 2.28 -0.344 -14.675 1 22.75 ? C3C 6CO 201 A 1 HETATM 33 C CBC 6CO . . . B 2 4.126 1.23 -14.61 1 22.62 ? CBC 6CO 201 A 1 HETATM 34 C C2C 6CO . . . B 2 1.205 0.485 -14.176 1 22.62 ? C2C 6CO 201 A 1 HETATM 35 C CMC 6CO . . . B 2 1.265 1.848 -13.562 1 22.89 ? CMC 6CO 201 A 1 HETATM 36 C C1C 6CO . . . B 2 0.021 -0.34 -14.369 1 22.63 ? C1C 6CO 201 A 1 HETATM 37 C CHC 6CO . . . B 2 -1.254 0.222 -13.979 1 22.79 ? CHC 6CO 201 A 1 HETATM 38 N NA 6CO . . . B 2 -2.509 -4.428 -16.06 1 23.51 ? NA 6CO 201 A 1 HETATM 39 C C1A 6CO . . . B 2 -2.172 -5.635 -16.49 1 23.85 ? C1A 6CO 201 A 1 HETATM 40 C C4A 6CO . . . B 2 -3.833 -4.271 -16.078 1 23.49 ? C4A 6CO 201 A 1 HETATM 41 C C3A 6CO . . . B 2 -4.495 -5.498 -16.539 1 24 ? C3A 6CO 201 A 1 HETATM 42 C CMA 6CO . . . B 2 -5.969 -5.757 -16.699 1 24.56 ? CMA 6CO 201 A 1 HETATM 43 C C2A 6CO . . . B 2 -3.375 -6.387 -16.835 1 24.43 ? C2A 6CO 201 A 1 HETATM 44 C CBA 6CO . . . B 2 -4.02 -8.579 -16.139 1 25.4 ? CBA 6CO 201 A 1 HETATM 45 C CGA 6CO . . . B 2 -3.07 -8.717 -14.961 1 25.9 ? CGA 6CO 201 A 1 HETATM 46 O O1A 6CO . . . B 2 -3.464 -8.457 -13.799 1 25.55 ? O1A 6CO 201 A 1 HETATM 47 O O2A 6CO . . . B 2 -1.893 -9.113 -15.13 1 25.96 ? O2A 6CO 201 A 1 HETATM 48 C C1 6CO . . . B 2 -0.946 -2.347 -17.194 1 23.4 ? C1 6CO 201 A 1 HETATM 49 C C3 6CO . . . B 2 -0.927 -2.637 -19.611 1 23.36 ? C3 6CO 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 49 #