data_5IKS # _model_server_result.job_id flzRK-aaNJrttttCcUkq9g _model_server_result.datetime_utc '2024-11-16 13:25:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5iks # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5IKS # _exptl.entry_id 5IKS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.16 _cell.angle_gamma 90 _cell.entry_id 5IKS _cell.length_a 34.484 _cell.length_b 30.152 _cell.length_c 64.463 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IKS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 93 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 93 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id 6CO _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 6CO _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.34 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 210 n n C1 C2 GOL sing 211 n n C1 H11 GOL sing 212 n n C1 H12 GOL sing 213 n n O1 HO1 GOL sing 214 n n C2 O2 GOL sing 215 n n C2 C3 GOL sing 216 n n C2 H2 GOL sing 217 n n O2 HO2 GOL sing 218 n n C3 O3 GOL sing 219 n n C3 H31 GOL sing 220 n n C3 H32 GOL sing 221 n n O3 HO3 GOL sing 222 n n # _atom_sites.entry_id 5IKS _atom_sites.fract_transf_matrix[1][1] 0.028999 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007858 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.033165 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016072 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6CO A 1 201 1 6CO 1HE . C 3 SO4 A 1 202 1 SO4 SO4 . D 4 GOL A 1 203 1 GOL GOL . E 5 HOH A 1 301 41 HOH HOH . E 5 HOH A 2 302 48 HOH HOH . E 5 HOH A 3 303 11 HOH HOH . E 5 HOH A 4 304 4 HOH HOH . E 5 HOH A 5 305 58 HOH HOH . E 5 HOH A 6 306 16 HOH HOH . E 5 HOH A 7 307 59 HOH HOH . E 5 HOH A 8 308 65 HOH HOH . E 5 HOH A 9 309 3 HOH HOH . E 5 HOH A 10 310 10 HOH HOH . E 5 HOH A 11 311 64 HOH HOH . E 5 HOH A 12 312 45 HOH HOH . E 5 HOH A 13 313 1 HOH HOH . E 5 HOH A 14 314 17 HOH HOH . E 5 HOH A 15 315 23 HOH HOH . E 5 HOH A 16 316 24 HOH HOH . E 5 HOH A 17 317 5 HOH HOH . E 5 HOH A 18 318 27 HOH HOH . E 5 HOH A 19 319 12 HOH HOH . E 5 HOH A 20 320 7 HOH HOH . E 5 HOH A 21 321 49 HOH HOH . E 5 HOH A 22 322 21 HOH HOH . E 5 HOH A 23 323 32 HOH HOH . E 5 HOH A 24 324 26 HOH HOH . E 5 HOH A 25 325 14 HOH HOH . E 5 HOH A 26 326 18 HOH HOH . E 5 HOH A 27 327 13 HOH HOH . E 5 HOH A 28 328 6 HOH HOH . E 5 HOH A 29 329 15 HOH HOH . E 5 HOH A 30 330 25 HOH HOH . E 5 HOH A 31 331 38 HOH HOH . E 5 HOH A 32 332 55 HOH HOH . E 5 HOH A 33 333 43 HOH HOH . E 5 HOH A 34 334 36 HOH HOH . E 5 HOH A 35 335 46 HOH HOH . E 5 HOH A 36 336 60 HOH HOH . E 5 HOH A 37 337 28 HOH HOH . E 5 HOH A 38 338 8 HOH HOH . E 5 HOH A 39 339 42 HOH HOH . E 5 HOH A 40 340 30 HOH HOH . E 5 HOH A 41 341 19 HOH HOH . E 5 HOH A 42 342 37 HOH HOH . E 5 HOH A 43 343 63 HOH HOH . E 5 HOH A 44 344 29 HOH HOH . E 5 HOH A 45 345 53 HOH HOH . E 5 HOH A 46 346 20 HOH HOH . E 5 HOH A 47 347 31 HOH HOH . E 5 HOH A 48 348 9 HOH HOH . E 5 HOH A 49 349 51 HOH HOH . E 5 HOH A 50 350 54 HOH HOH . E 5 HOH A 51 351 56 HOH HOH . E 5 HOH A 52 352 33 HOH HOH . E 5 HOH A 53 353 61 HOH HOH . E 5 HOH A 54 354 44 HOH HOH . E 5 HOH A 55 355 57 HOH HOH . E 5 HOH A 56 356 52 HOH HOH . E 5 HOH A 57 357 66 HOH HOH . E 5 HOH A 58 358 40 HOH HOH . E 5 HOH A 59 359 35 HOH HOH . E 5 HOH A 60 360 50 HOH HOH . E 5 HOH A 61 361 62 HOH HOH . E 5 HOH A 62 362 2 HOH HOH . E 5 HOH A 63 363 34 HOH HOH . E 5 HOH A 64 364 22 HOH HOH . E 5 HOH A 65 365 39 HOH HOH . E 5 HOH A 66 366 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -21.404 18.508 -5.513 1 41.58 ? C1 GOL 203 A 1 HETATM 2 O O1 GOL . . . D 4 -21.511 19.758 -6.193 1 40.95 ? O1 GOL 203 A 1 HETATM 3 C C2 GOL . . . D 4 -22.355 17.471 -6.116 1 41.13 ? C2 GOL 203 A 1 HETATM 4 O O2 GOL . . . D 4 -23.31 18.024 -7.036 1 41.19 ? O2 GOL 203 A 1 HETATM 5 C C3 GOL . . . D 4 -23.136 16.783 -5.014 1 41.14 ? C3 GOL 203 A 1 HETATM 6 O O3 GOL . . . D 4 -23.631 15.548 -5.537 1 40.12 ? O3 GOL 203 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #