data_5ILD # _model_server_result.job_id pfDIK7FM1NKQLW-Rp6MGvA _model_server_result.datetime_utc '2024-11-15 15:32:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ild # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 5ILD # _exptl.entry_id 5ILD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.237 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ILD _cell.length_a 126.91 _cell.length_b 126.91 _cell.length_c 123.19 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ILD _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 303 A ASP 301 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc2 A OD2 ASP 446 A ASP 444 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc3 A OG1 THR 450 A THR 448 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc4 A OE2 GLU 454 A GLU 452 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc5 C MG MG . A MG 602 1_555 E O HOH . A HOH 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? # _chem_comp.formula 'C6 H13 N O4 S' _chem_comp.formula_weight 195.237 _chem_comp.id MES _chem_comp.mon_nstd_flag . _chem_comp.name '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 MES sing 218 n n O1 C6 MES sing 219 n n C2 C3 MES sing 220 n n C2 H21 MES sing 221 n n C2 H22 MES sing 222 n n C3 N4 MES sing 223 n n C3 H31 MES sing 224 n n C3 H32 MES sing 225 n n N4 C5 MES sing 226 n n N4 C7 MES sing 227 n n N4 HN4 MES sing 228 n n C5 C6 MES sing 229 n n C5 H51 MES sing 230 n n C5 H52 MES sing 231 n n C6 H61 MES sing 232 n n C6 H62 MES sing 233 n n C7 C8 MES sing 234 n n C7 H71 MES sing 235 n n C7 H72 MES sing 236 n n C8 S MES sing 237 n n C8 H81 MES sing 238 n n C8 H82 MES sing 239 n n S O1S MES doub 240 n n S O2S MES doub 241 n n S O3S MES sing 242 n n # _atom_sites.entry_id 5ILD _atom_sites.fract_transf_matrix[1][1] 0.00788 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00788 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008118 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 601 1 MG MG . C 2 MG A 1 602 2 MG MG . D 3 MES A 1 603 600 MES MES . E 4 HOH A 1 701 194 HOH HOH . E 4 HOH A 2 702 159 HOH HOH . E 4 HOH A 3 703 176 HOH HOH . E 4 HOH A 4 704 165 HOH HOH . E 4 HOH A 5 705 183 HOH HOH . E 4 HOH A 6 706 57 HOH HOH . E 4 HOH A 7 707 157 HOH HOH . E 4 HOH A 8 708 71 HOH HOH . E 4 HOH A 9 709 169 HOH HOH . E 4 HOH A 10 710 132 HOH HOH . E 4 HOH A 11 711 125 HOH HOH . E 4 HOH A 12 712 173 HOH HOH . E 4 HOH A 13 713 177 HOH HOH . E 4 HOH A 14 714 29 HOH HOH . E 4 HOH A 15 715 163 HOH HOH . E 4 HOH A 16 716 76 HOH HOH . E 4 HOH A 17 717 116 HOH HOH . E 4 HOH A 18 718 135 HOH HOH . E 4 HOH A 19 719 99 HOH HOH . E 4 HOH A 20 720 121 HOH HOH . E 4 HOH A 21 721 86 HOH HOH . E 4 HOH A 22 722 161 HOH HOH . E 4 HOH A 23 723 8 HOH HOH . E 4 HOH A 24 724 155 HOH HOH . E 4 HOH A 25 725 35 HOH HOH . E 4 HOH A 26 726 126 HOH HOH . E 4 HOH A 27 727 9 HOH HOH . E 4 HOH A 28 728 1 HOH HOH . E 4 HOH A 29 729 39 HOH HOH . E 4 HOH A 30 730 178 HOH HOH . E 4 HOH A 31 731 26 HOH HOH . E 4 HOH A 32 732 118 HOH HOH . E 4 HOH A 33 733 92 HOH HOH . E 4 HOH A 34 734 103 HOH HOH . E 4 HOH A 35 735 32 HOH HOH . E 4 HOH A 36 736 36 HOH HOH . E 4 HOH A 37 737 19 HOH HOH . E 4 HOH A 38 738 78 HOH HOH . E 4 HOH A 39 739 175 HOH HOH . E 4 HOH A 40 740 3 HOH HOH . E 4 HOH A 41 741 70 HOH HOH . E 4 HOH A 42 742 84 HOH HOH . E 4 HOH A 43 743 187 HOH HOH . E 4 HOH A 44 744 82 HOH HOH . E 4 HOH A 45 745 136 HOH HOH . E 4 HOH A 46 746 44 HOH HOH . E 4 HOH A 47 747 105 HOH HOH . E 4 HOH A 48 748 137 HOH HOH . E 4 HOH A 49 749 98 HOH HOH . E 4 HOH A 50 750 17 HOH HOH . E 4 HOH A 51 751 12 HOH HOH . E 4 HOH A 52 752 23 HOH HOH . E 4 HOH A 53 753 63 HOH HOH . E 4 HOH A 54 754 106 HOH HOH . E 4 HOH A 55 755 47 HOH HOH . E 4 HOH A 56 756 38 HOH HOH . E 4 HOH A 57 757 54 HOH HOH . E 4 HOH A 58 758 27 HOH HOH . E 4 HOH A 59 759 66 HOH HOH . E 4 HOH A 60 760 145 HOH HOH . E 4 HOH A 61 761 25 HOH HOH . E 4 HOH A 62 762 143 HOH HOH . E 4 HOH A 63 763 18 HOH HOH . E 4 HOH A 64 764 69 HOH HOH . E 4 HOH A 65 765 7 HOH HOH . E 4 HOH A 66 766 24 HOH HOH . E 4 HOH A 67 767 43 HOH HOH . E 4 HOH A 68 768 65 HOH HOH . E 4 HOH A 69 769 189 HOH HOH . E 4 HOH A 70 770 120 HOH HOH . E 4 HOH A 71 771 30 HOH HOH . E 4 HOH A 72 772 101 HOH HOH . E 4 HOH A 73 773 102 HOH HOH . E 4 HOH A 74 774 4 HOH HOH . E 4 HOH A 75 775 77 HOH HOH . E 4 HOH A 76 776 41 HOH HOH . E 4 HOH A 77 777 139 HOH HOH . E 4 HOH A 78 778 140 HOH HOH . E 4 HOH A 79 779 11 HOH HOH . E 4 HOH A 80 780 184 HOH HOH . E 4 HOH A 81 781 2 HOH HOH . E 4 HOH A 82 782 64 HOH HOH . E 4 HOH A 83 783 95 HOH HOH . E 4 HOH A 84 784 14 HOH HOH . E 4 HOH A 85 785 34 HOH HOH . E 4 HOH A 86 786 33 HOH HOH . E 4 HOH A 87 787 48 HOH HOH . E 4 HOH A 88 788 133 HOH HOH . E 4 HOH A 89 789 119 HOH HOH . E 4 HOH A 90 790 45 HOH HOH . E 4 HOH A 91 791 79 HOH HOH . E 4 HOH A 92 792 138 HOH HOH . E 4 HOH A 93 793 123 HOH HOH . E 4 HOH A 94 794 51 HOH HOH . E 4 HOH A 95 795 28 HOH HOH . E 4 HOH A 96 796 108 HOH HOH . E 4 HOH A 97 797 5 HOH HOH . E 4 HOH A 98 798 37 HOH HOH . E 4 HOH A 99 799 22 HOH HOH . E 4 HOH A 100 800 179 HOH HOH . E 4 HOH A 101 801 55 HOH HOH . E 4 HOH A 102 802 59 HOH HOH . E 4 HOH A 103 803 6 HOH HOH . E 4 HOH A 104 804 21 HOH HOH . E 4 HOH A 105 805 113 HOH HOH . E 4 HOH A 106 806 20 HOH HOH . E 4 HOH A 107 807 172 HOH HOH . E 4 HOH A 108 808 124 HOH HOH . E 4 HOH A 109 809 107 HOH HOH . E 4 HOH A 110 810 110 HOH HOH . E 4 HOH A 111 811 49 HOH HOH . E 4 HOH A 112 812 61 HOH HOH . E 4 HOH A 113 813 151 HOH HOH . E 4 HOH A 114 814 168 HOH HOH . E 4 HOH A 115 815 81 HOH HOH . E 4 HOH A 116 816 114 HOH HOH . E 4 HOH A 117 817 75 HOH HOH . E 4 HOH A 118 818 149 HOH HOH . E 4 HOH A 119 819 16 HOH HOH . E 4 HOH A 120 820 31 HOH HOH . E 4 HOH A 121 821 181 HOH HOH . E 4 HOH A 122 822 60 HOH HOH . E 4 HOH A 123 823 160 HOH HOH . E 4 HOH A 124 824 53 HOH HOH . E 4 HOH A 125 825 52 HOH HOH . E 4 HOH A 126 826 117 HOH HOH . E 4 HOH A 127 827 73 HOH HOH . E 4 HOH A 128 828 42 HOH HOH . E 4 HOH A 129 829 112 HOH HOH . E 4 HOH A 130 830 74 HOH HOH . E 4 HOH A 131 831 130 HOH HOH . E 4 HOH A 132 832 131 HOH HOH . E 4 HOH A 133 833 170 HOH HOH . E 4 HOH A 134 834 10 HOH HOH . E 4 HOH A 135 835 72 HOH HOH . E 4 HOH A 136 836 85 HOH HOH . E 4 HOH A 137 837 46 HOH HOH . E 4 HOH A 138 838 68 HOH HOH . E 4 HOH A 139 839 147 HOH HOH . E 4 HOH A 140 840 128 HOH HOH . E 4 HOH A 141 841 154 HOH HOH . E 4 HOH A 142 842 80 HOH HOH . E 4 HOH A 143 843 122 HOH HOH . E 4 HOH A 144 844 40 HOH HOH . E 4 HOH A 145 845 13 HOH HOH . E 4 HOH A 146 846 62 HOH HOH . E 4 HOH A 147 847 56 HOH HOH . E 4 HOH A 148 848 89 HOH HOH . E 4 HOH A 149 849 88 HOH HOH . E 4 HOH A 150 850 15 HOH HOH . E 4 HOH A 151 851 191 HOH HOH . E 4 HOH A 152 852 167 HOH HOH . E 4 HOH A 153 853 166 HOH HOH . E 4 HOH A 154 854 171 HOH HOH . E 4 HOH A 155 855 96 HOH HOH . E 4 HOH A 156 856 141 HOH HOH . E 4 HOH A 157 857 129 HOH HOH . E 4 HOH A 158 858 162 HOH HOH . E 4 HOH A 159 859 83 HOH HOH . E 4 HOH A 160 860 67 HOH HOH . E 4 HOH A 161 861 58 HOH HOH . E 4 HOH A 162 862 144 HOH HOH . E 4 HOH A 163 863 111 HOH HOH . E 4 HOH A 164 864 174 HOH HOH . E 4 HOH A 165 865 148 HOH HOH . E 4 HOH A 166 866 93 HOH HOH . E 4 HOH A 167 867 100 HOH HOH . E 4 HOH A 168 868 153 HOH HOH . E 4 HOH A 169 869 195 HOH HOH . E 4 HOH A 170 870 164 HOH HOH . E 4 HOH A 171 871 87 HOH HOH . E 4 HOH A 172 872 94 HOH HOH . E 4 HOH A 173 873 150 HOH HOH . E 4 HOH A 174 874 146 HOH HOH . E 4 HOH A 175 875 182 HOH HOH . E 4 HOH A 176 876 180 HOH HOH . E 4 HOH A 177 877 158 HOH HOH . E 4 HOH A 178 878 190 HOH HOH . E 4 HOH A 179 879 142 HOH HOH . E 4 HOH A 180 880 91 HOH HOH . E 4 HOH A 181 881 193 HOH HOH . E 4 HOH A 182 882 192 HOH HOH . E 4 HOH A 183 883 186 HOH HOH . E 4 HOH A 184 884 50 HOH HOH . E 4 HOH A 185 885 188 HOH HOH . E 4 HOH A 186 886 127 HOH HOH . E 4 HOH A 187 887 90 HOH HOH . E 4 HOH A 188 888 97 HOH HOH . E 4 HOH A 189 889 109 HOH HOH . E 4 HOH A 190 890 156 HOH HOH . E 4 HOH A 191 891 152 HOH HOH . E 4 HOH A 192 892 115 HOH HOH . E 4 HOH A 193 893 185 HOH HOH . E 4 HOH A 194 894 104 HOH HOH . E 4 HOH A 195 895 196 HOH HOH . E 4 HOH A 196 896 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MES . A . D 3 22.001 77.163 16.53 0.49 123.47 ? O1 MES 603 A 1 HETATM 2 O O1 MES . B . D 3 21.99 77.22 16.083 0.51 123.56 ? O1 MES 603 A 1 HETATM 3 C C2 MES . A . D 3 21.372 76.973 15.263 0.49 123.84 ? C2 MES 603 A 1 HETATM 4 C C2 MES . B . D 3 22.583 78.444 16.509 0.51 123.15 ? C2 MES 603 A 1 HETATM 5 C C3 MES . A . D 3 22.135 77.681 14.142 0.49 124.01 ? C3 MES 603 A 1 HETATM 6 C C3 MES . B . D 3 22.09 79.617 15.667 0.51 123.5 ? C3 MES 603 A 1 HETATM 7 N N4 MES . A . D 3 22.381 79.053 14.571 0.49 123.78 ? N4 MES 603 A 1 HETATM 8 N N4 MES . B . D 3 22.254 79.265 14.264 0.51 123.95 ? N4 MES 603 A 1 HETATM 9 C C5 MES . A . D 3 22.973 79.276 15.882 0.49 123.23 ? C5 MES 603 A 1 HETATM 10 C C5 MES . B . D 3 21.725 77.99 13.799 0.51 123.84 ? C5 MES 603 A 1 HETATM 11 C C6 MES . A . D 3 22.107 78.535 16.887 0.49 123.19 ? C6 MES 603 A 1 HETATM 12 C C6 MES . B . D 3 22.294 76.921 14.723 0.51 123.89 ? C6 MES 603 A 1 HETATM 13 C C7 MES . A . D 3 22.672 80.076 13.573 0.49 124.24 ? C7 MES 603 A 1 HETATM 14 C C7 MES . B . D 3 22.277 80.367 13.31 0.51 124.37 ? C7 MES 603 A 1 HETATM 15 C C8 MES . A . D 3 22.149 79.624 12.215 0.49 124.6 ? C8 MES 603 A 1 HETATM 16 C C8 MES . B . D 3 23.368 79.996 12.311 0.51 124.56 ? C8 MES 603 A 1 HETATM 17 S S MES . A . D 3 22.587 80.762 11.08 0.49 168.85 ? S MES 603 A 1 HETATM 18 S S MES . B . D 3 22.844 80.284 10.758 0.51 168.83 ? S MES 603 A 1 HETATM 19 O O1S MES . A . D 3 21.397 81.527 10.646 0.49 169.04 ? O1S MES 603 A 1 HETATM 20 O O1S MES . B . D 3 23.832 81.119 10.037 0.51 168.41 ? O1S MES 603 A 1 HETATM 21 O O2S MES . A . D 3 23.192 80.101 9.902 0.49 168.64 ? O2S MES 603 A 1 HETATM 22 O O2S MES . B . D 3 21.542 80.986 10.783 0.51 169.09 ? O2S MES 603 A 1 HETATM 23 O O3S MES . A . D 3 23.57 81.692 11.678 0.49 168.58 ? O3S MES 603 A 1 HETATM 24 O O3S MES . B . D 3 22.717 78.985 10.061 0.51 168.63 ? O3S MES 603 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #