data_5ILM # _model_server_result.job_id HWiNMe2NpyuC_nn7LkeWGQ _model_server_result.datetime_utc '2025-08-03 22:28:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ilm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":208}' # _entry.id 5ILM # _exptl.entry_id 5ILM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ILM _cell.length_a 90.599 _cell.length_b 90.599 _cell.length_c 45.121 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ILM _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 I N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 94 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 93 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id 4HE _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 4HE _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.193 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 210 n n C1 C2 GOL sing 211 n n C1 H11 GOL sing 212 n n C1 H12 GOL sing 213 n n O1 HO1 GOL sing 214 n n C2 O2 GOL sing 215 n n C2 C3 GOL sing 216 n n C2 H2 GOL sing 217 n n O2 HO2 GOL sing 218 n n C3 O3 GOL sing 219 n n C3 H31 GOL sing 220 n n C3 H32 GOL sing 221 n n O3 HO3 GOL sing 222 n n # _atom_sites.entry_id 5ILM _atom_sites.fract_transf_matrix[1][1] 0.011038 _atom_sites.fract_transf_matrix[1][2] 0.006373 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012745 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022163 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4HE A 1 201 1 4HE 4HE . C 3 SO4 A 1 202 1 SO4 SO4 . D 3 SO4 A 1 203 2 SO4 SO4 . E 3 SO4 A 1 204 3 SO4 SO4 . F 3 SO4 A 1 205 4 SO4 SO4 . G 3 SO4 A 1 206 5 SO4 SO4 . H 4 GOL A 1 207 1 GOL GOL . I 4 GOL A 1 208 2 GOL GOL . J 5 HOH A 1 301 125 HOH HOH . J 5 HOH A 2 302 122 HOH HOH . J 5 HOH A 3 303 81 HOH HOH . J 5 HOH A 4 304 183 HOH HOH . J 5 HOH A 5 305 84 HOH HOH . J 5 HOH A 6 306 126 HOH HOH . J 5 HOH A 7 307 69 HOH HOH . J 5 HOH A 8 308 173 HOH HOH . J 5 HOH A 9 309 71 HOH HOH . J 5 HOH A 10 310 112 HOH HOH . J 5 HOH A 11 311 127 HOH HOH . J 5 HOH A 12 312 224 HOH HOH . J 5 HOH A 13 313 107 HOH HOH . J 5 HOH A 14 314 115 HOH HOH . J 5 HOH A 15 315 208 HOH HOH . J 5 HOH A 16 316 19 HOH HOH . J 5 HOH A 17 317 214 HOH HOH . J 5 HOH A 18 318 140 HOH HOH . J 5 HOH A 19 319 21 HOH HOH . J 5 HOH A 20 320 117 HOH HOH . J 5 HOH A 21 321 220 HOH HOH . J 5 HOH A 22 322 29 HOH HOH . J 5 HOH A 23 323 142 HOH HOH . J 5 HOH A 24 324 105 HOH HOH . J 5 HOH A 25 325 180 HOH HOH . J 5 HOH A 26 326 76 HOH HOH . J 5 HOH A 27 327 83 HOH HOH . J 5 HOH A 28 328 159 HOH HOH . J 5 HOH A 29 329 213 HOH HOH . J 5 HOH A 30 330 70 HOH HOH . J 5 HOH A 31 331 148 HOH HOH . J 5 HOH A 32 332 131 HOH HOH . J 5 HOH A 33 333 73 HOH HOH . J 5 HOH A 34 334 60 HOH HOH . J 5 HOH A 35 335 164 HOH HOH . J 5 HOH A 36 336 204 HOH HOH . J 5 HOH A 37 337 23 HOH HOH . J 5 HOH A 38 338 65 HOH HOH . J 5 HOH A 39 339 190 HOH HOH . J 5 HOH A 40 340 95 HOH HOH . J 5 HOH A 41 341 46 HOH HOH . J 5 HOH A 42 342 53 HOH HOH . J 5 HOH A 43 343 51 HOH HOH . J 5 HOH A 44 344 212 HOH HOH . J 5 HOH A 45 345 92 HOH HOH . J 5 HOH A 46 346 41 HOH HOH . J 5 HOH A 47 347 210 HOH HOH . J 5 HOH A 48 348 10 HOH HOH . J 5 HOH A 49 349 43 HOH HOH . J 5 HOH A 50 350 90 HOH HOH . J 5 HOH A 51 351 197 HOH HOH . J 5 HOH A 52 352 201 HOH HOH . J 5 HOH A 53 353 87 HOH HOH . J 5 HOH A 54 354 22 HOH HOH . J 5 HOH A 55 355 211 HOH HOH . J 5 HOH A 56 356 15 HOH HOH . J 5 HOH A 57 357 47 HOH HOH . J 5 HOH A 58 358 30 HOH HOH . J 5 HOH A 59 359 14 HOH HOH . J 5 HOH A 60 360 35 HOH HOH . J 5 HOH A 61 361 7 HOH HOH . J 5 HOH A 62 362 48 HOH HOH . J 5 HOH A 63 363 26 HOH HOH . J 5 HOH A 64 364 135 HOH HOH . J 5 HOH A 65 365 176 HOH HOH . J 5 HOH A 66 366 103 HOH HOH . J 5 HOH A 67 367 39 HOH HOH . J 5 HOH A 68 368 12 HOH HOH . J 5 HOH A 69 369 57 HOH HOH . J 5 HOH A 70 370 85 HOH HOH . J 5 HOH A 71 371 55 HOH HOH . J 5 HOH A 72 372 58 HOH HOH . J 5 HOH A 73 373 36 HOH HOH . J 5 HOH A 74 374 4 HOH HOH . J 5 HOH A 75 375 33 HOH HOH . J 5 HOH A 76 376 59 HOH HOH . J 5 HOH A 77 377 56 HOH HOH . J 5 HOH A 78 378 25 HOH HOH . J 5 HOH A 79 379 18 HOH HOH . J 5 HOH A 80 380 89 HOH HOH . J 5 HOH A 81 381 40 HOH HOH . J 5 HOH A 82 382 178 HOH HOH . J 5 HOH A 83 383 207 HOH HOH . J 5 HOH A 84 384 5 HOH HOH . J 5 HOH A 85 385 2 HOH HOH . J 5 HOH A 86 386 1 HOH HOH . J 5 HOH A 87 387 42 HOH HOH . J 5 HOH A 88 388 9 HOH HOH . J 5 HOH A 89 389 184 HOH HOH . J 5 HOH A 90 390 80 HOH HOH . J 5 HOH A 91 391 86 HOH HOH . J 5 HOH A 92 392 31 HOH HOH . J 5 HOH A 93 393 153 HOH HOH . J 5 HOH A 94 394 179 HOH HOH . J 5 HOH A 95 395 146 HOH HOH . J 5 HOH A 96 396 11 HOH HOH . J 5 HOH A 97 397 20 HOH HOH . J 5 HOH A 98 398 94 HOH HOH . J 5 HOH A 99 399 66 HOH HOH . J 5 HOH A 100 400 17 HOH HOH . J 5 HOH A 101 401 203 HOH HOH . J 5 HOH A 102 402 50 HOH HOH . J 5 HOH A 103 403 154 HOH HOH . J 5 HOH A 104 404 61 HOH HOH . J 5 HOH A 105 405 222 HOH HOH . J 5 HOH A 106 406 195 HOH HOH . J 5 HOH A 107 407 152 HOH HOH . J 5 HOH A 108 408 75 HOH HOH . J 5 HOH A 109 409 114 HOH HOH . J 5 HOH A 110 410 120 HOH HOH . J 5 HOH A 111 411 52 HOH HOH . J 5 HOH A 112 412 225 HOH HOH . J 5 HOH A 113 413 129 HOH HOH . J 5 HOH A 114 414 124 HOH HOH . J 5 HOH A 115 415 223 HOH HOH . J 5 HOH A 116 416 118 HOH HOH . J 5 HOH A 117 417 3 HOH HOH . J 5 HOH A 118 418 149 HOH HOH . J 5 HOH A 119 419 63 HOH HOH . J 5 HOH A 120 420 16 HOH HOH . J 5 HOH A 121 421 8 HOH HOH . J 5 HOH A 122 422 162 HOH HOH . J 5 HOH A 123 423 77 HOH HOH . J 5 HOH A 124 424 45 HOH HOH . J 5 HOH A 125 425 13 HOH HOH . J 5 HOH A 126 426 54 HOH HOH . J 5 HOH A 127 427 68 HOH HOH . J 5 HOH A 128 428 6 HOH HOH . J 5 HOH A 129 429 32 HOH HOH . J 5 HOH A 130 430 49 HOH HOH . J 5 HOH A 131 431 160 HOH HOH . J 5 HOH A 132 432 24 HOH HOH . J 5 HOH A 133 433 216 HOH HOH . J 5 HOH A 134 434 27 HOH HOH . J 5 HOH A 135 435 82 HOH HOH . J 5 HOH A 136 436 34 HOH HOH . J 5 HOH A 137 437 96 HOH HOH . J 5 HOH A 138 438 192 HOH HOH . J 5 HOH A 139 439 44 HOH HOH . J 5 HOH A 140 440 128 HOH HOH . J 5 HOH A 141 441 182 HOH HOH . J 5 HOH A 142 442 196 HOH HOH . J 5 HOH A 143 443 168 HOH HOH . J 5 HOH A 144 444 123 HOH HOH . J 5 HOH A 145 445 163 HOH HOH . J 5 HOH A 146 446 169 HOH HOH . J 5 HOH A 147 447 171 HOH HOH . J 5 HOH A 148 448 172 HOH HOH . J 5 HOH A 149 449 79 HOH HOH . J 5 HOH A 150 450 215 HOH HOH . J 5 HOH A 151 451 121 HOH HOH . J 5 HOH A 152 452 37 HOH HOH . J 5 HOH A 153 453 67 HOH HOH . J 5 HOH A 154 454 144 HOH HOH . J 5 HOH A 155 455 188 HOH HOH . J 5 HOH A 156 456 206 HOH HOH . J 5 HOH A 157 457 218 HOH HOH . J 5 HOH A 158 458 166 HOH HOH . J 5 HOH A 159 459 137 HOH HOH . J 5 HOH A 160 460 91 HOH HOH . J 5 HOH A 161 461 109 HOH HOH . J 5 HOH A 162 462 158 HOH HOH . J 5 HOH A 163 463 134 HOH HOH . J 5 HOH A 164 464 202 HOH HOH . J 5 HOH A 165 465 139 HOH HOH . J 5 HOH A 166 466 72 HOH HOH . J 5 HOH A 167 467 78 HOH HOH . J 5 HOH A 168 468 136 HOH HOH . J 5 HOH A 169 469 74 HOH HOH . J 5 HOH A 170 470 187 HOH HOH . J 5 HOH A 171 471 221 HOH HOH . J 5 HOH A 172 472 98 HOH HOH . J 5 HOH A 173 473 101 HOH HOH . J 5 HOH A 174 474 119 HOH HOH . J 5 HOH A 175 475 108 HOH HOH . J 5 HOH A 176 476 205 HOH HOH . J 5 HOH A 177 477 174 HOH HOH . J 5 HOH A 178 478 132 HOH HOH . J 5 HOH A 179 479 38 HOH HOH . J 5 HOH A 180 480 138 HOH HOH . J 5 HOH A 181 481 64 HOH HOH . J 5 HOH A 182 482 113 HOH HOH . J 5 HOH A 183 483 62 HOH HOH . J 5 HOH A 184 484 194 HOH HOH . J 5 HOH A 185 485 151 HOH HOH . J 5 HOH A 186 486 88 HOH HOH . J 5 HOH A 187 487 145 HOH HOH . J 5 HOH A 188 488 141 HOH HOH . J 5 HOH A 189 489 209 HOH HOH . J 5 HOH A 190 490 185 HOH HOH . J 5 HOH A 191 491 143 HOH HOH . J 5 HOH A 192 492 193 HOH HOH . J 5 HOH A 193 493 219 HOH HOH . J 5 HOH A 194 494 167 HOH HOH . J 5 HOH A 195 495 100 HOH HOH . J 5 HOH A 196 496 111 HOH HOH . J 5 HOH A 197 497 116 HOH HOH . J 5 HOH A 198 498 161 HOH HOH . J 5 HOH A 199 499 175 HOH HOH . J 5 HOH A 200 500 177 HOH HOH . J 5 HOH A 201 501 155 HOH HOH . J 5 HOH A 202 502 181 HOH HOH . J 5 HOH A 203 503 186 HOH HOH . J 5 HOH A 204 504 198 HOH HOH . J 5 HOH A 205 505 99 HOH HOH . J 5 HOH A 206 506 106 HOH HOH . J 5 HOH A 207 507 191 HOH HOH . J 5 HOH A 208 508 97 HOH HOH . J 5 HOH A 209 509 110 HOH HOH . J 5 HOH A 210 510 130 HOH HOH . J 5 HOH A 211 511 200 HOH HOH . J 5 HOH A 212 512 170 HOH HOH . J 5 HOH A 213 513 157 HOH HOH . J 5 HOH A 214 514 199 HOH HOH . J 5 HOH A 215 515 28 HOH HOH . J 5 HOH A 216 516 102 HOH HOH . J 5 HOH A 217 517 104 HOH HOH . J 5 HOH A 218 518 150 HOH HOH . J 5 HOH A 219 519 147 HOH HOH . J 5 HOH A 220 520 189 HOH HOH . J 5 HOH A 221 521 133 HOH HOH . J 5 HOH A 222 522 217 HOH HOH . J 5 HOH A 223 523 93 HOH HOH . J 5 HOH A 224 524 156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 4 -59.241 37.469 26.183 1 58.75 ? C1 GOL 208 A 1 HETATM 2 O O1 GOL . . . I 4 -59.222 38.753 25.395 1 33.54 ? O1 GOL 208 A 1 HETATM 3 C C2 GOL . . . I 4 -60.309 36.375 25.895 1 48.63 ? C2 GOL 208 A 1 HETATM 4 O O2 GOL . . . I 4 -60.487 36.063 24.569 1 30.55 ? O2 GOL 208 A 1 HETATM 5 C C3 GOL . . . I 4 -60.096 34.998 26.401 1 38.16 ? C3 GOL 208 A 1 HETATM 6 O O3 GOL . . . I 4 -58.854 34.231 26.148 1 24.56 ? O3 GOL 208 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #