data_5ILO # _model_server_result.job_id J732fTuaH793blotClkfiQ _model_server_result.datetime_utc '2024-12-31 15:17:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ilo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 5ILO # _exptl.entry_id 5ILO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.26 _cell.angle_gamma 90 _cell.entry_id 5ILO _cell.length_a 70.159 _cell.length_b 62.646 _cell.length_c 114.113 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ILO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 5ILO _atom_sites.fract_transf_matrix[1][1] 0.014253 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001563 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015963 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008816 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 301 1 NAD NAD . D 2 NAD B 1 301 2 NAD NAD . E 3 HOH A 1 401 74 HOH HOH . E 3 HOH A 2 402 59 HOH HOH . E 3 HOH A 3 403 25 HOH HOH . E 3 HOH A 4 404 94 HOH HOH . E 3 HOH A 5 405 98 HOH HOH . E 3 HOH A 6 406 20 HOH HOH . E 3 HOH A 7 407 44 HOH HOH . E 3 HOH A 8 408 33 HOH HOH . E 3 HOH A 9 409 29 HOH HOH . E 3 HOH A 10 410 76 HOH HOH . E 3 HOH A 11 411 19 HOH HOH . E 3 HOH A 12 412 43 HOH HOH . E 3 HOH A 13 413 129 HOH HOH . E 3 HOH A 14 414 42 HOH HOH . E 3 HOH A 15 415 3 HOH HOH . E 3 HOH A 16 416 106 HOH HOH . E 3 HOH A 17 417 14 HOH HOH . E 3 HOH A 18 418 26 HOH HOH . E 3 HOH A 19 419 89 HOH HOH . E 3 HOH A 20 420 63 HOH HOH . E 3 HOH A 21 421 107 HOH HOH . E 3 HOH A 22 422 11 HOH HOH . E 3 HOH A 23 423 30 HOH HOH . E 3 HOH A 24 424 122 HOH HOH . E 3 HOH A 25 425 21 HOH HOH . E 3 HOH A 26 426 52 HOH HOH . E 3 HOH A 27 427 53 HOH HOH . E 3 HOH A 28 428 16 HOH HOH . E 3 HOH A 29 429 78 HOH HOH . E 3 HOH A 30 430 100 HOH HOH . E 3 HOH A 31 431 41 HOH HOH . E 3 HOH A 32 432 87 HOH HOH . E 3 HOH A 33 433 93 HOH HOH . E 3 HOH A 34 434 82 HOH HOH . E 3 HOH A 35 435 58 HOH HOH . E 3 HOH A 36 436 102 HOH HOH . E 3 HOH A 37 437 46 HOH HOH . E 3 HOH A 38 438 70 HOH HOH . E 3 HOH A 39 439 66 HOH HOH . E 3 HOH A 40 440 17 HOH HOH . E 3 HOH A 41 441 24 HOH HOH . E 3 HOH A 42 442 80 HOH HOH . E 3 HOH A 43 443 4 HOH HOH . E 3 HOH A 44 444 101 HOH HOH . E 3 HOH A 45 445 54 HOH HOH . E 3 HOH A 46 446 69 HOH HOH . E 3 HOH A 47 447 72 HOH HOH . E 3 HOH A 48 448 119 HOH HOH . E 3 HOH A 49 449 13 HOH HOH . E 3 HOH A 50 450 18 HOH HOH . E 3 HOH A 51 451 62 HOH HOH . E 3 HOH A 52 452 35 HOH HOH . E 3 HOH A 53 453 103 HOH HOH . E 3 HOH A 54 454 120 HOH HOH . E 3 HOH A 55 455 40 HOH HOH . E 3 HOH A 56 456 6 HOH HOH . E 3 HOH A 57 457 67 HOH HOH . E 3 HOH A 58 458 112 HOH HOH . E 3 HOH A 59 459 88 HOH HOH . E 3 HOH A 60 460 105 HOH HOH . F 3 HOH B 1 401 127 HOH HOH . F 3 HOH B 2 402 1 HOH HOH . F 3 HOH B 3 403 38 HOH HOH . F 3 HOH B 4 404 99 HOH HOH . F 3 HOH B 5 405 56 HOH HOH . F 3 HOH B 6 406 36 HOH HOH . F 3 HOH B 7 407 32 HOH HOH . F 3 HOH B 8 408 91 HOH HOH . F 3 HOH B 9 409 10 HOH HOH . F 3 HOH B 10 410 109 HOH HOH . F 3 HOH B 11 411 9 HOH HOH . F 3 HOH B 12 412 37 HOH HOH . F 3 HOH B 13 413 71 HOH HOH . F 3 HOH B 14 414 114 HOH HOH . F 3 HOH B 15 415 86 HOH HOH . F 3 HOH B 16 416 92 HOH HOH . F 3 HOH B 17 417 85 HOH HOH . F 3 HOH B 18 418 34 HOH HOH . F 3 HOH B 19 419 28 HOH HOH . F 3 HOH B 20 420 73 HOH HOH . F 3 HOH B 21 421 47 HOH HOH . F 3 HOH B 22 422 125 HOH HOH . F 3 HOH B 23 423 51 HOH HOH . F 3 HOH B 24 424 5 HOH HOH . F 3 HOH B 25 425 8 HOH HOH . F 3 HOH B 26 426 50 HOH HOH . F 3 HOH B 27 427 108 HOH HOH . F 3 HOH B 28 428 48 HOH HOH . F 3 HOH B 29 429 12 HOH HOH . F 3 HOH B 30 430 23 HOH HOH . F 3 HOH B 31 431 22 HOH HOH . F 3 HOH B 32 432 115 HOH HOH . F 3 HOH B 33 433 60 HOH HOH . F 3 HOH B 34 434 2 HOH HOH . F 3 HOH B 35 435 79 HOH HOH . F 3 HOH B 36 436 61 HOH HOH . F 3 HOH B 37 437 49 HOH HOH . F 3 HOH B 38 438 7 HOH HOH . F 3 HOH B 39 439 65 HOH HOH . F 3 HOH B 40 440 110 HOH HOH . F 3 HOH B 41 441 83 HOH HOH . F 3 HOH B 42 442 124 HOH HOH . F 3 HOH B 43 443 75 HOH HOH . F 3 HOH B 44 444 128 HOH HOH . F 3 HOH B 45 445 39 HOH HOH . F 3 HOH B 46 446 90 HOH HOH . F 3 HOH B 47 447 15 HOH HOH . F 3 HOH B 48 448 45 HOH HOH . F 3 HOH B 49 449 57 HOH HOH . F 3 HOH B 50 450 81 HOH HOH . F 3 HOH B 51 451 31 HOH HOH . F 3 HOH B 52 452 77 HOH HOH . F 3 HOH B 53 453 126 HOH HOH . F 3 HOH B 54 454 68 HOH HOH . F 3 HOH B 55 455 121 HOH HOH . F 3 HOH B 56 456 95 HOH HOH . F 3 HOH B 57 457 104 HOH HOH . F 3 HOH B 58 458 123 HOH HOH . F 3 HOH B 59 459 96 HOH HOH . F 3 HOH B 60 460 55 HOH HOH . F 3 HOH B 61 461 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . D 2 13.595 22.994 46.841 1 28.9 ? PA NAD 301 B 1 HETATM 2 O O1A NAD . . . D 2 14.569 23.847 46.086 1 27.93 ? O1A NAD 301 B 1 HETATM 3 O O2A NAD . . . D 2 13.571 23.397 48.286 1 33.23 -1 O2A NAD 301 B 1 HETATM 4 O O5B NAD . . . D 2 14.022 21.427 46.739 1 24.99 ? O5B NAD 301 B 1 HETATM 5 C C5B NAD . . . D 2 15.157 21.086 45.916 1 28.65 ? C5B NAD 301 B 1 HETATM 6 C C4B NAD . . . D 2 15.957 19.894 46.583 1 26.65 ? C4B NAD 301 B 1 HETATM 7 O O4B NAD . . . D 2 16.456 19.114 45.655 1 26.66 ? O4B NAD 301 B 1 HETATM 8 C C3B NAD . . . D 2 17.12 20.453 47.354 1 26.53 ? C3B NAD 301 B 1 HETATM 9 O O3B NAD . . . D 2 17.272 19.793 48.531 1 27.23 ? O3B NAD 301 B 1 HETATM 10 C C2B NAD . . . D 2 18.343 20.205 46.411 1 29.73 ? C2B NAD 301 B 1 HETATM 11 O O2B NAD . . . D 2 19.623 20.067 47.214 1 34.05 ? O2B NAD 301 B 1 HETATM 12 C C1B NAD . . . D 2 18.064 19.117 45.828 1 29.2 ? C1B NAD 301 B 1 HETATM 13 N N9A NAD . . . D 2 18.707 19.07 44.525 1 29.86 ? N9A NAD 301 B 1 HETATM 14 C C8A NAD . . . D 2 18.715 19.996 43.534 1 27.45 ? C8A NAD 301 B 1 HETATM 15 N N7A NAD . . . D 2 19.454 19.505 42.511 1 27.31 ? N7A NAD 301 B 1 HETATM 16 C C5A NAD . . . D 2 19.903 18.279 42.865 1 30.12 ? C5A NAD 301 B 1 HETATM 17 C C6A NAD . . . D 2 20.684 17.357 42.201 1 28.84 ? C6A NAD 301 B 1 HETATM 18 N N6A NAD . . . D 2 21.239 17.481 40.91 1 27.12 ? N6A NAD 301 B 1 HETATM 19 N N1A NAD . . . D 2 20.992 16.183 42.794 1 30.27 ? N1A NAD 301 B 1 HETATM 20 C C2A NAD . . . D 2 20.533 15.91 44.041 1 31.94 ? C2A NAD 301 B 1 HETATM 21 N N3A NAD . . . D 2 19.754 16.825 44.705 1 31.8 ? N3A NAD 301 B 1 HETATM 22 C C4A NAD . . . D 2 19.443 18.005 44.112 1 31.47 ? C4A NAD 301 B 1 HETATM 23 O O3 NAD . . . D 2 12.141 23.192 46.214 1 30.13 ? O3 NAD 301 B 1 HETATM 24 P PN NAD . . . D 2 11.012 22.06 46.169 1 31.59 ? PN NAD 301 B 1 HETATM 25 O O1N NAD . . . D 2 9.655 22.684 46.492 1 31.68 ? O1N NAD 301 B 1 HETATM 26 O O2N NAD . . . D 2 11.319 20.964 47.179 1 27.91 -1 O2N NAD 301 B 1 HETATM 27 O O5D NAD . . . D 2 10.961 21.418 44.691 1 31.03 ? O5D NAD 301 B 1 HETATM 28 C C5D NAD . . . D 2 10.733 20.049 44.592 1 28.93 ? C5D NAD 301 B 1 HETATM 29 C C4D NAD . . . D 2 10.031 19.74 43.264 1 32.33 ? C4D NAD 301 B 1 HETATM 30 O O4D NAD . . . D 2 8.768 20.111 43.317 1 34.53 ? O4D NAD 301 B 1 HETATM 31 C C3D NAD . . . D 2 10.656 20.556 42.176 1 28.73 ? C3D NAD 301 B 1 HETATM 32 O O3D NAD . . . D 2 11.516 19.776 41.476 1 26.59 ? O3D NAD 301 B 1 HETATM 33 C C2D NAD . . . D 2 9.471 20.995 41.255 1 32.27 ? C2D NAD 301 B 1 HETATM 34 O O2D NAD . . . D 2 9.54 20.202 40.024 1 35.03 ? O2D NAD 301 B 1 HETATM 35 C C1D NAD . . . D 2 8.384 20.742 41.885 1 31.98 ? C1D NAD 301 B 1 HETATM 36 N N1N NAD . . . D 2 7.619 21.949 42.102 1 32.04 ? N1N NAD 301 B 1 HETATM 37 C C2N NAD . . . D 2 7.045 22.613 41.048 1 34.17 ? C2N NAD 301 B 1 HETATM 38 C C3N NAD . . . D 2 6.309 23.77 41.275 1 33.56 ? C3N NAD 301 B 1 HETATM 39 C C7N NAD . . . D 2 5.66 24.537 40.078 1 31.51 ? C7N NAD 301 B 1 HETATM 40 O O7N NAD . . . D 2 5.997 24.275 38.938 1 32.96 ? O7N NAD 301 B 1 HETATM 41 N N7N NAD . . . D 2 4.658 25.582 40.311 1 38.37 ? N7N NAD 301 B 1 HETATM 42 C C4N NAD . . . D 2 6.156 24.248 42.554 1 33.87 ? C4N NAD 301 B 1 HETATM 43 C C5N NAD . . . D 2 6.728 23.583 43.607 1 34.87 ? C5N NAD 301 B 1 HETATM 44 C C6N NAD . . . D 2 7.462 22.428 43.383 1 33.4 ? C6N NAD 301 B 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #