data_5ILR # _model_server_result.job_id -CIR9OumyTQGJkta2o6mjA _model_server_result.datetime_utc '2024-11-17 11:30:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ilr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 5ILR # _exptl.entry_id 5ILR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 728.036 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(4-chlorophenyl)[3,3'-(7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-diyl-kappa~4~N~21~,N~22~,N~23~,N~24~)di(propanoato)(2-)]iron" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.21 _cell.angle_gamma 90 _cell.entry_id 5ILR _cell.length_a 34.361 _cell.length_b 30.315 _cell.length_c 64.368 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ILR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 94 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 93 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id 4HE _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 4HE _struct_conn.ptnr2_auth_seq_id 204 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.291 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C40 H36 Cl Fe N4 O4' _chem_comp.formula_weight 728.036 _chem_comp.id 4HE _chem_comp.mon_nstd_flag . _chem_comp.name "(4-chlorophenyl)[3,3'-(7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-diyl-kappa~4~N~21~,N~22~,N~23~,N~24~)di(propanoato)(2-)]iron" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C4 4HE sing 1 n n O2D CGD 4HE doub 2 n n C4 C3 4HE doub 3 n y C4 C5 4HE sing 4 n y CGD O1D 4HE sing 5 n n CGD CBD 4HE sing 6 n n C3 C2 4HE sing 7 n y CBD CAD 4HE sing 8 n n C5 C6 4HE doub 9 n y C2 C1 4HE doub 10 n y C6 C1 4HE sing 11 n y CAD C3D 4HE sing 12 n n C1 FE 4HE sing 13 n n CAA C2A 4HE sing 14 n n CAA CBA 4HE sing 15 n n CMA C3A 4HE sing 16 n n C2A C3A 4HE doub 17 n n C2A C1A 4HE sing 18 n n C3D C2D 4HE doub 19 n n C3D C4D 4HE sing 20 n n CMD C2D 4HE sing 21 n n C3A C4A 4HE sing 22 n n CHA C4D 4HE doub 23 n n CHA C1A 4HE sing 24 n n C2D C1D 4HE sing 25 n n C4D ND 4HE sing 26 n n C1A NA 4HE doub 27 n n C4A NA 4HE sing 28 n n C4A CHB 4HE doub 29 n n NA FE 4HE sing 30 n n CBA CGA 4HE sing 31 n n C1D ND 4HE sing 32 n n C1D CHD 4HE doub 33 n n ND FE 4HE sing 34 n n CHB C1B 4HE sing 35 n n CHD C4C 4HE sing 36 n n FE NB 4HE sing 37 n n FE NC 4HE sing 38 n n C1B NB 4HE sing 39 n y C1B C2B 4HE doub 40 n y C4C NC 4HE doub 41 n n C4C C3C 4HE sing 42 n n NB C4B 4HE sing 43 n y O2A CGA 4HE doub 44 n n NC C1C 4HE sing 45 n n CGA O1A 4HE sing 46 n n CMB C2B 4HE sing 47 n n CAC CBC 4HE doub 48 n n CAC C3C 4HE sing 49 n n C2B C3B 4HE sing 50 n y C3C C2C 4HE doub 51 n n C1C C2C 4HE sing 52 n n C1C CHC 4HE doub 53 n n C4B C3B 4HE doub 54 n y C4B CHC 4HE sing 55 n n C2C CMC 4HE sing 56 n n C3B CAB 4HE sing 57 n n CBB CAB 4HE doub 58 n n O1D H1 4HE sing 59 n n CBD H2 4HE sing 60 n n CBD H3 4HE sing 61 n n CAD H4 4HE sing 62 n n CAD H5 4HE sing 63 n n CMD H6 4HE sing 64 n n CMD H7 4HE sing 65 n n CMD H8 4HE sing 66 n n CHA H9 4HE sing 67 n n CHD H10 4HE sing 68 n n CAB H11 4HE sing 69 n n CBB H12 4HE sing 70 n n CBB H13 4HE sing 71 n n CMB H14 4HE sing 72 n n CMB H15 4HE sing 73 n n CMB H16 4HE sing 74 n n CHB H17 4HE sing 75 n n CAC H18 4HE sing 76 n n CBC H19 4HE sing 77 n n CBC H20 4HE sing 78 n n CMC H21 4HE sing 79 n n CMC H22 4HE sing 80 n n CMC H23 4HE sing 81 n n CHC H24 4HE sing 82 n n CMA H25 4HE sing 83 n n CMA H26 4HE sing 84 n n CMA H27 4HE sing 85 n n CAA H28 4HE sing 86 n n CAA H29 4HE sing 87 n n CBA H30 4HE sing 88 n n CBA H31 4HE sing 89 n n O1A H32 4HE sing 90 n n C2 H33 4HE sing 91 n n C3 H34 4HE sing 92 n n C5 H35 4HE sing 93 n n C6 H36 4HE sing 94 n n # _atom_sites.entry_id 5ILR _atom_sites.fract_transf_matrix[1][1] 0.029103 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007911 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.032987 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016099 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 1 SO4 SO4 . C 2 SO4 A 1 202 2 SO4 SO4 . D 2 SO4 A 1 203 3 SO4 SO4 . E 3 4HE A 1 204 1 4HE 4HE . F 4 GOL A 1 205 1 GOL GOL . G 5 HOH A 1 301 82 HOH HOH . G 5 HOH A 2 302 33 HOH HOH . G 5 HOH A 3 303 31 HOH HOH . G 5 HOH A 4 304 35 HOH HOH . G 5 HOH A 5 305 69 HOH HOH . G 5 HOH A 6 306 65 HOH HOH . G 5 HOH A 7 307 66 HOH HOH . G 5 HOH A 8 308 103 HOH HOH . G 5 HOH A 9 309 68 HOH HOH . G 5 HOH A 10 310 70 HOH HOH . G 5 HOH A 11 311 20 HOH HOH . G 5 HOH A 12 312 39 HOH HOH . G 5 HOH A 13 313 8 HOH HOH . G 5 HOH A 14 314 15 HOH HOH . G 5 HOH A 15 315 36 HOH HOH . G 5 HOH A 16 316 49 HOH HOH . G 5 HOH A 17 317 17 HOH HOH . G 5 HOH A 18 318 95 HOH HOH . G 5 HOH A 19 319 18 HOH HOH . G 5 HOH A 20 320 26 HOH HOH . G 5 HOH A 21 321 10 HOH HOH . G 5 HOH A 22 322 22 HOH HOH . G 5 HOH A 23 323 104 HOH HOH . G 5 HOH A 24 324 34 HOH HOH . G 5 HOH A 25 325 94 HOH HOH . G 5 HOH A 26 326 5 HOH HOH . G 5 HOH A 27 327 81 HOH HOH . G 5 HOH A 28 328 16 HOH HOH . G 5 HOH A 29 329 80 HOH HOH . G 5 HOH A 30 330 51 HOH HOH . G 5 HOH A 31 331 73 HOH HOH . G 5 HOH A 32 332 24 HOH HOH . G 5 HOH A 33 333 57 HOH HOH . G 5 HOH A 34 334 76 HOH HOH . G 5 HOH A 35 335 83 HOH HOH . G 5 HOH A 36 336 86 HOH HOH . G 5 HOH A 37 337 99 HOH HOH . G 5 HOH A 38 338 19 HOH HOH . G 5 HOH A 39 339 37 HOH HOH . G 5 HOH A 40 340 25 HOH HOH . G 5 HOH A 41 341 2 HOH HOH . G 5 HOH A 42 342 30 HOH HOH . G 5 HOH A 43 343 48 HOH HOH . G 5 HOH A 44 344 40 HOH HOH . G 5 HOH A 45 345 74 HOH HOH . G 5 HOH A 46 346 45 HOH HOH . G 5 HOH A 47 347 3 HOH HOH . G 5 HOH A 48 348 7 HOH HOH . G 5 HOH A 49 349 4 HOH HOH . G 5 HOH A 50 350 11 HOH HOH . G 5 HOH A 51 351 6 HOH HOH . G 5 HOH A 52 352 38 HOH HOH . G 5 HOH A 53 353 50 HOH HOH . G 5 HOH A 54 354 12 HOH HOH . G 5 HOH A 55 355 71 HOH HOH . G 5 HOH A 56 356 54 HOH HOH . G 5 HOH A 57 357 91 HOH HOH . G 5 HOH A 58 358 52 HOH HOH . G 5 HOH A 59 359 1 HOH HOH . G 5 HOH A 60 360 101 HOH HOH . G 5 HOH A 61 361 85 HOH HOH . G 5 HOH A 62 362 28 HOH HOH . G 5 HOH A 63 363 55 HOH HOH . G 5 HOH A 64 364 102 HOH HOH . G 5 HOH A 65 365 14 HOH HOH . G 5 HOH A 66 366 56 HOH HOH . G 5 HOH A 67 367 77 HOH HOH . G 5 HOH A 68 368 32 HOH HOH . G 5 HOH A 69 369 67 HOH HOH . G 5 HOH A 70 370 79 HOH HOH . G 5 HOH A 71 371 96 HOH HOH . G 5 HOH A 72 372 72 HOH HOH . G 5 HOH A 73 373 78 HOH HOH . G 5 HOH A 74 374 43 HOH HOH . G 5 HOH A 75 375 60 HOH HOH . G 5 HOH A 76 376 59 HOH HOH . G 5 HOH A 77 377 92 HOH HOH . G 5 HOH A 78 378 29 HOH HOH . G 5 HOH A 79 379 13 HOH HOH . G 5 HOH A 80 380 63 HOH HOH . G 5 HOH A 81 381 21 HOH HOH . G 5 HOH A 82 382 88 HOH HOH . G 5 HOH A 83 383 75 HOH HOH . G 5 HOH A 84 384 9 HOH HOH . G 5 HOH A 85 385 58 HOH HOH . G 5 HOH A 86 386 42 HOH HOH . G 5 HOH A 87 387 100 HOH HOH . G 5 HOH A 88 388 87 HOH HOH . G 5 HOH A 89 389 84 HOH HOH . G 5 HOH A 90 390 64 HOH HOH . G 5 HOH A 91 391 53 HOH HOH . G 5 HOH A 92 392 44 HOH HOH . G 5 HOH A 93 393 90 HOH HOH . G 5 HOH A 94 394 23 HOH HOH . G 5 HOH A 95 395 61 HOH HOH . G 5 HOH A 96 396 62 HOH HOH . G 5 HOH A 97 397 89 HOH HOH . G 5 HOH A 98 398 93 HOH HOH . G 5 HOH A 99 399 46 HOH HOH . G 5 HOH A 100 400 98 HOH HOH . G 5 HOH A 101 401 27 HOH HOH . G 5 HOH A 102 402 41 HOH HOH . G 5 HOH A 103 403 97 HOH HOH . G 5 HOH A 104 404 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2D 4HE . . . E 3 3.52 -7.741 -20.53 1 29.2 ? O2D 4HE 204 A 1 HETATM 2 C CGD 4HE . . . E 3 2.579 -7.782 -19.681 1 30.26 ? CGD 4HE 204 A 1 HETATM 3 O O1D 4HE . . . E 3 2.04 -8.892 -19.475 1 31.05 ? O1D 4HE 204 A 1 HETATM 4 C CBD 4HE . . . E 3 2.15 -6.577 -18.833 1 26.22 ? CBD 4HE 204 A 1 HETATM 5 C CAD 4HE . . . E 3 2.112 -6.938 -17.321 1 24.13 ? CAD 4HE 204 A 1 HETATM 6 C C3D 4HE . . . E 3 1.733 -5.632 -16.747 1 20.57 ? C3D 4HE 204 A 1 HETATM 7 C C2D 4HE . . . E 3 2.711 -4.579 -16.487 1 20.11 ? C2D 4HE 204 A 1 HETATM 8 C CMD 4HE . . . E 3 4.195 -4.538 -16.605 1 20.33 ? CMD 4HE 204 A 1 HETATM 9 C C4D 4HE . . . E 3 0.412 -5.086 -16.416 1 17.25 ? C4D 4HE 204 A 1 HETATM 10 C CHA 4HE . . . E 3 -0.787 -5.847 -16.567 1 18.98 ? CHA 4HE 204 A 1 HETATM 11 N ND 4HE . . . E 3 0.543 -3.837 -15.933 1 18.03 ? ND 4HE 204 A 1 HETATM 12 C C1D 4HE . . . E 3 1.928 -3.482 -15.951 1 18.6 ? C1D 4HE 204 A 1 HETATM 13 C CHD 4HE . . . E 3 2.524 -2.205 -15.526 1 17.22 ? CHD 4HE 204 A 1 HETATM 14 FE FE 4HE . . . E 3 -0.949 -2.504 -15.433 1 21.11 ? FE 4HE 204 A 1 HETATM 15 N NB 4HE . . . E 3 -2.485 -1.185 -14.976 1 19.53 ? NB 4HE 204 A 1 HETATM 16 C C4B 4HE . . . E 3 -2.331 0.1 -14.377 1 21.3 ? C4B 4HE 204 A 1 HETATM 17 C C3B 4HE . . . E 3 -3.658 0.715 -14.186 1 21.19 ? C3B 4HE 204 A 1 HETATM 18 C CAB 4HE . . . E 3 -3.766 2.066 -13.665 1 24.37 ? CAB 4HE 204 A 1 HETATM 19 C CBB 4HE . . . E 3 -4.791 2.842 -13.955 1 26.99 ? CBB 4HE 204 A 1 HETATM 20 C C2B 4HE . . . E 3 -4.623 -0.27 -14.713 1 20.87 ? C2B 4HE 204 A 1 HETATM 21 C CMB 4HE . . . E 3 -6.127 -0.177 -14.8 1 23.87 ? CMB 4HE 204 A 1 HETATM 22 C C1B 4HE . . . E 3 -3.785 -1.387 -15.197 1 20.07 ? C1B 4HE 204 A 1 HETATM 23 C CHB 4HE . . . E 3 -4.405 -2.538 -15.775 1 20.21 ? CHB 4HE 204 A 1 HETATM 24 N NC 4HE . . . E 3 0.468 -1.009 -14.864 1 18.48 ? NC 4HE 204 A 1 HETATM 25 C C4C 4HE . . . E 3 1.786 -1.094 -15.032 1 17.86 ? C4C 4HE 204 A 1 HETATM 26 C C3C 4HE . . . E 3 2.479 0.162 -14.661 1 18.35 ? C3C 4HE 204 A 1 HETATM 27 C CAC 4HE . . . E 3 3.928 0.443 -14.784 1 20.46 ? CAC 4HE 204 A 1 HETATM 28 C CBC 4HE . . . E 3 4.386 1.716 -14.726 1 20.06 ? CBC 4HE 204 A 1 HETATM 29 C C2C 4HE . . . E 3 1.395 1.064 -14.242 1 19.7 ? C2C 4HE 204 A 1 HETATM 30 C CMC 4HE . . . E 3 1.394 2.487 -13.733 1 22.83 ? CMC 4HE 204 A 1 HETATM 31 C C1C 4HE . . . E 3 0.217 0.209 -14.404 1 19.96 ? C1C 4HE 204 A 1 HETATM 32 C CHC 4HE . . . E 3 -1.077 0.78 -14.098 1 19.86 ? CHC 4HE 204 A 1 HETATM 33 N NA 4HE . . . E 3 -2.371 -3.935 -16.023 1 21.92 ? NA 4HE 204 A 1 HETATM 34 C C1A 4HE . . . E 3 -2.092 -5.182 -16.409 1 20.65 ? C1A 4HE 204 A 1 HETATM 35 C C4A 4HE . . . E 3 -3.702 -3.736 -16.106 1 23.31 ? C4A 4HE 204 A 1 HETATM 36 C C3A 4HE . . . E 3 -4.446 -4.905 -16.586 1 22.21 ? C3A 4HE 204 A 1 HETATM 37 C CMA 4HE . . . E 3 -5.918 -5.131 -16.825 1 26.41 ? CMA 4HE 204 A 1 HETATM 38 C C2A 4HE . . . E 3 -3.333 -5.852 -16.778 1 22.33 ? C2A 4HE 204 A 1 HETATM 39 C CAA 4HE . . . E 3 -3.41 -7.269 -17.21 1 24.28 ? CAA 4HE 204 A 1 HETATM 40 C CBA 4HE . . . E 3 -3.98 -8.061 -16.009 1 26.05 ? CBA 4HE 204 A 1 HETATM 41 C CGA 4HE . . . E 3 -3.023 -8.17 -14.812 1 25.77 ? CGA 4HE 204 A 1 HETATM 42 O O1A 4HE . . . E 3 -3.478 -7.85 -13.677 1 25.66 ? O1A 4HE 204 A 1 HETATM 43 O O2A 4HE . . . E 3 -1.79 -8.535 -14.936 1 24.9 ? O2A 4HE 204 A 1 HETATM 44 C C1 4HE . . . E 3 -0.737 -1.806 -17.303 1 20.05 ? C1 4HE 204 A 1 HETATM 45 C C2 4HE . . . E 3 -0.629 -2.729 -18.353 1 21.51 ? C2 4HE 204 A 1 HETATM 46 C C3 4HE . . . E 3 -0.476 -2.284 -19.622 1 22.7 ? C3 4HE 204 A 1 HETATM 47 C C4 4HE . . . E 3 -0.346 -0.909 -19.852 1 23.5 ? C4 4HE 204 A 1 HETATM 48 C C5 4HE . . . E 3 -0.373 0.032 -18.824 1 24.08 ? C5 4HE 204 A 1 HETATM 49 C C6 4HE . . . E 3 -0.575 -0.417 -17.536 1 21.83 ? C6 4HE 204 A 1 HETATM 50 CL CL1 4HE . . . E 3 -0.153 -0.294 -21.533 1 26.76 ? CL1 4HE 204 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 50 #