data_5ILR # _model_server_result.job_id vomaZBrTxVVGG3jOkEo6kQ _model_server_result.datetime_utc '2025-08-04 23:00:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ilr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 5ILR # _exptl.entry_id 5ILR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.21 _cell.angle_gamma 90 _cell.entry_id 5ILR _cell.length_a 34.361 _cell.length_b 30.315 _cell.length_c 64.368 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ILR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 94 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 93 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id 4HE _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 4HE _struct_conn.ptnr2_auth_seq_id 204 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.291 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 210 n n C1 C2 GOL sing 211 n n C1 H11 GOL sing 212 n n C1 H12 GOL sing 213 n n O1 HO1 GOL sing 214 n n C2 O2 GOL sing 215 n n C2 C3 GOL sing 216 n n C2 H2 GOL sing 217 n n O2 HO2 GOL sing 218 n n C3 O3 GOL sing 219 n n C3 H31 GOL sing 220 n n C3 H32 GOL sing 221 n n O3 HO3 GOL sing 222 n n # _atom_sites.entry_id 5ILR _atom_sites.fract_transf_matrix[1][1] 0.029103 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007911 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.032987 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016099 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 1 SO4 SO4 . C 2 SO4 A 1 202 2 SO4 SO4 . D 2 SO4 A 1 203 3 SO4 SO4 . E 3 4HE A 1 204 1 4HE 4HE . F 4 GOL A 1 205 1 GOL GOL . G 5 HOH A 1 301 82 HOH HOH . G 5 HOH A 2 302 33 HOH HOH . G 5 HOH A 3 303 31 HOH HOH . G 5 HOH A 4 304 35 HOH HOH . G 5 HOH A 5 305 69 HOH HOH . G 5 HOH A 6 306 65 HOH HOH . G 5 HOH A 7 307 66 HOH HOH . G 5 HOH A 8 308 103 HOH HOH . G 5 HOH A 9 309 68 HOH HOH . G 5 HOH A 10 310 70 HOH HOH . G 5 HOH A 11 311 20 HOH HOH . G 5 HOH A 12 312 39 HOH HOH . G 5 HOH A 13 313 8 HOH HOH . G 5 HOH A 14 314 15 HOH HOH . G 5 HOH A 15 315 36 HOH HOH . G 5 HOH A 16 316 49 HOH HOH . G 5 HOH A 17 317 17 HOH HOH . G 5 HOH A 18 318 95 HOH HOH . G 5 HOH A 19 319 18 HOH HOH . G 5 HOH A 20 320 26 HOH HOH . G 5 HOH A 21 321 10 HOH HOH . G 5 HOH A 22 322 22 HOH HOH . G 5 HOH A 23 323 104 HOH HOH . G 5 HOH A 24 324 34 HOH HOH . G 5 HOH A 25 325 94 HOH HOH . G 5 HOH A 26 326 5 HOH HOH . G 5 HOH A 27 327 81 HOH HOH . G 5 HOH A 28 328 16 HOH HOH . G 5 HOH A 29 329 80 HOH HOH . G 5 HOH A 30 330 51 HOH HOH . G 5 HOH A 31 331 73 HOH HOH . G 5 HOH A 32 332 24 HOH HOH . G 5 HOH A 33 333 57 HOH HOH . G 5 HOH A 34 334 76 HOH HOH . G 5 HOH A 35 335 83 HOH HOH . G 5 HOH A 36 336 86 HOH HOH . G 5 HOH A 37 337 99 HOH HOH . G 5 HOH A 38 338 19 HOH HOH . G 5 HOH A 39 339 37 HOH HOH . G 5 HOH A 40 340 25 HOH HOH . G 5 HOH A 41 341 2 HOH HOH . G 5 HOH A 42 342 30 HOH HOH . G 5 HOH A 43 343 48 HOH HOH . G 5 HOH A 44 344 40 HOH HOH . G 5 HOH A 45 345 74 HOH HOH . G 5 HOH A 46 346 45 HOH HOH . G 5 HOH A 47 347 3 HOH HOH . G 5 HOH A 48 348 7 HOH HOH . G 5 HOH A 49 349 4 HOH HOH . G 5 HOH A 50 350 11 HOH HOH . G 5 HOH A 51 351 6 HOH HOH . G 5 HOH A 52 352 38 HOH HOH . G 5 HOH A 53 353 50 HOH HOH . G 5 HOH A 54 354 12 HOH HOH . G 5 HOH A 55 355 71 HOH HOH . G 5 HOH A 56 356 54 HOH HOH . G 5 HOH A 57 357 91 HOH HOH . G 5 HOH A 58 358 52 HOH HOH . G 5 HOH A 59 359 1 HOH HOH . G 5 HOH A 60 360 101 HOH HOH . G 5 HOH A 61 361 85 HOH HOH . G 5 HOH A 62 362 28 HOH HOH . G 5 HOH A 63 363 55 HOH HOH . G 5 HOH A 64 364 102 HOH HOH . G 5 HOH A 65 365 14 HOH HOH . G 5 HOH A 66 366 56 HOH HOH . G 5 HOH A 67 367 77 HOH HOH . G 5 HOH A 68 368 32 HOH HOH . G 5 HOH A 69 369 67 HOH HOH . G 5 HOH A 70 370 79 HOH HOH . G 5 HOH A 71 371 96 HOH HOH . G 5 HOH A 72 372 72 HOH HOH . G 5 HOH A 73 373 78 HOH HOH . G 5 HOH A 74 374 43 HOH HOH . G 5 HOH A 75 375 60 HOH HOH . G 5 HOH A 76 376 59 HOH HOH . G 5 HOH A 77 377 92 HOH HOH . G 5 HOH A 78 378 29 HOH HOH . G 5 HOH A 79 379 13 HOH HOH . G 5 HOH A 80 380 63 HOH HOH . G 5 HOH A 81 381 21 HOH HOH . G 5 HOH A 82 382 88 HOH HOH . G 5 HOH A 83 383 75 HOH HOH . G 5 HOH A 84 384 9 HOH HOH . G 5 HOH A 85 385 58 HOH HOH . G 5 HOH A 86 386 42 HOH HOH . G 5 HOH A 87 387 100 HOH HOH . G 5 HOH A 88 388 87 HOH HOH . G 5 HOH A 89 389 84 HOH HOH . G 5 HOH A 90 390 64 HOH HOH . G 5 HOH A 91 391 53 HOH HOH . G 5 HOH A 92 392 44 HOH HOH . G 5 HOH A 93 393 90 HOH HOH . G 5 HOH A 94 394 23 HOH HOH . G 5 HOH A 95 395 61 HOH HOH . G 5 HOH A 96 396 62 HOH HOH . G 5 HOH A 97 397 89 HOH HOH . G 5 HOH A 98 398 93 HOH HOH . G 5 HOH A 99 399 46 HOH HOH . G 5 HOH A 100 400 98 HOH HOH . G 5 HOH A 101 401 27 HOH HOH . G 5 HOH A 102 402 41 HOH HOH . G 5 HOH A 103 403 97 HOH HOH . G 5 HOH A 104 404 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 -21.226 18.841 -5.705 1 45.34 ? C1 GOL 205 A 1 HETATM 2 O O1 GOL . . . F 4 -20.72 19.641 -4.634 1 47.46 ? O1 GOL 205 A 1 HETATM 3 C C2 GOL . . . F 4 -22.726 18.62 -5.521 1 44.58 ? C2 GOL 205 A 1 HETATM 4 O O2 GOL . . . F 4 -23.291 18.58 -6.83 1 46.9 ? O2 GOL 205 A 1 HETATM 5 C C3 GOL . . . F 4 -23.119 17.342 -4.763 1 44.15 ? C3 GOL 205 A 1 HETATM 6 O O3 GOL . . . F 4 -23.585 16.266 -5.632 1 33.57 ? O3 GOL 205 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #