data_5ILW # _model_server_result.job_id uJ3BysmXH4ssLxWjVeq8Pw _model_server_result.datetime_utc '2024-11-05 23:17:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ilw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 5ILW # _exptl.entry_id 5ILW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ILW _cell.length_a 130.115 _cell.length_b 130.115 _cell.length_c 40.632 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ILW _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id ND2 _struct_conn.ptnr1_label_comp_id ASN _struct_conn.ptnr1_label_seq_id 227 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ASN _struct_conn.ptnr1_auth_seq_id 227 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id NAG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NAG _struct_conn.ptnr2_auth_seq_id 801 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.448 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5ILW _atom_sites.fract_transf_matrix[1][1] 0.007686 _atom_sites.fract_transf_matrix[1][2] 0.004437 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008874 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024611 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 801 801 NAG NAG . C 3 URI A 1 802 1 URI URI . D 4 GOL A 1 803 1 GOL GOL . E 5 HOH A 1 901 954 HOH HOH . E 5 HOH A 2 902 949 HOH HOH . E 5 HOH A 3 903 9 HOH HOH . E 5 HOH A 4 904 6 HOH HOH . E 5 HOH A 5 905 17 HOH HOH . E 5 HOH A 6 906 946 HOH HOH . E 5 HOH A 7 907 1066 HOH HOH . E 5 HOH A 8 908 1002 HOH HOH . E 5 HOH A 9 909 955 HOH HOH . E 5 HOH A 10 910 920 HOH HOH . E 5 HOH A 11 911 1054 HOH HOH . E 5 HOH A 12 912 1051 HOH HOH . E 5 HOH A 13 913 930 HOH HOH . E 5 HOH A 14 914 968 HOH HOH . E 5 HOH A 15 915 939 HOH HOH . E 5 HOH A 16 916 994 HOH HOH . E 5 HOH A 17 917 1069 HOH HOH . E 5 HOH A 18 918 924 HOH HOH . E 5 HOH A 19 919 970 HOH HOH . E 5 HOH A 20 920 958 HOH HOH . E 5 HOH A 21 921 916 HOH HOH . E 5 HOH A 22 922 907 HOH HOH . E 5 HOH A 23 923 957 HOH HOH . E 5 HOH A 24 924 2 HOH HOH . E 5 HOH A 25 925 941 HOH HOH . E 5 HOH A 26 926 956 HOH HOH . E 5 HOH A 27 927 1024 HOH HOH . E 5 HOH A 28 928 985 HOH HOH . E 5 HOH A 29 929 1041 HOH HOH . E 5 HOH A 30 930 7 HOH HOH . E 5 HOH A 31 931 925 HOH HOH . E 5 HOH A 32 932 971 HOH HOH . E 5 HOH A 33 933 11 HOH HOH . E 5 HOH A 34 934 14 HOH HOH . E 5 HOH A 35 935 927 HOH HOH . E 5 HOH A 36 936 1028 HOH HOH . E 5 HOH A 37 937 990 HOH HOH . E 5 HOH A 38 938 1006 HOH HOH . E 5 HOH A 39 939 961 HOH HOH . E 5 HOH A 40 940 932 HOH HOH . E 5 HOH A 41 941 18 HOH HOH . E 5 HOH A 42 942 1 HOH HOH . E 5 HOH A 43 943 962 HOH HOH . E 5 HOH A 44 944 935 HOH HOH . E 5 HOH A 45 945 992 HOH HOH . E 5 HOH A 46 946 901 HOH HOH . E 5 HOH A 47 947 1065 HOH HOH . E 5 HOH A 48 948 1007 HOH HOH . E 5 HOH A 49 949 945 HOH HOH . E 5 HOH A 50 950 991 HOH HOH . E 5 HOH A 51 951 1063 HOH HOH . E 5 HOH A 52 952 1068 HOH HOH . E 5 HOH A 53 953 940 HOH HOH . E 5 HOH A 54 954 16 HOH HOH . E 5 HOH A 55 955 915 HOH HOH . E 5 HOH A 56 956 963 HOH HOH . E 5 HOH A 57 957 993 HOH HOH . E 5 HOH A 58 958 934 HOH HOH . E 5 HOH A 59 959 1067 HOH HOH . E 5 HOH A 60 960 1035 HOH HOH . E 5 HOH A 61 961 1012 HOH HOH . E 5 HOH A 62 962 977 HOH HOH . E 5 HOH A 63 963 1060 HOH HOH . E 5 HOH A 64 964 1036 HOH HOH . E 5 HOH A 65 965 1053 HOH HOH . E 5 HOH A 66 966 1056 HOH HOH . E 5 HOH A 67 967 964 HOH HOH . E 5 HOH A 68 968 1059 HOH HOH . E 5 HOH A 69 969 912 HOH HOH . E 5 HOH A 70 970 973 HOH HOH . E 5 HOH A 71 971 967 HOH HOH . E 5 HOH A 72 972 947 HOH HOH . E 5 HOH A 73 973 923 HOH HOH . E 5 HOH A 74 974 942 HOH HOH . E 5 HOH A 75 975 911 HOH HOH . E 5 HOH A 76 976 1040 HOH HOH . E 5 HOH A 77 977 5 HOH HOH . E 5 HOH A 78 978 1019 HOH HOH . E 5 HOH A 79 979 978 HOH HOH . E 5 HOH A 80 980 10 HOH HOH . E 5 HOH A 81 981 926 HOH HOH . E 5 HOH A 82 982 1020 HOH HOH . E 5 HOH A 83 983 1047 HOH HOH . E 5 HOH A 84 984 1070 HOH HOH . E 5 HOH A 85 985 1021 HOH HOH . E 5 HOH A 86 986 943 HOH HOH . E 5 HOH A 87 987 4 HOH HOH . E 5 HOH A 88 988 995 HOH HOH . E 5 HOH A 89 989 972 HOH HOH . E 5 HOH A 90 990 1058 HOH HOH . E 5 HOH A 91 991 909 HOH HOH . E 5 HOH A 92 992 931 HOH HOH . E 5 HOH A 93 993 1000 HOH HOH . E 5 HOH A 94 994 15 HOH HOH . E 5 HOH A 95 995 1057 HOH HOH . E 5 HOH A 96 996 1004 HOH HOH . E 5 HOH A 97 997 922 HOH HOH . E 5 HOH A 98 998 903 HOH HOH . E 5 HOH A 99 999 928 HOH HOH . E 5 HOH A 100 1000 950 HOH HOH . E 5 HOH A 101 1001 944 HOH HOH . E 5 HOH A 102 1002 1043 HOH HOH . E 5 HOH A 103 1003 3 HOH HOH . E 5 HOH A 104 1004 1071 HOH HOH . E 5 HOH A 105 1005 921 HOH HOH . E 5 HOH A 106 1006 1061 HOH HOH . E 5 HOH A 107 1007 976 HOH HOH . E 5 HOH A 108 1008 919 HOH HOH . E 5 HOH A 109 1009 969 HOH HOH . E 5 HOH A 110 1010 1064 HOH HOH . E 5 HOH A 111 1011 1032 HOH HOH . E 5 HOH A 112 1012 938 HOH HOH . E 5 HOH A 113 1013 1055 HOH HOH . E 5 HOH A 114 1014 905 HOH HOH . E 5 HOH A 115 1015 1033 HOH HOH . E 5 HOH A 116 1016 8 HOH HOH . E 5 HOH A 117 1017 1025 HOH HOH . E 5 HOH A 118 1018 1030 HOH HOH . E 5 HOH A 119 1019 1062 HOH HOH . E 5 HOH A 120 1020 998 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 -40.983 -12.597 4.747 1 43.19 ? C1 NAG 801 A 1 HETATM 2 C C2 NAG . . . B 2 -41.288 -12.325 6.228 1 49.46 ? C2 NAG 801 A 1 HETATM 3 C C3 NAG . . . B 2 -42.003 -10.978 6.412 1 49.33 ? C3 NAG 801 A 1 HETATM 4 C C4 NAG . . . B 2 -41.218 -9.89 5.66 1 53.63 ? C4 NAG 801 A 1 HETATM 5 C C5 NAG . . . B 2 -41.194 -10.311 4.169 1 48.24 ? C5 NAG 801 A 1 HETATM 6 C C6 NAG . . . B 2 -40.689 -9.318 3.116 1 49.27 ? C6 NAG 801 A 1 HETATM 7 C C7 NAG . . . B 2 -41.598 -14.662 7.081 1 55.72 ? C7 NAG 801 A 1 HETATM 8 C C8 NAG . . . B 2 -42.658 -15.656 7.475 1 54.84 ? C8 NAG 801 A 1 HETATM 9 N N2 NAG . . . B 2 -42.092 -13.464 6.666 1 51.5 ? N2 NAG 801 A 1 HETATM 10 O O3 NAG . . . B 2 -42.204 -10.645 7.784 1 55.49 ? O3 NAG 801 A 1 HETATM 11 O O4 NAG . . . B 2 -41.823 -8.608 5.887 1 57.83 ? O4 NAG 801 A 1 HETATM 12 O O5 NAG . . . B 2 -40.379 -11.482 4.108 1 44.74 ? O5 NAG 801 A 1 HETATM 13 O O6 NAG . . . B 2 -39.342 -8.907 3.318 1 43.94 ? O6 NAG 801 A 1 HETATM 14 O O7 NAG . . . B 2 -40.394 -14.97 7.135 1 50.3 ? O7 NAG 801 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 14 #