data_5ILW
#
_model_server_result.job_id            stk8AgxtVaIJfDxKDeeiaA 
_model_server_result.datetime_utc      '2025-04-27 14:25:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ilw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":803}' 
#
_entry.id    5ILW 
#
_exptl.entry_id    5ILW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5ILW 
_cell.length_a            130.115 
_cell.length_b            130.115 
_cell.length_c            40.632 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ILW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            ND2 
_struct_conn.ptnr1_label_comp_id            ASN 
_struct_conn.ptnr1_label_seq_id             227 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             ASN 
_struct_conn.ptnr1_auth_seq_id              227 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            C1 
_struct_conn.ptnr2_label_comp_id            NAG 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             NAG 
_struct_conn.ptnr2_auth_seq_id              801 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.448 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     5ILW 
_atom_sites.fract_transf_matrix[1][1]    0.007686 
_atom_sites.fract_transf_matrix[1][2]    0.004437 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008874 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.024611 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 801 801 NAG NAG . 
C 3 URI A 1 802 1 URI URI . 
D 4 GOL A 1 803 1 GOL GOL . 
E 5 HOH A 1 901 954 HOH HOH . 
E 5 HOH A 2 902 949 HOH HOH . 
E 5 HOH A 3 903 9 HOH HOH . 
E 5 HOH A 4 904 6 HOH HOH . 
E 5 HOH A 5 905 17 HOH HOH . 
E 5 HOH A 6 906 946 HOH HOH . 
E 5 HOH A 7 907 1066 HOH HOH . 
E 5 HOH A 8 908 1002 HOH HOH . 
E 5 HOH A 9 909 955 HOH HOH . 
E 5 HOH A 10 910 920 HOH HOH . 
E 5 HOH A 11 911 1054 HOH HOH . 
E 5 HOH A 12 912 1051 HOH HOH . 
E 5 HOH A 13 913 930 HOH HOH . 
E 5 HOH A 14 914 968 HOH HOH . 
E 5 HOH A 15 915 939 HOH HOH . 
E 5 HOH A 16 916 994 HOH HOH . 
E 5 HOH A 17 917 1069 HOH HOH . 
E 5 HOH A 18 918 924 HOH HOH . 
E 5 HOH A 19 919 970 HOH HOH . 
E 5 HOH A 20 920 958 HOH HOH . 
E 5 HOH A 21 921 916 HOH HOH . 
E 5 HOH A 22 922 907 HOH HOH . 
E 5 HOH A 23 923 957 HOH HOH . 
E 5 HOH A 24 924 2 HOH HOH . 
E 5 HOH A 25 925 941 HOH HOH . 
E 5 HOH A 26 926 956 HOH HOH . 
E 5 HOH A 27 927 1024 HOH HOH . 
E 5 HOH A 28 928 985 HOH HOH . 
E 5 HOH A 29 929 1041 HOH HOH . 
E 5 HOH A 30 930 7 HOH HOH . 
E 5 HOH A 31 931 925 HOH HOH . 
E 5 HOH A 32 932 971 HOH HOH . 
E 5 HOH A 33 933 11 HOH HOH . 
E 5 HOH A 34 934 14 HOH HOH . 
E 5 HOH A 35 935 927 HOH HOH . 
E 5 HOH A 36 936 1028 HOH HOH . 
E 5 HOH A 37 937 990 HOH HOH . 
E 5 HOH A 38 938 1006 HOH HOH . 
E 5 HOH A 39 939 961 HOH HOH . 
E 5 HOH A 40 940 932 HOH HOH . 
E 5 HOH A 41 941 18 HOH HOH . 
E 5 HOH A 42 942 1 HOH HOH . 
E 5 HOH A 43 943 962 HOH HOH . 
E 5 HOH A 44 944 935 HOH HOH . 
E 5 HOH A 45 945 992 HOH HOH . 
E 5 HOH A 46 946 901 HOH HOH . 
E 5 HOH A 47 947 1065 HOH HOH . 
E 5 HOH A 48 948 1007 HOH HOH . 
E 5 HOH A 49 949 945 HOH HOH . 
E 5 HOH A 50 950 991 HOH HOH . 
E 5 HOH A 51 951 1063 HOH HOH . 
E 5 HOH A 52 952 1068 HOH HOH . 
E 5 HOH A 53 953 940 HOH HOH . 
E 5 HOH A 54 954 16 HOH HOH . 
E 5 HOH A 55 955 915 HOH HOH . 
E 5 HOH A 56 956 963 HOH HOH . 
E 5 HOH A 57 957 993 HOH HOH . 
E 5 HOH A 58 958 934 HOH HOH . 
E 5 HOH A 59 959 1067 HOH HOH . 
E 5 HOH A 60 960 1035 HOH HOH . 
E 5 HOH A 61 961 1012 HOH HOH . 
E 5 HOH A 62 962 977 HOH HOH . 
E 5 HOH A 63 963 1060 HOH HOH . 
E 5 HOH A 64 964 1036 HOH HOH . 
E 5 HOH A 65 965 1053 HOH HOH . 
E 5 HOH A 66 966 1056 HOH HOH . 
E 5 HOH A 67 967 964 HOH HOH . 
E 5 HOH A 68 968 1059 HOH HOH . 
E 5 HOH A 69 969 912 HOH HOH . 
E 5 HOH A 70 970 973 HOH HOH . 
E 5 HOH A 71 971 967 HOH HOH . 
E 5 HOH A 72 972 947 HOH HOH . 
E 5 HOH A 73 973 923 HOH HOH . 
E 5 HOH A 74 974 942 HOH HOH . 
E 5 HOH A 75 975 911 HOH HOH . 
E 5 HOH A 76 976 1040 HOH HOH . 
E 5 HOH A 77 977 5 HOH HOH . 
E 5 HOH A 78 978 1019 HOH HOH . 
E 5 HOH A 79 979 978 HOH HOH . 
E 5 HOH A 80 980 10 HOH HOH . 
E 5 HOH A 81 981 926 HOH HOH . 
E 5 HOH A 82 982 1020 HOH HOH . 
E 5 HOH A 83 983 1047 HOH HOH . 
E 5 HOH A 84 984 1070 HOH HOH . 
E 5 HOH A 85 985 1021 HOH HOH . 
E 5 HOH A 86 986 943 HOH HOH . 
E 5 HOH A 87 987 4 HOH HOH . 
E 5 HOH A 88 988 995 HOH HOH . 
E 5 HOH A 89 989 972 HOH HOH . 
E 5 HOH A 90 990 1058 HOH HOH . 
E 5 HOH A 91 991 909 HOH HOH . 
E 5 HOH A 92 992 931 HOH HOH . 
E 5 HOH A 93 993 1000 HOH HOH . 
E 5 HOH A 94 994 15 HOH HOH . 
E 5 HOH A 95 995 1057 HOH HOH . 
E 5 HOH A 96 996 1004 HOH HOH . 
E 5 HOH A 97 997 922 HOH HOH . 
E 5 HOH A 98 998 903 HOH HOH . 
E 5 HOH A 99 999 928 HOH HOH . 
E 5 HOH A 100 1000 950 HOH HOH . 
E 5 HOH A 101 1001 944 HOH HOH . 
E 5 HOH A 102 1002 1043 HOH HOH . 
E 5 HOH A 103 1003 3 HOH HOH . 
E 5 HOH A 104 1004 1071 HOH HOH . 
E 5 HOH A 105 1005 921 HOH HOH . 
E 5 HOH A 106 1006 1061 HOH HOH . 
E 5 HOH A 107 1007 976 HOH HOH . 
E 5 HOH A 108 1008 919 HOH HOH . 
E 5 HOH A 109 1009 969 HOH HOH . 
E 5 HOH A 110 1010 1064 HOH HOH . 
E 5 HOH A 111 1011 1032 HOH HOH . 
E 5 HOH A 112 1012 938 HOH HOH . 
E 5 HOH A 113 1013 1055 HOH HOH . 
E 5 HOH A 114 1014 905 HOH HOH . 
E 5 HOH A 115 1015 1033 HOH HOH . 
E 5 HOH A 116 1016 8 HOH HOH . 
E 5 HOH A 117 1017 1025 HOH HOH . 
E 5 HOH A 118 1018 1030 HOH HOH . 
E 5 HOH A 119 1019 1062 HOH HOH . 
E 5 HOH A 120 1020 998 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 -19.782 4.596 -24.015 1 39.97 ? C1 GOL 803 A 1 
HETATM 2 O O1 GOL . . . D 4 -20.016 4.177 -25.373 1 35.07 ? O1 GOL 803 A 1 
HETATM 3 C C2 GOL . . . D 4 -18.768 3.841 -23.125 1 39.15 ? C2 GOL 803 A 1 
HETATM 4 O O2 GOL . . . D 4 -17.723 4.655 -22.504 1 39.62 ? O2 GOL 803 A 1 
HETATM 5 C C3 GOL . . . D 4 -18.095 2.777 -23.938 1 39.7 ? C3 GOL 803 A 1 
HETATM 6 O O3 GOL . . . D 4 -17.456 3.323 -25.056 1 35.86 ? O3 GOL 803 A 1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#