data_5ILX # _model_server_result.job_id 0i4YpO50ROtXi9-KtiCchg _model_server_result.datetime_utc '2024-11-24 03:58:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ilx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5ILX # _exptl.entry_id 5ILX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ILX _cell.length_a 130.186 _cell.length_b 130.186 _cell.length_c 39.976 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ILX _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id ND2 _struct_conn.ptnr1_label_comp_id ASN _struct_conn.ptnr1_label_seq_id 227 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ASN _struct_conn.ptnr1_auth_seq_id 227 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id NAG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NAG _struct_conn.ptnr2_auth_seq_id 302 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.465 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 5ILX _atom_sites.fract_transf_matrix[1][1] 0.007681 _atom_sites.fract_transf_matrix[1][2] 0.004435 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00887 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025015 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 URA A 1 301 302 URA URA . C 3 NAG A 1 302 301 NAG NAG . D 4 EDO A 1 303 1 EDO EDO . E 5 HOH A 1 401 613 HOH HOH . E 5 HOH A 2 402 596 HOH HOH . E 5 HOH A 3 403 659 HOH HOH . E 5 HOH A 4 404 562 HOH HOH . E 5 HOH A 5 405 660 HOH HOH . E 5 HOH A 6 406 658 HOH HOH . E 5 HOH A 7 407 662 HOH HOH . E 5 HOH A 8 408 446 HOH HOH . E 5 HOH A 9 409 507 HOH HOH . E 5 HOH A 10 410 541 HOH HOH . E 5 HOH A 11 411 588 HOH HOH . E 5 HOH A 12 412 593 HOH HOH . E 5 HOH A 13 413 634 HOH HOH . E 5 HOH A 14 414 564 HOH HOH . E 5 HOH A 15 415 586 HOH HOH . E 5 HOH A 16 416 474 HOH HOH . E 5 HOH A 17 417 627 HOH HOH . E 5 HOH A 18 418 525 HOH HOH . E 5 HOH A 19 419 514 HOH HOH . E 5 HOH A 20 420 599 HOH HOH . E 5 HOH A 21 421 620 HOH HOH . E 5 HOH A 22 422 542 HOH HOH . E 5 HOH A 23 423 428 HOH HOH . E 5 HOH A 24 424 636 HOH HOH . E 5 HOH A 25 425 483 HOH HOH . E 5 HOH A 26 426 425 HOH HOH . E 5 HOH A 27 427 421 HOH HOH . E 5 HOH A 28 428 450 HOH HOH . E 5 HOH A 29 429 645 HOH HOH . E 5 HOH A 30 430 630 HOH HOH . E 5 HOH A 31 431 563 HOH HOH . E 5 HOH A 32 432 594 HOH HOH . E 5 HOH A 33 433 462 HOH HOH . E 5 HOH A 34 434 552 HOH HOH . E 5 HOH A 35 435 419 HOH HOH . E 5 HOH A 36 436 423 HOH HOH . E 5 HOH A 37 437 430 HOH HOH . E 5 HOH A 38 438 452 HOH HOH . E 5 HOH A 39 439 511 HOH HOH . E 5 HOH A 40 440 413 HOH HOH . E 5 HOH A 41 441 470 HOH HOH . E 5 HOH A 42 442 469 HOH HOH . E 5 HOH A 43 443 574 HOH HOH . E 5 HOH A 44 444 436 HOH HOH . E 5 HOH A 45 445 510 HOH HOH . E 5 HOH A 46 446 422 HOH HOH . E 5 HOH A 47 447 472 HOH HOH . E 5 HOH A 48 448 557 HOH HOH . E 5 HOH A 49 449 589 HOH HOH . E 5 HOH A 50 450 409 HOH HOH . E 5 HOH A 51 451 545 HOH HOH . E 5 HOH A 52 452 484 HOH HOH . E 5 HOH A 53 453 513 HOH HOH . E 5 HOH A 54 454 524 HOH HOH . E 5 HOH A 55 455 435 HOH HOH . E 5 HOH A 56 456 580 HOH HOH . E 5 HOH A 57 457 454 HOH HOH . E 5 HOH A 58 458 553 HOH HOH . E 5 HOH A 59 459 481 HOH HOH . E 5 HOH A 60 460 522 HOH HOH . E 5 HOH A 61 461 407 HOH HOH . E 5 HOH A 62 462 408 HOH HOH . E 5 HOH A 63 463 602 HOH HOH . E 5 HOH A 64 464 635 HOH HOH . E 5 HOH A 65 465 403 HOH HOH . E 5 HOH A 66 466 609 HOH HOH . E 5 HOH A 67 467 656 HOH HOH . E 5 HOH A 68 468 531 HOH HOH . E 5 HOH A 69 469 438 HOH HOH . E 5 HOH A 70 470 550 HOH HOH . E 5 HOH A 71 471 429 HOH HOH . E 5 HOH A 72 472 414 HOH HOH . E 5 HOH A 73 473 519 HOH HOH . E 5 HOH A 74 474 453 HOH HOH . E 5 HOH A 75 475 526 HOH HOH . E 5 HOH A 76 476 614 HOH HOH . E 5 HOH A 77 477 547 HOH HOH . E 5 HOH A 78 478 464 HOH HOH . E 5 HOH A 79 479 449 HOH HOH . E 5 HOH A 80 480 441 HOH HOH . E 5 HOH A 81 481 418 HOH HOH . E 5 HOH A 82 482 535 HOH HOH . E 5 HOH A 83 483 608 HOH HOH . E 5 HOH A 84 484 401 HOH HOH . E 5 HOH A 85 485 584 HOH HOH . E 5 HOH A 86 486 518 HOH HOH . E 5 HOH A 87 487 509 HOH HOH . E 5 HOH A 88 488 458 HOH HOH . E 5 HOH A 89 489 567 HOH HOH . E 5 HOH A 90 490 432 HOH HOH . E 5 HOH A 91 491 506 HOH HOH . E 5 HOH A 92 492 632 HOH HOH . E 5 HOH A 93 493 601 HOH HOH . E 5 HOH A 94 494 444 HOH HOH . E 5 HOH A 95 495 568 HOH HOH . E 5 HOH A 96 496 440 HOH HOH . E 5 HOH A 97 497 555 HOH HOH . E 5 HOH A 98 498 424 HOH HOH . E 5 HOH A 99 499 434 HOH HOH . E 5 HOH A 100 500 482 HOH HOH . E 5 HOH A 101 501 582 HOH HOH . E 5 HOH A 102 502 603 HOH HOH . E 5 HOH A 103 503 569 HOH HOH . E 5 HOH A 104 504 565 HOH HOH . E 5 HOH A 105 505 488 HOH HOH . E 5 HOH A 106 506 476 HOH HOH . E 5 HOH A 107 507 508 HOH HOH . E 5 HOH A 108 508 451 HOH HOH . E 5 HOH A 109 509 492 HOH HOH . E 5 HOH A 110 510 496 HOH HOH . E 5 HOH A 111 511 566 HOH HOH . E 5 HOH A 112 512 626 HOH HOH . E 5 HOH A 113 513 504 HOH HOH . E 5 HOH A 114 514 463 HOH HOH . E 5 HOH A 115 515 439 HOH HOH . E 5 HOH A 116 516 480 HOH HOH . E 5 HOH A 117 517 426 HOH HOH . E 5 HOH A 118 518 639 HOH HOH . E 5 HOH A 119 519 520 HOH HOH . E 5 HOH A 120 520 447 HOH HOH . E 5 HOH A 121 521 641 HOH HOH . E 5 HOH A 122 522 433 HOH HOH . E 5 HOH A 123 523 411 HOH HOH . E 5 HOH A 124 524 427 HOH HOH . E 5 HOH A 125 525 478 HOH HOH . E 5 HOH A 126 526 532 HOH HOH . E 5 HOH A 127 527 467 HOH HOH . E 5 HOH A 128 528 637 HOH HOH . E 5 HOH A 129 529 485 HOH HOH . E 5 HOH A 130 530 465 HOH HOH . E 5 HOH A 131 531 663 HOH HOH . E 5 HOH A 132 532 534 HOH HOH . E 5 HOH A 133 533 442 HOH HOH . E 5 HOH A 134 534 571 HOH HOH . E 5 HOH A 135 535 623 HOH HOH . E 5 HOH A 136 536 605 HOH HOH . E 5 HOH A 137 537 471 HOH HOH . E 5 HOH A 138 538 598 HOH HOH . E 5 HOH A 139 539 443 HOH HOH . E 5 HOH A 140 540 405 HOH HOH . E 5 HOH A 141 541 578 HOH HOH . E 5 HOH A 142 542 420 HOH HOH . E 5 HOH A 143 543 477 HOH HOH . E 5 HOH A 144 544 417 HOH HOH . E 5 HOH A 145 545 486 HOH HOH . E 5 HOH A 146 546 416 HOH HOH . E 5 HOH A 147 547 415 HOH HOH . E 5 HOH A 148 548 501 HOH HOH . E 5 HOH A 149 549 600 HOH HOH . E 5 HOH A 150 550 459 HOH HOH . E 5 HOH A 151 551 517 HOH HOH . E 5 HOH A 152 552 633 HOH HOH . E 5 HOH A 153 553 530 HOH HOH . E 5 HOH A 154 554 499 HOH HOH . E 5 HOH A 155 555 490 HOH HOH . E 5 HOH A 156 556 581 HOH HOH . E 5 HOH A 157 557 497 HOH HOH . E 5 HOH A 158 558 468 HOH HOH . E 5 HOH A 159 559 529 HOH HOH . E 5 HOH A 160 560 473 HOH HOH . E 5 HOH A 161 561 402 HOH HOH . E 5 HOH A 162 562 606 HOH HOH . E 5 HOH A 163 563 437 HOH HOH . E 5 HOH A 164 564 466 HOH HOH . E 5 HOH A 165 565 461 HOH HOH . E 5 HOH A 166 566 502 HOH HOH . E 5 HOH A 167 567 410 HOH HOH . E 5 HOH A 168 568 494 HOH HOH . E 5 HOH A 169 569 455 HOH HOH . E 5 HOH A 170 570 406 HOH HOH . E 5 HOH A 171 571 475 HOH HOH . E 5 HOH A 172 572 448 HOH HOH . E 5 HOH A 173 573 544 HOH HOH . E 5 HOH A 174 574 500 HOH HOH . E 5 HOH A 175 575 457 HOH HOH . E 5 HOH A 176 576 489 HOH HOH . E 5 HOH A 177 577 648 HOH HOH . E 5 HOH A 178 578 625 HOH HOH . E 5 HOH A 179 579 456 HOH HOH . E 5 HOH A 180 580 654 HOH HOH . E 5 HOH A 181 581 412 HOH HOH . E 5 HOH A 182 582 516 HOH HOH . E 5 HOH A 183 583 493 HOH HOH . E 5 HOH A 184 584 431 HOH HOH . E 5 HOH A 185 585 527 HOH HOH . E 5 HOH A 186 586 616 HOH HOH . E 5 HOH A 187 587 404 HOH HOH . E 5 HOH A 188 588 515 HOH HOH . E 5 HOH A 189 589 561 HOH HOH . E 5 HOH A 190 590 577 HOH HOH . E 5 HOH A 191 591 570 HOH HOH . E 5 HOH A 192 592 597 HOH HOH . E 5 HOH A 193 593 543 HOH HOH . E 5 HOH A 194 594 652 HOH HOH . E 5 HOH A 195 595 653 HOH HOH . E 5 HOH A 196 596 487 HOH HOH . E 5 HOH A 197 597 644 HOH HOH . E 5 HOH A 198 598 579 HOH HOH . E 5 HOH A 199 599 548 HOH HOH . E 5 HOH A 200 600 585 HOH HOH . E 5 HOH A 201 601 479 HOH HOH . E 5 HOH A 202 602 657 HOH HOH . E 5 HOH A 203 603 572 HOH HOH . E 5 HOH A 204 604 538 HOH HOH . E 5 HOH A 205 605 533 HOH HOH . E 5 HOH A 206 606 498 HOH HOH . E 5 HOH A 207 607 495 HOH HOH . E 5 HOH A 208 608 558 HOH HOH . E 5 HOH A 209 609 539 HOH HOH . E 5 HOH A 210 610 612 HOH HOH . E 5 HOH A 211 611 491 HOH HOH . E 5 HOH A 212 612 629 HOH HOH . E 5 HOH A 213 613 537 HOH HOH . E 5 HOH A 214 614 587 HOH HOH . E 5 HOH A 215 615 622 HOH HOH . E 5 HOH A 216 616 651 HOH HOH . E 5 HOH A 217 617 624 HOH HOH . E 5 HOH A 218 618 610 HOH HOH . E 5 HOH A 219 619 549 HOH HOH . E 5 HOH A 220 620 573 HOH HOH . E 5 HOH A 221 621 460 HOH HOH . E 5 HOH A 222 622 631 HOH HOH . E 5 HOH A 223 623 556 HOH HOH . E 5 HOH A 224 624 583 HOH HOH . E 5 HOH A 225 625 512 HOH HOH . E 5 HOH A 226 626 554 HOH HOH . E 5 HOH A 227 627 638 HOH HOH . E 5 HOH A 228 628 592 HOH HOH . E 5 HOH A 229 629 619 HOH HOH . E 5 HOH A 230 630 649 HOH HOH . E 5 HOH A 231 631 575 HOH HOH . E 5 HOH A 232 632 540 HOH HOH . E 5 HOH A 233 633 647 HOH HOH . E 5 HOH A 234 634 591 HOH HOH . E 5 HOH A 235 635 560 HOH HOH . E 5 HOH A 236 636 650 HOH HOH . E 5 HOH A 237 637 523 HOH HOH . E 5 HOH A 238 638 618 HOH HOH . E 5 HOH A 239 639 503 HOH HOH . E 5 HOH A 240 640 646 HOH HOH . E 5 HOH A 241 641 640 HOH HOH . E 5 HOH A 242 642 643 HOH HOH . E 5 HOH A 243 643 551 HOH HOH . E 5 HOH A 244 644 607 HOH HOH . E 5 HOH A 245 645 615 HOH HOH . E 5 HOH A 246 646 617 HOH HOH . E 5 HOH A 247 647 642 HOH HOH . E 5 HOH A 248 648 576 HOH HOH . E 5 HOH A 249 649 611 HOH HOH . E 5 HOH A 250 650 521 HOH HOH . E 5 HOH A 251 651 621 HOH HOH . E 5 HOH A 252 652 559 HOH HOH . E 5 HOH A 253 653 536 HOH HOH . E 5 HOH A 254 654 604 HOH HOH . E 5 HOH A 255 655 595 HOH HOH . E 5 HOH A 256 656 546 HOH HOH . E 5 HOH A 257 657 655 HOH HOH . E 5 HOH A 258 658 528 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 -3.405 -25.496 -6.803 1 32.85 ? C1 EDO 303 A 1 HETATM 2 O O1 EDO . . . D 4 -4.227 -24.284 -6.8 1 48.41 ? O1 EDO 303 A 1 HETATM 3 C C2 EDO . . . D 4 -2.009 -24.998 -6.39 1 36.48 ? C2 EDO 303 A 1 HETATM 4 O O2 EDO . . . D 4 -0.962 -26.023 -6.276 1 31.92 ? O2 EDO 303 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #