data_5ILX
#
_model_server_result.job_id            Tzno-vxMghd-zPj02m4-3Q 
_model_server_result.datetime_utc      '2024-11-06 03:11:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ilx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    5ILX 
#
_exptl.entry_id    5ILX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5ILX 
_cell.length_a            130.186 
_cell.length_b            130.186 
_cell.length_c            39.976 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ILX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            ND2 
_struct_conn.ptnr1_label_comp_id            ASN 
_struct_conn.ptnr1_label_seq_id             227 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             ASN 
_struct_conn.ptnr1_auth_seq_id              227 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            C 
_struct_conn.ptnr2_label_atom_id            C1 
_struct_conn.ptnr2_label_comp_id            NAG 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             NAG 
_struct_conn.ptnr2_auth_seq_id              302 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.465 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 70 n n 
C1 C2 EDO sing 71 n n 
C1 H11 EDO sing 72 n n 
C1 H12 EDO sing 73 n n 
O1 HO1 EDO sing 74 n n 
C2 O2 EDO sing 75 n n 
C2 H21 EDO sing 76 n n 
C2 H22 EDO sing 77 n n 
O2 HO2 EDO sing 78 n n 
#
_atom_sites.entry_id                     5ILX 
_atom_sites.fract_transf_matrix[1][1]    0.007681 
_atom_sites.fract_transf_matrix[1][2]    0.004435 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00887 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025015 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 URA A 1 301 302 URA URA . 
C 3 NAG A 1 302 301 NAG NAG . 
D 4 EDO A 1 303 1 EDO EDO . 
E 5 HOH A 1 401 613 HOH HOH . 
E 5 HOH A 2 402 596 HOH HOH . 
E 5 HOH A 3 403 659 HOH HOH . 
E 5 HOH A 4 404 562 HOH HOH . 
E 5 HOH A 5 405 660 HOH HOH . 
E 5 HOH A 6 406 658 HOH HOH . 
E 5 HOH A 7 407 662 HOH HOH . 
E 5 HOH A 8 408 446 HOH HOH . 
E 5 HOH A 9 409 507 HOH HOH . 
E 5 HOH A 10 410 541 HOH HOH . 
E 5 HOH A 11 411 588 HOH HOH . 
E 5 HOH A 12 412 593 HOH HOH . 
E 5 HOH A 13 413 634 HOH HOH . 
E 5 HOH A 14 414 564 HOH HOH . 
E 5 HOH A 15 415 586 HOH HOH . 
E 5 HOH A 16 416 474 HOH HOH . 
E 5 HOH A 17 417 627 HOH HOH . 
E 5 HOH A 18 418 525 HOH HOH . 
E 5 HOH A 19 419 514 HOH HOH . 
E 5 HOH A 20 420 599 HOH HOH . 
E 5 HOH A 21 421 620 HOH HOH . 
E 5 HOH A 22 422 542 HOH HOH . 
E 5 HOH A 23 423 428 HOH HOH . 
E 5 HOH A 24 424 636 HOH HOH . 
E 5 HOH A 25 425 483 HOH HOH . 
E 5 HOH A 26 426 425 HOH HOH . 
E 5 HOH A 27 427 421 HOH HOH . 
E 5 HOH A 28 428 450 HOH HOH . 
E 5 HOH A 29 429 645 HOH HOH . 
E 5 HOH A 30 430 630 HOH HOH . 
E 5 HOH A 31 431 563 HOH HOH . 
E 5 HOH A 32 432 594 HOH HOH . 
E 5 HOH A 33 433 462 HOH HOH . 
E 5 HOH A 34 434 552 HOH HOH . 
E 5 HOH A 35 435 419 HOH HOH . 
E 5 HOH A 36 436 423 HOH HOH . 
E 5 HOH A 37 437 430 HOH HOH . 
E 5 HOH A 38 438 452 HOH HOH . 
E 5 HOH A 39 439 511 HOH HOH . 
E 5 HOH A 40 440 413 HOH HOH . 
E 5 HOH A 41 441 470 HOH HOH . 
E 5 HOH A 42 442 469 HOH HOH . 
E 5 HOH A 43 443 574 HOH HOH . 
E 5 HOH A 44 444 436 HOH HOH . 
E 5 HOH A 45 445 510 HOH HOH . 
E 5 HOH A 46 446 422 HOH HOH . 
E 5 HOH A 47 447 472 HOH HOH . 
E 5 HOH A 48 448 557 HOH HOH . 
E 5 HOH A 49 449 589 HOH HOH . 
E 5 HOH A 50 450 409 HOH HOH . 
E 5 HOH A 51 451 545 HOH HOH . 
E 5 HOH A 52 452 484 HOH HOH . 
E 5 HOH A 53 453 513 HOH HOH . 
E 5 HOH A 54 454 524 HOH HOH . 
E 5 HOH A 55 455 435 HOH HOH . 
E 5 HOH A 56 456 580 HOH HOH . 
E 5 HOH A 57 457 454 HOH HOH . 
E 5 HOH A 58 458 553 HOH HOH . 
E 5 HOH A 59 459 481 HOH HOH . 
E 5 HOH A 60 460 522 HOH HOH . 
E 5 HOH A 61 461 407 HOH HOH . 
E 5 HOH A 62 462 408 HOH HOH . 
E 5 HOH A 63 463 602 HOH HOH . 
E 5 HOH A 64 464 635 HOH HOH . 
E 5 HOH A 65 465 403 HOH HOH . 
E 5 HOH A 66 466 609 HOH HOH . 
E 5 HOH A 67 467 656 HOH HOH . 
E 5 HOH A 68 468 531 HOH HOH . 
E 5 HOH A 69 469 438 HOH HOH . 
E 5 HOH A 70 470 550 HOH HOH . 
E 5 HOH A 71 471 429 HOH HOH . 
E 5 HOH A 72 472 414 HOH HOH . 
E 5 HOH A 73 473 519 HOH HOH . 
E 5 HOH A 74 474 453 HOH HOH . 
E 5 HOH A 75 475 526 HOH HOH . 
E 5 HOH A 76 476 614 HOH HOH . 
E 5 HOH A 77 477 547 HOH HOH . 
E 5 HOH A 78 478 464 HOH HOH . 
E 5 HOH A 79 479 449 HOH HOH . 
E 5 HOH A 80 480 441 HOH HOH . 
E 5 HOH A 81 481 418 HOH HOH . 
E 5 HOH A 82 482 535 HOH HOH . 
E 5 HOH A 83 483 608 HOH HOH . 
E 5 HOH A 84 484 401 HOH HOH . 
E 5 HOH A 85 485 584 HOH HOH . 
E 5 HOH A 86 486 518 HOH HOH . 
E 5 HOH A 87 487 509 HOH HOH . 
E 5 HOH A 88 488 458 HOH HOH . 
E 5 HOH A 89 489 567 HOH HOH . 
E 5 HOH A 90 490 432 HOH HOH . 
E 5 HOH A 91 491 506 HOH HOH . 
E 5 HOH A 92 492 632 HOH HOH . 
E 5 HOH A 93 493 601 HOH HOH . 
E 5 HOH A 94 494 444 HOH HOH . 
E 5 HOH A 95 495 568 HOH HOH . 
E 5 HOH A 96 496 440 HOH HOH . 
E 5 HOH A 97 497 555 HOH HOH . 
E 5 HOH A 98 498 424 HOH HOH . 
E 5 HOH A 99 499 434 HOH HOH . 
E 5 HOH A 100 500 482 HOH HOH . 
E 5 HOH A 101 501 582 HOH HOH . 
E 5 HOH A 102 502 603 HOH HOH . 
E 5 HOH A 103 503 569 HOH HOH . 
E 5 HOH A 104 504 565 HOH HOH . 
E 5 HOH A 105 505 488 HOH HOH . 
E 5 HOH A 106 506 476 HOH HOH . 
E 5 HOH A 107 507 508 HOH HOH . 
E 5 HOH A 108 508 451 HOH HOH . 
E 5 HOH A 109 509 492 HOH HOH . 
E 5 HOH A 110 510 496 HOH HOH . 
E 5 HOH A 111 511 566 HOH HOH . 
E 5 HOH A 112 512 626 HOH HOH . 
E 5 HOH A 113 513 504 HOH HOH . 
E 5 HOH A 114 514 463 HOH HOH . 
E 5 HOH A 115 515 439 HOH HOH . 
E 5 HOH A 116 516 480 HOH HOH . 
E 5 HOH A 117 517 426 HOH HOH . 
E 5 HOH A 118 518 639 HOH HOH . 
E 5 HOH A 119 519 520 HOH HOH . 
E 5 HOH A 120 520 447 HOH HOH . 
E 5 HOH A 121 521 641 HOH HOH . 
E 5 HOH A 122 522 433 HOH HOH . 
E 5 HOH A 123 523 411 HOH HOH . 
E 5 HOH A 124 524 427 HOH HOH . 
E 5 HOH A 125 525 478 HOH HOH . 
E 5 HOH A 126 526 532 HOH HOH . 
E 5 HOH A 127 527 467 HOH HOH . 
E 5 HOH A 128 528 637 HOH HOH . 
E 5 HOH A 129 529 485 HOH HOH . 
E 5 HOH A 130 530 465 HOH HOH . 
E 5 HOH A 131 531 663 HOH HOH . 
E 5 HOH A 132 532 534 HOH HOH . 
E 5 HOH A 133 533 442 HOH HOH . 
E 5 HOH A 134 534 571 HOH HOH . 
E 5 HOH A 135 535 623 HOH HOH . 
E 5 HOH A 136 536 605 HOH HOH . 
E 5 HOH A 137 537 471 HOH HOH . 
E 5 HOH A 138 538 598 HOH HOH . 
E 5 HOH A 139 539 443 HOH HOH . 
E 5 HOH A 140 540 405 HOH HOH . 
E 5 HOH A 141 541 578 HOH HOH . 
E 5 HOH A 142 542 420 HOH HOH . 
E 5 HOH A 143 543 477 HOH HOH . 
E 5 HOH A 144 544 417 HOH HOH . 
E 5 HOH A 145 545 486 HOH HOH . 
E 5 HOH A 146 546 416 HOH HOH . 
E 5 HOH A 147 547 415 HOH HOH . 
E 5 HOH A 148 548 501 HOH HOH . 
E 5 HOH A 149 549 600 HOH HOH . 
E 5 HOH A 150 550 459 HOH HOH . 
E 5 HOH A 151 551 517 HOH HOH . 
E 5 HOH A 152 552 633 HOH HOH . 
E 5 HOH A 153 553 530 HOH HOH . 
E 5 HOH A 154 554 499 HOH HOH . 
E 5 HOH A 155 555 490 HOH HOH . 
E 5 HOH A 156 556 581 HOH HOH . 
E 5 HOH A 157 557 497 HOH HOH . 
E 5 HOH A 158 558 468 HOH HOH . 
E 5 HOH A 159 559 529 HOH HOH . 
E 5 HOH A 160 560 473 HOH HOH . 
E 5 HOH A 161 561 402 HOH HOH . 
E 5 HOH A 162 562 606 HOH HOH . 
E 5 HOH A 163 563 437 HOH HOH . 
E 5 HOH A 164 564 466 HOH HOH . 
E 5 HOH A 165 565 461 HOH HOH . 
E 5 HOH A 166 566 502 HOH HOH . 
E 5 HOH A 167 567 410 HOH HOH . 
E 5 HOH A 168 568 494 HOH HOH . 
E 5 HOH A 169 569 455 HOH HOH . 
E 5 HOH A 170 570 406 HOH HOH . 
E 5 HOH A 171 571 475 HOH HOH . 
E 5 HOH A 172 572 448 HOH HOH . 
E 5 HOH A 173 573 544 HOH HOH . 
E 5 HOH A 174 574 500 HOH HOH . 
E 5 HOH A 175 575 457 HOH HOH . 
E 5 HOH A 176 576 489 HOH HOH . 
E 5 HOH A 177 577 648 HOH HOH . 
E 5 HOH A 178 578 625 HOH HOH . 
E 5 HOH A 179 579 456 HOH HOH . 
E 5 HOH A 180 580 654 HOH HOH . 
E 5 HOH A 181 581 412 HOH HOH . 
E 5 HOH A 182 582 516 HOH HOH . 
E 5 HOH A 183 583 493 HOH HOH . 
E 5 HOH A 184 584 431 HOH HOH . 
E 5 HOH A 185 585 527 HOH HOH . 
E 5 HOH A 186 586 616 HOH HOH . 
E 5 HOH A 187 587 404 HOH HOH . 
E 5 HOH A 188 588 515 HOH HOH . 
E 5 HOH A 189 589 561 HOH HOH . 
E 5 HOH A 190 590 577 HOH HOH . 
E 5 HOH A 191 591 570 HOH HOH . 
E 5 HOH A 192 592 597 HOH HOH . 
E 5 HOH A 193 593 543 HOH HOH . 
E 5 HOH A 194 594 652 HOH HOH . 
E 5 HOH A 195 595 653 HOH HOH . 
E 5 HOH A 196 596 487 HOH HOH . 
E 5 HOH A 197 597 644 HOH HOH . 
E 5 HOH A 198 598 579 HOH HOH . 
E 5 HOH A 199 599 548 HOH HOH . 
E 5 HOH A 200 600 585 HOH HOH . 
E 5 HOH A 201 601 479 HOH HOH . 
E 5 HOH A 202 602 657 HOH HOH . 
E 5 HOH A 203 603 572 HOH HOH . 
E 5 HOH A 204 604 538 HOH HOH . 
E 5 HOH A 205 605 533 HOH HOH . 
E 5 HOH A 206 606 498 HOH HOH . 
E 5 HOH A 207 607 495 HOH HOH . 
E 5 HOH A 208 608 558 HOH HOH . 
E 5 HOH A 209 609 539 HOH HOH . 
E 5 HOH A 210 610 612 HOH HOH . 
E 5 HOH A 211 611 491 HOH HOH . 
E 5 HOH A 212 612 629 HOH HOH . 
E 5 HOH A 213 613 537 HOH HOH . 
E 5 HOH A 214 614 587 HOH HOH . 
E 5 HOH A 215 615 622 HOH HOH . 
E 5 HOH A 216 616 651 HOH HOH . 
E 5 HOH A 217 617 624 HOH HOH . 
E 5 HOH A 218 618 610 HOH HOH . 
E 5 HOH A 219 619 549 HOH HOH . 
E 5 HOH A 220 620 573 HOH HOH . 
E 5 HOH A 221 621 460 HOH HOH . 
E 5 HOH A 222 622 631 HOH HOH . 
E 5 HOH A 223 623 556 HOH HOH . 
E 5 HOH A 224 624 583 HOH HOH . 
E 5 HOH A 225 625 512 HOH HOH . 
E 5 HOH A 226 626 554 HOH HOH . 
E 5 HOH A 227 627 638 HOH HOH . 
E 5 HOH A 228 628 592 HOH HOH . 
E 5 HOH A 229 629 619 HOH HOH . 
E 5 HOH A 230 630 649 HOH HOH . 
E 5 HOH A 231 631 575 HOH HOH . 
E 5 HOH A 232 632 540 HOH HOH . 
E 5 HOH A 233 633 647 HOH HOH . 
E 5 HOH A 234 634 591 HOH HOH . 
E 5 HOH A 235 635 560 HOH HOH . 
E 5 HOH A 236 636 650 HOH HOH . 
E 5 HOH A 237 637 523 HOH HOH . 
E 5 HOH A 238 638 618 HOH HOH . 
E 5 HOH A 239 639 503 HOH HOH . 
E 5 HOH A 240 640 646 HOH HOH . 
E 5 HOH A 241 641 640 HOH HOH . 
E 5 HOH A 242 642 643 HOH HOH . 
E 5 HOH A 243 643 551 HOH HOH . 
E 5 HOH A 244 644 607 HOH HOH . 
E 5 HOH A 245 645 615 HOH HOH . 
E 5 HOH A 246 646 617 HOH HOH . 
E 5 HOH A 247 647 642 HOH HOH . 
E 5 HOH A 248 648 576 HOH HOH . 
E 5 HOH A 249 649 611 HOH HOH . 
E 5 HOH A 250 650 521 HOH HOH . 
E 5 HOH A 251 651 621 HOH HOH . 
E 5 HOH A 252 652 559 HOH HOH . 
E 5 HOH A 253 653 536 HOH HOH . 
E 5 HOH A 254 654 604 HOH HOH . 
E 5 HOH A 255 655 595 HOH HOH . 
E 5 HOH A 256 656 546 HOH HOH . 
E 5 HOH A 257 657 655 HOH HOH . 
E 5 HOH A 258 658 528 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 4 -3.405 -25.496 -6.803 1 32.85 ? C1 EDO 303 A 1 
HETATM 2 O O1 EDO . . . D 4 -4.227 -24.284 -6.8 1 48.41 ? O1 EDO 303 A 1 
HETATM 3 C C2 EDO . . . D 4 -2.009 -24.998 -6.39 1 36.48 ? C2 EDO 303 A 1 
HETATM 4 O O2 EDO . . . D 4 -0.962 -26.023 -6.276 1 31.92 ? O2 EDO 303 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#