data_5ILY # _model_server_result.job_id pqZPRbGJuqclwoPZ7HObuw _model_server_result.datetime_utc '2024-11-05 05:26:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ily # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":604}' # _entry.id 5ILY # _exptl.entry_id 5ILY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 209.24 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ILY _cell.length_a 126.74 _cell.length_b 126.74 _cell.length_c 124.76 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ILY _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 303 A ASP 301 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc2 A OD2 ASP 303 A ASP 301 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc3 A OD1 ASP 303 A ASP 301 1_555 D MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc4 A OD1 ASP 446 A ASP 444 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc5 A OG1 THR 450 A THR 448 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc6 A OE2 GLU 454 A GLU 452 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc7 B MG MG . A MG 601 1_555 F O3 DPO . A DPO 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc8 B MG MG . A MG 601 1_555 F O7 DPO . A DPO 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc9 B MG MG . A MG 601 1_555 G O HOH . A HOH 721 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc10 C MG MG . A MG 602 1_555 F O1 DPO . A DPO 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc11 C MG MG . A MG 602 1_555 F O5 DPO . A DPO 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc12 C MG MG . A MG 602 1_555 G O HOH . A HOH 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc13 D MG MG . A MG 603 1_555 F O5 DPO . A DPO 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc14 D MG MG . A MG 603 1_555 G O HOH . A HOH 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? # _chem_comp.formula 'C8 H19 N O5' _chem_comp.formula_weight 209.24 _chem_comp.id BTB _chem_comp.mon_nstd_flag . _chem_comp.name 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'BIS-TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BTB sing 70 n n C1 C2 BTB sing 71 n n C1 H11 BTB sing 72 n n C1 H12 BTB sing 73 n n O1 HO1 BTB sing 74 n n C2 C3 BTB sing 75 n n C2 C4 BTB sing 76 n n C2 N BTB sing 77 n n C3 O3 BTB sing 78 n n C3 H31 BTB sing 79 n n C3 H32 BTB sing 80 n n O3 HO3 BTB sing 81 n n C4 O4 BTB sing 82 n n C4 H41 BTB sing 83 n n C4 H42 BTB sing 84 n n O4 HO4 BTB sing 85 n n N C5 BTB sing 86 n n N C7 BTB sing 87 n n C5 C6 BTB sing 88 n n C5 H51 BTB sing 89 n n C5 H52 BTB sing 90 n n C6 O6 BTB sing 91 n n C6 H61 BTB sing 92 n n C6 H62 BTB sing 93 n n O6 HO6 BTB sing 94 n n C7 C8 BTB sing 95 n n C7 H71 BTB sing 96 n n C7 H72 BTB sing 97 n n C8 O8 BTB sing 98 n n C8 H81 BTB sing 99 n n C8 H82 BTB sing 100 n n O8 HO8 BTB sing 101 n n # _atom_sites.entry_id 5ILY _atom_sites.fract_transf_matrix[1][1] 0.00789 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00789 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008015 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 601 1 MG MG . C 2 MG A 1 602 2 MG MG . D 2 MG A 1 603 3 MG MG . E 3 BTB A 1 604 549 BTB BTB . F 4 DPO A 1 605 600 DPO DPO . G 5 HOH A 1 701 54 HOH HOH . G 5 HOH A 2 702 33 HOH HOH . G 5 HOH A 3 703 6 HOH HOH . G 5 HOH A 4 704 13 HOH HOH . G 5 HOH A 5 705 31 HOH HOH . G 5 HOH A 6 706 51 HOH HOH . G 5 HOH A 7 707 1 HOH HOH . G 5 HOH A 8 708 12 HOH HOH . G 5 HOH A 9 709 58 HOH HOH . G 5 HOH A 10 710 11 HOH HOH . G 5 HOH A 11 711 22 HOH HOH . G 5 HOH A 12 712 38 HOH HOH . G 5 HOH A 13 713 23 HOH HOH . G 5 HOH A 14 714 53 HOH HOH . G 5 HOH A 15 715 8 HOH HOH . G 5 HOH A 16 716 5 HOH HOH . G 5 HOH A 17 717 14 HOH HOH . G 5 HOH A 18 718 20 HOH HOH . G 5 HOH A 19 719 27 HOH HOH . G 5 HOH A 20 720 57 HOH HOH . G 5 HOH A 21 721 35 HOH HOH . G 5 HOH A 22 722 46 HOH HOH . G 5 HOH A 23 723 16 HOH HOH . G 5 HOH A 24 724 40 HOH HOH . G 5 HOH A 25 725 2 HOH HOH . G 5 HOH A 26 726 9 HOH HOH . G 5 HOH A 27 727 37 HOH HOH . G 5 HOH A 28 728 10 HOH HOH . G 5 HOH A 29 729 61 HOH HOH . G 5 HOH A 30 730 28 HOH HOH . G 5 HOH A 31 731 59 HOH HOH . G 5 HOH A 32 732 64 HOH HOH . G 5 HOH A 33 733 55 HOH HOH . G 5 HOH A 34 734 43 HOH HOH . G 5 HOH A 35 735 21 HOH HOH . G 5 HOH A 36 736 7 HOH HOH . G 5 HOH A 37 737 56 HOH HOH . G 5 HOH A 38 738 17 HOH HOH . G 5 HOH A 39 739 45 HOH HOH . G 5 HOH A 40 740 62 HOH HOH . G 5 HOH A 41 741 41 HOH HOH . G 5 HOH A 42 742 42 HOH HOH . G 5 HOH A 43 743 18 HOH HOH . G 5 HOH A 44 744 34 HOH HOH . G 5 HOH A 45 745 24 HOH HOH . G 5 HOH A 46 746 36 HOH HOH . G 5 HOH A 47 747 32 HOH HOH . G 5 HOH A 48 748 15 HOH HOH . G 5 HOH A 49 749 4 HOH HOH . G 5 HOH A 50 750 52 HOH HOH . G 5 HOH A 51 751 48 HOH HOH . G 5 HOH A 52 752 29 HOH HOH . G 5 HOH A 53 753 25 HOH HOH . G 5 HOH A 54 754 3 HOH HOH . G 5 HOH A 55 755 60 HOH HOH . G 5 HOH A 56 756 19 HOH HOH . G 5 HOH A 57 757 50 HOH HOH . G 5 HOH A 58 758 44 HOH HOH . G 5 HOH A 59 759 30 HOH HOH . G 5 HOH A 60 760 49 HOH HOH . G 5 HOH A 61 761 39 HOH HOH . G 5 HOH A 62 762 63 HOH HOH . G 5 HOH A 63 763 26 HOH HOH . G 5 HOH A 64 764 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BTB . . . E 3 22.352 78.671 16.688 1 115.52 ? C1 BTB 604 A 1 HETATM 2 O O1 BTB . . . E 3 21.914 77.402 17.191 1 110.85 ? O1 BTB 604 A 1 HETATM 3 C C2 BTB . . . E 3 22.491 78.573 15.178 1 117.83 ? C2 BTB 604 A 1 HETATM 4 C C3 BTB . . . E 3 22.821 79.975 14.665 1 116.34 ? C3 BTB 604 A 1 HETATM 5 O O3 BTB . . . E 3 23.12 80.037 13.265 1 113.36 ? O3 BTB 604 A 1 HETATM 6 C C4 BTB . . . E 3 21.136 78.072 14.703 1 121.53 ? C4 BTB 604 A 1 HETATM 7 O O4 BTB . . . E 3 20.335 79.204 14.333 1 125.77 ? O4 BTB 604 A 1 HETATM 8 N N BTB . . . E 3 23.619 77.601 15.012 1 116.83 ? N BTB 604 A 1 HETATM 9 C C5 BTB . . . E 3 24.075 77.099 13.678 1 119 ? C5 BTB 604 A 1 HETATM 10 C C6 BTB . . . E 3 23.158 77.116 12.459 1 119.88 ? C6 BTB 604 A 1 HETATM 11 O O6 BTB . . . E 3 23.903 77.297 11.244 1 120.59 ? O6 BTB 604 A 1 HETATM 12 C C7 BTB . . . E 3 24.788 78.159 15.744 1 109.34 ? C7 BTB 604 A 1 HETATM 13 C C8 BTB . . . E 3 26.002 78.395 14.84 1 105.91 ? C8 BTB 604 A 1 HETATM 14 O O8 BTB . . . E 3 25.782 79.505 13.954 1 102.91 ? O8 BTB 604 A 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #