data_5IME
#
_model_server_result.job_id            XfGXocvPsiwtlKN22clvfw 
_model_server_result.datetime_utc      '2024-10-18 16:23:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ime 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    5IME 
#
_exptl.entry_id    5IME 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              451.909 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            8-(3-aminopropyl)-6-[2-chloro-4-(3-methyl-2-oxopyrazin-1(2H)-yl)phenyl]-2-(methylamino)pyrido[2,3-d]pyrimidin-7(8H)-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.71 
_cell.angle_gamma         90 
_cell.entry_id            5IME 
_cell.length_a            60.48 
_cell.length_b            82.82 
_cell.length_c            65.89 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5IME 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C22 H22 Cl N7 O2' 
_chem_comp.formula_weight    451.909 
_chem_comp.id                6BZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              8-(3-aminopropyl)-6-[2-chloro-4-(3-methyl-2-oxopyrazin-1(2H)-yl)phenyl]-2-(methylamino)pyrido[2,3-d]pyrimidin-7(8H)-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N31 C32 6BZ sing 1 n n 
N31 C21 6BZ sing 2 n n 
N20 C21 6BZ doub 3 n y 
N20 C19 6BZ sing 4 n y 
C21 N22 6BZ sing 5 n y 
C19 C18 6BZ doub 6 n y 
N22 C23 6BZ doub 7 n y 
C18 C23 6BZ sing 8 n y 
C18 C17 6BZ sing 9 n n 
C23 N24 6BZ sing 10 n n 
C17 C16 6BZ doub 11 n n 
N24 C27 6BZ sing 12 n n 
N24 C25 6BZ sing 13 n n 
C16 C25 6BZ sing 14 n n 
C16 C12 6BZ sing 15 n n 
C28 C27 6BZ sing 16 n n 
C28 C29 6BZ sing 17 n n 
C25 O26 6BZ doub 18 n n 
C12 C11 6BZ doub 19 n y 
C12 C13 6BZ sing 20 n y 
CL1 C13 6BZ sing 21 n n 
C29 N30 6BZ sing 22 n n 
C11 C10 6BZ sing 23 n y 
C13 C14 6BZ doub 24 n y 
C10 C9 6BZ doub 25 n y 
C14 C9 6BZ sing 26 n y 
C9 N5 6BZ sing 27 n n 
C6 N5 6BZ sing 28 n n 
C6 C7 6BZ doub 29 n n 
N5 C3 6BZ sing 30 n n 
C7 N8 6BZ sing 31 n n 
C3 O4 6BZ doub 32 n n 
C3 C2 6BZ sing 33 n n 
N8 C2 6BZ doub 34 n n 
C2 C1 6BZ sing 35 n n 
C14 H1 6BZ sing 36 n n 
C6 H2 6BZ sing 37 n n 
C11 H3 6BZ sing 38 n n 
C7 H4 6BZ sing 39 n n 
C10 H5 6BZ sing 40 n n 
C1 H6 6BZ sing 41 n n 
C1 H7 6BZ sing 42 n n 
C1 H8 6BZ sing 43 n n 
C17 H9 6BZ sing 44 n n 
C19 H10 6BZ sing 45 n n 
C27 H11 6BZ sing 46 n n 
C27 H12 6BZ sing 47 n n 
C28 H13 6BZ sing 48 n n 
C28 H14 6BZ sing 49 n n 
C29 H15 6BZ sing 50 n n 
C29 H16 6BZ sing 51 n n 
N30 H17 6BZ sing 52 n n 
N30 H18 6BZ sing 53 n n 
N31 H20 6BZ sing 54 n n 
C32 H21 6BZ sing 55 n n 
C32 H22 6BZ sing 56 n n 
C32 H23 6BZ sing 57 n n 
#
_atom_sites.entry_id                     5IME 
_atom_sites.fract_transf_matrix[1][1]    0.016534 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004964 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012074 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015846 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 6BZ A 1 601 1 6BZ DRG . 
D 2 6BZ B 1 601 1 6BZ DRG . 
E 3 HOH A 1 701 17 HOH HOH . 
E 3 HOH A 2 702 34 HOH HOH . 
E 3 HOH A 3 703 196 HOH HOH . 
E 3 HOH A 4 704 158 HOH HOH . 
E 3 HOH A 5 705 121 HOH HOH . 
E 3 HOH A 6 706 8 HOH HOH . 
E 3 HOH A 7 707 9 HOH HOH . 
E 3 HOH A 8 708 128 HOH HOH . 
E 3 HOH A 9 709 146 HOH HOH . 
E 3 HOH A 10 710 116 HOH HOH . 
E 3 HOH A 11 711 88 HOH HOH . 
E 3 HOH A 12 712 22 HOH HOH . 
E 3 HOH A 13 713 2 HOH HOH . 
E 3 HOH A 14 714 72 HOH HOH . 
E 3 HOH A 15 715 118 HOH HOH . 
E 3 HOH A 16 716 29 HOH HOH . 
E 3 HOH A 17 717 112 HOH HOH . 
E 3 HOH A 18 718 23 HOH HOH . 
E 3 HOH A 19 719 105 HOH HOH . 
E 3 HOH A 20 720 41 HOH HOH . 
E 3 HOH A 21 721 134 HOH HOH . 
E 3 HOH A 22 722 35 HOH HOH . 
E 3 HOH A 23 723 6 HOH HOH . 
E 3 HOH A 24 724 26 HOH HOH . 
E 3 HOH A 25 725 187 HOH HOH . 
E 3 HOH A 26 726 67 HOH HOH . 
E 3 HOH A 27 727 30 HOH HOH . 
E 3 HOH A 28 728 39 HOH HOH . 
E 3 HOH A 29 729 18 HOH HOH . 
E 3 HOH A 30 730 3 HOH HOH . 
E 3 HOH A 31 731 166 HOH HOH . 
E 3 HOH A 32 732 103 HOH HOH . 
E 3 HOH A 33 733 123 HOH HOH . 
E 3 HOH A 34 734 174 HOH HOH . 
E 3 HOH A 35 735 122 HOH HOH . 
E 3 HOH A 36 736 163 HOH HOH . 
E 3 HOH A 37 737 145 HOH HOH . 
E 3 HOH A 38 738 96 HOH HOH . 
E 3 HOH A 39 739 74 HOH HOH . 
E 3 HOH A 40 740 193 HOH HOH . 
E 3 HOH A 41 741 154 HOH HOH . 
E 3 HOH A 42 742 93 HOH HOH . 
E 3 HOH A 43 743 143 HOH HOH . 
E 3 HOH A 44 744 124 HOH HOH . 
E 3 HOH A 45 745 7 HOH HOH . 
E 3 HOH A 46 746 113 HOH HOH . 
E 3 HOH A 47 747 133 HOH HOH . 
E 3 HOH A 48 748 127 HOH HOH . 
E 3 HOH A 49 749 28 HOH HOH . 
E 3 HOH A 50 750 138 HOH HOH . 
E 3 HOH A 51 751 150 HOH HOH . 
E 3 HOH A 52 752 161 HOH HOH . 
E 3 HOH A 53 753 185 HOH HOH . 
E 3 HOH A 54 754 192 HOH HOH . 
E 3 HOH A 55 755 164 HOH HOH . 
E 3 HOH A 56 756 102 HOH HOH . 
E 3 HOH A 57 757 177 HOH HOH . 
E 3 HOH A 58 758 155 HOH HOH . 
E 3 HOH A 59 759 142 HOH HOH . 
E 3 HOH A 60 760 195 HOH HOH . 
E 3 HOH A 61 761 149 HOH HOH . 
E 3 HOH A 62 762 167 HOH HOH . 
E 3 HOH A 63 763 176 HOH HOH . 
E 3 HOH A 64 764 151 HOH HOH . 
E 3 HOH A 65 765 198 HOH HOH . 
E 3 HOH A 66 766 107 HOH HOH . 
E 3 HOH A 67 767 189 HOH HOH . 
E 3 HOH A 68 768 197 HOH HOH . 
E 3 HOH A 69 769 183 HOH HOH . 
E 3 HOH A 70 770 178 HOH HOH . 
E 3 HOH A 71 771 194 HOH HOH . 
F 3 HOH B 1 701 10 HOH HOH . 
F 3 HOH B 2 702 46 HOH HOH . 
F 3 HOH B 3 703 13 HOH HOH . 
F 3 HOH B 4 704 5 HOH HOH . 
F 3 HOH B 5 705 68 HOH HOH . 
F 3 HOH B 6 706 21 HOH HOH . 
F 3 HOH B 7 707 14 HOH HOH . 
F 3 HOH B 8 708 60 HOH HOH . 
F 3 HOH B 9 709 20 HOH HOH . 
F 3 HOH B 10 710 11 HOH HOH . 
F 3 HOH B 11 711 94 HOH HOH . 
F 3 HOH B 12 712 16 HOH HOH . 
F 3 HOH B 13 713 48 HOH HOH . 
F 3 HOH B 14 714 132 HOH HOH . 
F 3 HOH B 15 715 141 HOH HOH . 
F 3 HOH B 16 716 32 HOH HOH . 
F 3 HOH B 17 717 40 HOH HOH . 
F 3 HOH B 18 718 27 HOH HOH . 
F 3 HOH B 19 719 4 HOH HOH . 
F 3 HOH B 20 720 61 HOH HOH . 
F 3 HOH B 21 721 57 HOH HOH . 
F 3 HOH B 22 722 106 HOH HOH . 
F 3 HOH B 23 723 19 HOH HOH . 
F 3 HOH B 24 724 1 HOH HOH . 
F 3 HOH B 25 725 169 HOH HOH . 
F 3 HOH B 26 726 24 HOH HOH . 
F 3 HOH B 27 727 38 HOH HOH . 
F 3 HOH B 28 728 33 HOH HOH . 
F 3 HOH B 29 729 201 HOH HOH . 
F 3 HOH B 30 730 12 HOH HOH . 
F 3 HOH B 31 731 186 HOH HOH . 
F 3 HOH B 32 732 153 HOH HOH . 
F 3 HOH B 33 733 50 HOH HOH . 
F 3 HOH B 34 734 76 HOH HOH . 
F 3 HOH B 35 735 90 HOH HOH . 
F 3 HOH B 36 736 157 HOH HOH . 
F 3 HOH B 37 737 71 HOH HOH . 
F 3 HOH B 38 738 182 HOH HOH . 
F 3 HOH B 39 739 81 HOH HOH . 
F 3 HOH B 40 740 82 HOH HOH . 
F 3 HOH B 41 741 137 HOH HOH . 
F 3 HOH B 42 742 170 HOH HOH . 
F 3 HOH B 43 743 202 HOH HOH . 
F 3 HOH B 44 744 117 HOH HOH . 
F 3 HOH B 45 745 25 HOH HOH . 
F 3 HOH B 46 746 188 HOH HOH . 
F 3 HOH B 47 747 159 HOH HOH . 
F 3 HOH B 48 748 184 HOH HOH . 
F 3 HOH B 49 749 95 HOH HOH . 
F 3 HOH B 50 750 36 HOH HOH . 
F 3 HOH B 51 751 73 HOH HOH . 
F 3 HOH B 52 752 101 HOH HOH . 
F 3 HOH B 53 753 148 HOH HOH . 
F 3 HOH B 54 754 140 HOH HOH . 
F 3 HOH B 55 755 111 HOH HOH . 
F 3 HOH B 56 756 119 HOH HOH . 
F 3 HOH B 57 757 44 HOH HOH . 
F 3 HOH B 58 758 15 HOH HOH . 
F 3 HOH B 59 759 109 HOH HOH . 
F 3 HOH B 60 760 104 HOH HOH . 
F 3 HOH B 61 761 191 HOH HOH . 
F 3 HOH B 62 762 47 HOH HOH . 
F 3 HOH B 63 763 43 HOH HOH . 
F 3 HOH B 64 764 63 HOH HOH . 
F 3 HOH B 65 765 31 HOH HOH . 
F 3 HOH B 66 766 120 HOH HOH . 
F 3 HOH B 67 767 173 HOH HOH . 
F 3 HOH B 68 768 152 HOH HOH . 
F 3 HOH B 69 769 79 HOH HOH . 
F 3 HOH B 70 770 54 HOH HOH . 
F 3 HOH B 71 771 129 HOH HOH . 
F 3 HOH B 72 772 53 HOH HOH . 
F 3 HOH B 73 773 55 HOH HOH . 
F 3 HOH B 74 774 135 HOH HOH . 
F 3 HOH B 75 775 131 HOH HOH . 
F 3 HOH B 76 776 136 HOH HOH . 
F 3 HOH B 77 777 45 HOH HOH . 
F 3 HOH B 78 778 190 HOH HOH . 
F 3 HOH B 79 779 59 HOH HOH . 
F 3 HOH B 80 780 147 HOH HOH . 
F 3 HOH B 81 781 91 HOH HOH . 
F 3 HOH B 82 782 200 HOH HOH . 
F 3 HOH B 83 783 199 HOH HOH . 
F 3 HOH B 84 784 52 HOH HOH . 
F 3 HOH B 85 785 115 HOH HOH . 
F 3 HOH B 86 786 86 HOH HOH . 
F 3 HOH B 87 787 85 HOH HOH . 
F 3 HOH B 88 788 144 HOH HOH . 
F 3 HOH B 89 789 165 HOH HOH . 
F 3 HOH B 90 790 125 HOH HOH . 
F 3 HOH B 91 791 108 HOH HOH . 
F 3 HOH B 92 792 114 HOH HOH . 
F 3 HOH B 93 793 77 HOH HOH . 
F 3 HOH B 94 794 110 HOH HOH . 
F 3 HOH B 95 795 126 HOH HOH . 
F 3 HOH B 96 796 162 HOH HOH . 
F 3 HOH B 97 797 78 HOH HOH . 
F 3 HOH B 98 798 160 HOH HOH . 
F 3 HOH B 99 799 87 HOH HOH . 
F 3 HOH B 100 800 62 HOH HOH . 
F 3 HOH B 101 801 172 HOH HOH . 
F 3 HOH B 102 802 168 HOH HOH . 
F 3 HOH B 103 803 179 HOH HOH . 
F 3 HOH B 104 804 171 HOH HOH . 
F 3 HOH B 105 805 180 HOH HOH . 
F 3 HOH B 106 806 175 HOH HOH . 
F 3 HOH B 107 807 181 HOH HOH . 
F 3 HOH B 108 808 83 HOH HOH . 
F 3 HOH B 109 809 139 HOH HOH . 
F 3 HOH B 110 810 58 HOH HOH . 
F 3 HOH B 111 811 64 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C14 6BZ . . . D 2 2.616 -14.264 -14.436 1 51.68 ? C14 6BZ 601 B 1 
HETATM 2 C C6 6BZ . . . D 2 0.067 -12.18 -13.727 1 53.76 ? C6 6BZ 601 B 1 
HETATM 3 C C11 6BZ . . . D 2 4.16 -12.192 -15.434 1 49.92 ? C11 6BZ 601 B 1 
HETATM 4 C C7 6BZ . . . D 2 -0.974 -11.941 -12.891 1 56.87 ? C7 6BZ 601 B 1 
HETATM 5 C C9 6BZ . . . D 2 2.317 -12.95 -14.094 1 53.18 ? C9 6BZ 601 B 1 
HETATM 6 C C10 6BZ . . . D 2 3.098 -11.915 -14.598 1 51.41 ? C10 6BZ 601 B 1 
HETATM 7 C C12 6BZ . . . D 2 4.46 -13.509 -15.783 1 50.05 ? C12 6BZ 601 B 1 
HETATM 8 C C13 6BZ . . . D 2 3.678 -14.544 -15.275 1 50.66 ? C13 6BZ 601 B 1 
HETATM 9 C C3 6BZ . . . D 2 1.339 -12.935 -11.922 1 59.68 ? C3 6BZ 601 B 1 
HETATM 10 C C1 6BZ . . . D 2 0.328 -12.943 -9.604 1 61.76 ? C1 6BZ 601 B 1 
HETATM 11 C C2 6BZ . . . D 2 0.233 -12.669 -11.08 1 60.26 ? C2 6BZ 601 B 1 
HETATM 12 O O4 6BZ . . . D 2 2.377 -13.385 -11.466 1 61.35 ? O4 6BZ 601 B 1 
HETATM 13 N N5 6BZ . . . D 2 1.236 -12.683 -13.242 1 55.16 ? N5 6BZ 601 B 1 
HETATM 14 N N8 6BZ . . . D 2 -0.876 -12.188 -11.587 1 59.23 ? N8 6BZ 601 B 1 
HETATM 15 CL CL1 6BZ . . . D 2 4.037 -16.185 -15.697 1 51.61 ? CL1 6BZ 601 B 1 
HETATM 16 C C16 6BZ . . . D 2 5.605 -13.788 -16.682 1 48.73 ? C16 6BZ 601 B 1 
HETATM 17 C C17 6BZ . . . D 2 5.47 -13.659 -18.039 1 45.47 ? C17 6BZ 601 B 1 
HETATM 18 C C18 6BZ . . . D 2 6.589 -13.908 -18.868 1 46.1 ? C18 6BZ 601 B 1 
HETATM 19 C C19 6BZ . . . D 2 6.497 -13.779 -20.263 1 46.18 ? C19 6BZ 601 B 1 
HETATM 20 N N20 6BZ . . . D 2 7.571 -14.008 -20.996 1 46.16 ? N20 6BZ 601 B 1 
HETATM 21 C C21 6BZ . . . D 2 8.722 -14.356 -20.431 1 46.17 ? C21 6BZ 601 B 1 
HETATM 22 N N22 6BZ . . . D 2 8.858 -14.492 -19.12 1 46.8 ? N22 6BZ 601 B 1 
HETATM 23 C C23 6BZ . . . D 2 7.829 -14.278 -18.304 1 47.57 ? C23 6BZ 601 B 1 
HETATM 24 N N24 6BZ . . . D 2 7.954 -14.416 -16.942 1 51.04 ? N24 6BZ 601 B 1 
HETATM 25 C C25 6BZ . . . D 2 6.9 -14.192 -16.13 1 50.93 ? C25 6BZ 601 B 1 
HETATM 26 O O26 6BZ . . . D 2 7.021 -14.324 -14.926 1 52.37 ? O26 6BZ 601 B 1 
HETATM 27 C C27 6BZ . . . D 2 9.237 -14.833 -16.362 1 56.82 ? C27 6BZ 601 B 1 
HETATM 28 C C28 6BZ . . . D 2 10.267 -13.697 -16.396 1 60.27 ? C28 6BZ 601 B 1 
HETATM 29 C C29 6BZ . . . D 2 9.822 -12.554 -15.483 1 65.9 ? C29 6BZ 601 B 1 
HETATM 30 N N30 6BZ . . . D 2 10.936 -11.613 -15.318 1 70.25 ? N30 6BZ 601 B 1 
HETATM 31 N N31 6BZ . . . D 2 9.812 -14.585 -21.243 1 45.6 ? N31 6BZ 601 B 1 
HETATM 32 C C32 6BZ . . . D 2 11.14 -14.767 -20.653 1 45.77 ? C32 6BZ 601 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           32 
#