data_5IO7 # _model_server_result.job_id y0YpLF4x-wVdz1Rn1QdcDQ _model_server_result.datetime_utc '2024-11-19 23:06:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5io7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5IO7 # _exptl.entry_id 5IO7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 170.335 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5IO7 _cell.length_a 53.073 _cell.length_b 53.073 _cell.length_c 111.722 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IO7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 66 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf2 A SG CYS 106 A CYS 106 1_555 A SG CYS 119 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? # _chem_comp.formula 'C12 H26' _chem_comp.formula_weight 170.335 _chem_comp.id D12 _chem_comp.mon_nstd_flag . _chem_comp.name DODECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D12 sing 83 n n C1 H11 D12 sing 84 n n C1 H12 D12 sing 85 n n C1 H13 D12 sing 86 n n C2 C3 D12 sing 87 n n C2 H21 D12 sing 88 n n C2 H22 D12 sing 89 n n C3 C4 D12 sing 90 n n C3 H31 D12 sing 91 n n C3 H32 D12 sing 92 n n C4 C5 D12 sing 93 n n C4 H41 D12 sing 94 n n C4 H42 D12 sing 95 n n C5 C6 D12 sing 96 n n C5 H51 D12 sing 97 n n C5 H52 D12 sing 98 n n C6 C7 D12 sing 99 n n C6 H61 D12 sing 100 n n C6 H62 D12 sing 101 n n C7 C8 D12 sing 102 n n C7 H71 D12 sing 103 n n C7 H72 D12 sing 104 n n C8 C9 D12 sing 105 n n C8 H81 D12 sing 106 n n C8 H82 D12 sing 107 n n C9 C10 D12 sing 108 n n C9 H91 D12 sing 109 n n C9 H92 D12 sing 110 n n C10 C11 D12 sing 111 n n C10 H101 D12 sing 112 n n C10 H102 D12 sing 113 n n C11 C12 D12 sing 114 n n C11 H111 D12 sing 115 n n C11 H112 D12 sing 116 n n C12 H121 D12 sing 117 n n C12 H122 D12 sing 118 n n C12 H123 D12 sing 119 n n # _atom_sites.entry_id 5IO7 _atom_sites.fract_transf_matrix[1][1] 0.018842 _atom_sites.fract_transf_matrix[1][2] 0.010878 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021757 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008951 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 D12 A 1 201 1 D12 D12 . C 3 CL A 1 202 1 CL CL . D 4 HOH A 1 301 6 HOH HOH . D 4 HOH A 2 302 1 HOH HOH . D 4 HOH A 3 303 12 HOH HOH . D 4 HOH A 4 304 5 HOH HOH . D 4 HOH A 5 305 18 HOH HOH . D 4 HOH A 6 306 4 HOH HOH . D 4 HOH A 7 307 13 HOH HOH . D 4 HOH A 8 308 10 HOH HOH . D 4 HOH A 9 309 11 HOH HOH . D 4 HOH A 10 310 21 HOH HOH . D 4 HOH A 11 311 15 HOH HOH . D 4 HOH A 12 312 7 HOH HOH . D 4 HOH A 13 313 9 HOH HOH . D 4 HOH A 14 314 14 HOH HOH . D 4 HOH A 15 315 17 HOH HOH . D 4 HOH A 16 316 19 HOH HOH . D 4 HOH A 17 317 16 HOH HOH . D 4 HOH A 18 318 22 HOH HOH . D 4 HOH A 19 319 8 HOH HOH . D 4 HOH A 20 320 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D12 . . . B 2 -3.978 18.035 16.714 1 15.65 ? C1 D12 201 A 1 HETATM 2 C C2 D12 . . . B 2 -4.337 16.59 17.031 1 18.91 ? C2 D12 201 A 1 HETATM 3 C C3 D12 . . . B 2 -3.254 15.944 17.896 1 28.57 ? C3 D12 201 A 1 HETATM 4 C C4 D12 . . . B 2 -3.532 14.442 17.924 1 33.17 ? C4 D12 201 A 1 HETATM 5 C C5 D12 . . . B 2 -2.493 13.628 18.701 1 33.66 ? C5 D12 201 A 1 HETATM 6 C C6 D12 . . . B 2 -2.615 12.151 18.299 1 22.05 ? C6 D12 201 A 1 HETATM 7 C C7 D12 . . . B 2 -2.997 11.255 19.47 1 28.68 ? C7 D12 201 A 1 HETATM 8 C C8 D12 . . . B 2 -3.467 9.909 18.922 1 42.65 ? C8 D12 201 A 1 HETATM 9 C C9 D12 . . . B 2 -2.977 8.731 19.771 1 44.36 ? C9 D12 201 A 1 HETATM 10 C C10 D12 . . . B 2 -3.93 7.548 19.609 1 42.63 ? C10 D12 201 A 1 HETATM 11 C C11 D12 . . . B 2 -3.169 6.277 19.934 1 35.22 ? C11 D12 201 A 1 HETATM 12 C C12 D12 . . . B 2 -2.121 6.112 18.841 1 33.75 ? C12 D12 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #