data_5IO8 # _model_server_result.job_id uLnmrL5Eq9fHKQYfvloCuw _model_server_result.datetime_utc '2024-10-10 06:31:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5io8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":211}' # _entry.id 5IO8 # _exptl.entry_id 5IO8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IO8 _cell.length_a 60.115 _cell.length_b 60.277 _cell.length_c 62.603 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IO8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 41 A THR 41 1_555 K NA NA . A NA 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.059 ? metalc ? metalc2 A OG SER 78 A SER 78 1_555 J NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc3 K NA NA . A NA 209 3_656 B OG1 THR 41 B THR 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.177 ? metalc ? metalc4 K NA NA . A NA 209 1_555 Z O HOH . B HOH 328 4_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc5 M NA NA . A NA 211 1_555 Y O HOH . A HOH 335 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5IO8 _atom_sites.fract_transf_matrix[1][1] 0.016635 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01659 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015974 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IOD A 1 201 1 IOD IOD . D 2 IOD A 1 202 4 IOD IOD . E 2 IOD A 1 203 7 IOD IOD . F 2 IOD A 1 204 8 IOD IOD . G 2 IOD A 1 205 10 IOD IOD . H 2 IOD A 1 206 12 IOD IOD . I 2 IOD A 1 207 14 IOD IOD . J 3 NA A 1 208 2 NA NA . K 3 NA A 1 209 3 NA NA . L 3 NA A 1 210 4 NA NA . M 3 NA A 1 211 5 NA NA . N 4 PO4 A 1 212 1 PO4 PO4 . O 4 PO4 A 1 213 2 PO4 PO4 . P 4 PO4 A 1 214 3 PO4 PO4 . Q 2 IOD B 1 201 2 IOD IOD . R 2 IOD B 1 202 3 IOD IOD . S 2 IOD B 1 203 5 IOD IOD . T 2 IOD B 1 204 6 IOD IOD . U 2 IOD B 1 205 9 IOD IOD . V 2 IOD B 1 206 11 IOD IOD . W 2 IOD B 1 207 13 IOD IOD . X 3 NA B 1 208 1 NA NA . Y 5 HOH A 1 301 20 HOH HOH . Y 5 HOH A 2 302 64 HOH HOH . Y 5 HOH A 3 303 16 HOH HOH . Y 5 HOH A 4 304 26 HOH HOH . Y 5 HOH A 5 305 53 HOH HOH . Y 5 HOH A 6 306 22 HOH HOH . Y 5 HOH A 7 307 11 HOH HOH . Y 5 HOH A 8 308 52 HOH HOH . Y 5 HOH A 9 309 29 HOH HOH . Y 5 HOH A 10 310 51 HOH HOH . Y 5 HOH A 11 311 77 HOH HOH . Y 5 HOH A 12 312 63 HOH HOH . Y 5 HOH A 13 313 14 HOH HOH . Y 5 HOH A 14 314 41 HOH HOH . Y 5 HOH A 15 315 3 HOH HOH . Y 5 HOH A 16 316 23 HOH HOH . Y 5 HOH A 17 317 12 HOH HOH . Y 5 HOH A 18 318 19 HOH HOH . Y 5 HOH A 19 319 30 HOH HOH . Y 5 HOH A 20 320 57 HOH HOH . Y 5 HOH A 21 321 25 HOH HOH . Y 5 HOH A 22 322 48 HOH HOH . Y 5 HOH A 23 323 38 HOH HOH . Y 5 HOH A 24 324 72 HOH HOH . Y 5 HOH A 25 325 60 HOH HOH . Y 5 HOH A 26 326 2 HOH HOH . Y 5 HOH A 27 327 49 HOH HOH . Y 5 HOH A 28 328 8 HOH HOH . Y 5 HOH A 29 329 47 HOH HOH . Y 5 HOH A 30 330 32 HOH HOH . Y 5 HOH A 31 331 62 HOH HOH . Y 5 HOH A 32 332 42 HOH HOH . Y 5 HOH A 33 333 69 HOH HOH . Y 5 HOH A 34 334 15 HOH HOH . Y 5 HOH A 35 335 68 HOH HOH . Y 5 HOH A 36 336 70 HOH HOH . Y 5 HOH A 37 337 76 HOH HOH . Y 5 HOH A 38 338 27 HOH HOH . Y 5 HOH A 39 339 21 HOH HOH . Y 5 HOH A 40 340 34 HOH HOH . Y 5 HOH A 41 341 18 HOH HOH . Y 5 HOH A 42 342 28 HOH HOH . Z 5 HOH B 1 301 73 HOH HOH . Z 5 HOH B 2 302 31 HOH HOH . Z 5 HOH B 3 303 5 HOH HOH . Z 5 HOH B 4 304 66 HOH HOH . Z 5 HOH B 5 305 74 HOH HOH . Z 5 HOH B 6 306 1 HOH HOH . Z 5 HOH B 7 307 33 HOH HOH . Z 5 HOH B 8 308 50 HOH HOH . Z 5 HOH B 9 309 39 HOH HOH . Z 5 HOH B 10 310 40 HOH HOH . Z 5 HOH B 11 311 9 HOH HOH . Z 5 HOH B 12 312 58 HOH HOH . Z 5 HOH B 13 313 13 HOH HOH . Z 5 HOH B 14 314 45 HOH HOH . Z 5 HOH B 15 315 61 HOH HOH . Z 5 HOH B 16 316 6 HOH HOH . Z 5 HOH B 17 317 7 HOH HOH . Z 5 HOH B 18 318 4 HOH HOH . Z 5 HOH B 19 319 44 HOH HOH . Z 5 HOH B 20 320 10 HOH HOH . Z 5 HOH B 21 321 24 HOH HOH . Z 5 HOH B 22 322 46 HOH HOH . Z 5 HOH B 23 323 75 HOH HOH . Z 5 HOH B 24 324 71 HOH HOH . Z 5 HOH B 25 325 35 HOH HOH . Z 5 HOH B 26 326 43 HOH HOH . Z 5 HOH B 27 327 59 HOH HOH . Z 5 HOH B 28 328 56 HOH HOH . Z 5 HOH B 29 329 67 HOH HOH . Z 5 HOH B 30 330 36 HOH HOH . Z 5 HOH B 31 331 37 HOH HOH . Z 5 HOH B 32 332 55 HOH HOH . Z 5 HOH B 33 333 78 HOH HOH . Z 5 HOH B 34 334 65 HOH HOH . Z 5 HOH B 35 335 17 HOH HOH . Z 5 HOH B 36 336 54 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 3 _atom_site.Cartn_x 26.041 _atom_site.Cartn_y 5.269 _atom_site.Cartn_z 12.518 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 72.38 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 211 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #