data_5IOR # _model_server_result.job_id zNgUapLuTyT58lFNby7TNQ _model_server_result.datetime_utc '2024-11-24 12:10:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ior # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5IOR # _exptl.entry_id 5IOR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IOR _cell.length_a 109.679 _cell.length_b 109.679 _cell.length_c 119.864 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IOR _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 116 n n PA O2A FAD sing 117 n n PA O5B FAD sing 118 n n PA O3P FAD sing 119 n n O2A HOA2 FAD sing 120 n n O5B C5B FAD sing 121 n n C5B C4B FAD sing 122 n n C5B H51A FAD sing 123 n n C5B H52A FAD sing 124 n n C4B O4B FAD sing 125 n n C4B C3B FAD sing 126 n n C4B H4B FAD sing 127 n n O4B C1B FAD sing 128 n n C3B O3B FAD sing 129 n n C3B C2B FAD sing 130 n n C3B H3B FAD sing 131 n n O3B HO3A FAD sing 132 n n C2B O2B FAD sing 133 n n C2B C1B FAD sing 134 n n C2B H2B FAD sing 135 n n O2B HO2A FAD sing 136 n n C1B N9A FAD sing 137 n n C1B H1B FAD sing 138 n n N9A C8A FAD sing 139 n y N9A C4A FAD sing 140 n y C8A N7A FAD doub 141 n y C8A H8A FAD sing 142 n n N7A C5A FAD sing 143 n y C5A C6A FAD sing 144 n y C5A C4A FAD doub 145 n y C6A N6A FAD sing 146 n n C6A N1A FAD doub 147 n y N6A H61A FAD sing 148 n n N6A H62A FAD sing 149 n n N1A C2A FAD sing 150 n y C2A N3A FAD doub 151 n y C2A H2A FAD sing 152 n n N3A C4A FAD sing 153 n y N1 C2 FAD sing 154 n n N1 C10 FAD doub 155 n n C2 O2 FAD doub 156 n n C2 N3 FAD sing 157 n n N3 C4 FAD sing 158 n n N3 HN3 FAD sing 159 n n C4 O4 FAD doub 160 n n C4 C4X FAD sing 161 n n C4X N5 FAD doub 162 n n C4X C10 FAD sing 163 n n N5 C5X FAD sing 164 n n C5X C6 FAD doub 165 n y C5X C9A FAD sing 166 n y C6 C7 FAD sing 167 n y C6 H6 FAD sing 168 n n C7 C7M FAD sing 169 n n C7 C8 FAD doub 170 n y C7M HM71 FAD sing 171 n n C7M HM72 FAD sing 172 n n C7M HM73 FAD sing 173 n n C8 C8M FAD sing 174 n n C8 C9 FAD sing 175 n y C8M HM81 FAD sing 176 n n C8M HM82 FAD sing 177 n n C8M HM83 FAD sing 178 n n C9 C9A FAD doub 179 n y C9 H9 FAD sing 180 n n C9A N10 FAD sing 181 n n N10 C10 FAD sing 182 n n N10 C1' FAD sing 183 n n C1' C2' FAD sing 184 n n C1' "H1'1" FAD sing 185 n n C1' "H1'2" FAD sing 186 n n C2' O2' FAD sing 187 n n C2' C3' FAD sing 188 n n C2' H2' FAD sing 189 n n O2' HO2' FAD sing 190 n n C3' O3' FAD sing 191 n n C3' C4' FAD sing 192 n n C3' H3' FAD sing 193 n n O3' HO3' FAD sing 194 n n C4' O4' FAD sing 195 n n C4' C5' FAD sing 196 n n C4' H4' FAD sing 197 n n O4' HO4' FAD sing 198 n n C5' O5' FAD sing 199 n n C5' "H5'1" FAD sing 200 n n C5' "H5'2" FAD sing 201 n n O5' P FAD sing 202 n n P O1P FAD doub 203 n n P O2P FAD sing 204 n n P O3P FAD sing 205 n n O2P HOP2 FAD sing 206 n n # _atom_sites.entry_id 5IOR _atom_sites.fract_transf_matrix[1][1] 0.009118 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009118 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008343 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 301 315 FAD FAD . C 3 DUS A 1 302 1 DUS DUS . D 4 RBF A 1 303 1 RBF RBF . E 5 HOH A 1 401 48 HOH HOH . E 5 HOH A 2 402 64 HOH HOH . E 5 HOH A 3 403 36 HOH HOH . E 5 HOH A 4 404 22 HOH HOH . E 5 HOH A 5 405 57 HOH HOH . E 5 HOH A 6 406 34 HOH HOH . E 5 HOH A 7 407 8 HOH HOH . E 5 HOH A 8 408 81 HOH HOH . E 5 HOH A 9 409 33 HOH HOH . E 5 HOH A 10 410 56 HOH HOH . E 5 HOH A 11 411 18 HOH HOH . E 5 HOH A 12 412 86 HOH HOH . E 5 HOH A 13 413 38 HOH HOH . E 5 HOH A 14 414 23 HOH HOH . E 5 HOH A 15 415 7 HOH HOH . E 5 HOH A 16 416 102 HOH HOH . E 5 HOH A 17 417 9 HOH HOH . E 5 HOH A 18 418 99 HOH HOH . E 5 HOH A 19 419 3 HOH HOH . E 5 HOH A 20 420 49 HOH HOH . E 5 HOH A 21 421 32 HOH HOH . E 5 HOH A 22 422 103 HOH HOH . E 5 HOH A 23 423 4 HOH HOH . E 5 HOH A 24 424 80 HOH HOH . E 5 HOH A 25 425 44 HOH HOH . E 5 HOH A 26 426 20 HOH HOH . E 5 HOH A 27 427 19 HOH HOH . E 5 HOH A 28 428 84 HOH HOH . E 5 HOH A 29 429 65 HOH HOH . E 5 HOH A 30 430 12 HOH HOH . E 5 HOH A 31 431 108 HOH HOH . E 5 HOH A 32 432 73 HOH HOH . E 5 HOH A 33 433 30 HOH HOH . E 5 HOH A 34 434 82 HOH HOH . E 5 HOH A 35 435 16 HOH HOH . E 5 HOH A 36 436 87 HOH HOH . E 5 HOH A 37 437 79 HOH HOH . E 5 HOH A 38 438 78 HOH HOH . E 5 HOH A 39 439 43 HOH HOH . E 5 HOH A 40 440 62 HOH HOH . E 5 HOH A 41 441 42 HOH HOH . E 5 HOH A 42 442 106 HOH HOH . E 5 HOH A 43 443 51 HOH HOH . E 5 HOH A 44 444 29 HOH HOH . E 5 HOH A 45 445 47 HOH HOH . E 5 HOH A 46 446 54 HOH HOH . E 5 HOH A 47 447 71 HOH HOH . E 5 HOH A 48 448 93 HOH HOH . E 5 HOH A 49 449 11 HOH HOH . E 5 HOH A 50 450 83 HOH HOH . E 5 HOH A 51 451 59 HOH HOH . E 5 HOH A 52 452 94 HOH HOH . E 5 HOH A 53 453 45 HOH HOH . E 5 HOH A 54 454 89 HOH HOH . E 5 HOH A 55 455 6 HOH HOH . E 5 HOH A 56 456 40 HOH HOH . E 5 HOH A 57 457 13 HOH HOH . E 5 HOH A 58 458 24 HOH HOH . E 5 HOH A 59 459 2 HOH HOH . E 5 HOH A 60 460 10 HOH HOH . E 5 HOH A 61 461 35 HOH HOH . E 5 HOH A 62 462 14 HOH HOH . E 5 HOH A 63 463 25 HOH HOH . E 5 HOH A 64 464 21 HOH HOH . E 5 HOH A 65 465 28 HOH HOH . E 5 HOH A 66 466 26 HOH HOH . E 5 HOH A 67 467 5 HOH HOH . E 5 HOH A 68 468 37 HOH HOH . E 5 HOH A 69 469 53 HOH HOH . E 5 HOH A 70 470 90 HOH HOH . E 5 HOH A 71 471 92 HOH HOH . E 5 HOH A 72 472 70 HOH HOH . E 5 HOH A 73 473 39 HOH HOH . E 5 HOH A 74 474 105 HOH HOH . E 5 HOH A 75 475 55 HOH HOH . E 5 HOH A 76 476 67 HOH HOH . E 5 HOH A 77 477 66 HOH HOH . E 5 HOH A 78 478 41 HOH HOH . E 5 HOH A 79 479 107 HOH HOH . E 5 HOH A 80 480 50 HOH HOH . E 5 HOH A 81 481 27 HOH HOH . E 5 HOH A 82 482 74 HOH HOH . E 5 HOH A 83 483 17 HOH HOH . E 5 HOH A 84 484 63 HOH HOH . E 5 HOH A 85 485 31 HOH HOH . E 5 HOH A 86 486 69 HOH HOH . E 5 HOH A 87 487 15 HOH HOH . E 5 HOH A 88 488 52 HOH HOH . E 5 HOH A 89 489 91 HOH HOH . E 5 HOH A 90 490 46 HOH HOH . E 5 HOH A 91 491 68 HOH HOH . E 5 HOH A 92 492 97 HOH HOH . E 5 HOH A 93 493 98 HOH HOH . E 5 HOH A 94 494 58 HOH HOH . E 5 HOH A 95 495 95 HOH HOH . E 5 HOH A 96 496 104 HOH HOH . E 5 HOH A 97 497 96 HOH HOH . E 5 HOH A 98 498 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 -0.401 8.586 -0.76 1 23.04 ? PA FAD 301 A 1 HETATM 2 O O1A FAD . . . B 2 -0.15 8.333 -2.219 1 21.54 ? O1A FAD 301 A 1 HETATM 3 O O2A FAD . . . B 2 0.695 8.258 0.231 1 20.99 ? O2A FAD 301 A 1 HETATM 4 O O5B FAD . . . B 2 -1.707 7.805 -0.26 1 21.4 ? O5B FAD 301 A 1 HETATM 5 C C5B FAD . . . B 2 -2.818 7.732 -1.14 1 20.82 ? C5B FAD 301 A 1 HETATM 6 C C4B FAD . . . B 2 -3.998 7.313 -0.303 1 21.67 ? C4B FAD 301 A 1 HETATM 7 O O4B FAD . . . B 2 -3.764 5.976 0.169 1 21.82 ? O4B FAD 301 A 1 HETATM 8 C C3B FAD . . . B 2 -4.163 8.177 0.935 1 22.72 ? C3B FAD 301 A 1 HETATM 9 O O3B FAD . . . B 2 -4.998 9.303 0.712 1 25.24 ? O3B FAD 301 A 1 HETATM 10 C C2B FAD . . . B 2 -4.778 7.235 1.924 1 23.19 ? C2B FAD 301 A 1 HETATM 11 O O2B FAD . . . B 2 -6.181 7.06 1.645 1 23.8 ? O2B FAD 301 A 1 HETATM 12 C C1B FAD . . . B 2 -4.122 5.933 1.541 1 22.74 ? C1B FAD 301 A 1 HETATM 13 N N9A FAD . . . B 2 -2.945 5.476 2.279 1 23.43 ? N9A FAD 301 A 1 HETATM 14 C C8A FAD . . . B 2 -1.733 5.165 1.766 1 22.49 ? C8A FAD 301 A 1 HETATM 15 N N7A FAD . . . B 2 -0.958 4.673 2.741 1 21.31 ? N7A FAD 301 A 1 HETATM 16 C C5A FAD . . . B 2 -1.7 4.67 3.861 1 21.6 ? C5A FAD 301 A 1 HETATM 17 C C6A FAD . . . B 2 -1.513 4.26 5.245 1 20.42 ? C6A FAD 301 A 1 HETATM 18 N N6A FAD . . . B 2 -0.327 3.782 5.591 1 20.05 ? N6A FAD 301 A 1 HETATM 19 N N1A FAD . . . B 2 -2.519 4.408 6.125 1 21.77 ? N1A FAD 301 A 1 HETATM 20 C C2A FAD . . . B 2 -3.704 4.912 5.749 1 22.31 ? C2A FAD 301 A 1 HETATM 21 N N3A FAD . . . B 2 -3.944 5.297 4.501 1 21.39 ? N3A FAD 301 A 1 HETATM 22 C C4A FAD . . . B 2 -3.003 5.178 3.552 1 21.63 ? C4A FAD 301 A 1 HETATM 23 N N1 FAD . . . B 2 3.93 16.064 5.312 1 23.08 ? N1 FAD 301 A 1 HETATM 24 C C2 FAD . . . B 2 4.675 16.234 6.432 1 24.23 ? C2 FAD 301 A 1 HETATM 25 O O2 FAD . . . B 2 5.32 15.254 6.872 1 23.35 ? O2 FAD 301 A 1 HETATM 26 N N3 FAD . . . B 2 4.779 17.421 7.064 1 23.33 ? N3 FAD 301 A 1 HETATM 27 C C4 FAD . . . B 2 4.13 18.523 6.654 1 25.05 ? C4 FAD 301 A 1 HETATM 28 O O4 FAD . . . B 2 4.238 19.625 7.252 1 25.06 ? O4 FAD 301 A 1 HETATM 29 C C4X FAD . . . B 2 3.302 18.428 5.451 1 23.06 ? C4X FAD 301 A 1 HETATM 30 N N5 FAD . . . B 2 2.642 19.494 4.959 1 23.87 ? N5 FAD 301 A 1 HETATM 31 C C5X FAD . . . B 2 1.904 19.368 3.821 1 23.7 ? C5X FAD 301 A 1 HETATM 32 C C6 FAD . . . B 2 1.23 20.458 3.301 1 23.14 ? C6 FAD 301 A 1 HETATM 33 C C7 FAD . . . B 2 0.456 20.326 2.146 1 24.42 ? C7 FAD 301 A 1 HETATM 34 C C7M FAD . . . B 2 -0.275 21.519 1.595 1 25.79 ? C7M FAD 301 A 1 HETATM 35 C C8 FAD . . . B 2 0.373 19.026 1.432 1 23.84 ? C8 FAD 301 A 1 HETATM 36 C C8M FAD . . . B 2 -0.435 18.868 0.17 1 25.15 ? C8M FAD 301 A 1 HETATM 37 C C9 FAD . . . B 2 1.054 17.939 1.936 1 22.96 ? C9 FAD 301 A 1 HETATM 38 C C9A FAD . . . B 2 1.817 18.058 3.106 1 23.13 ? C9A FAD 301 A 1 HETATM 39 N N10 FAD . . . B 2 2.523 16.954 3.616 1 23.69 ? N10 FAD 301 A 1 HETATM 40 C C10 FAD . . . B 2 3.264 17.11 4.785 1 22.94 ? C10 FAD 301 A 1 HETATM 41 C C1' FAD . . . B 2 2.474 15.637 2.956 1 22.67 ? C1' FAD 301 A 1 HETATM 42 C C2' FAD . . . B 2 1.19 14.893 3.317 1 23.07 ? C2' FAD 301 A 1 HETATM 43 O O2' FAD . . . B 2 1.138 14.65 4.73 1 23.38 ? O2' FAD 301 A 1 HETATM 44 C C3' FAD . . . B 2 1.084 13.574 2.53 1 22.4 ? C3' FAD 301 A 1 HETATM 45 O O3' FAD . . . B 2 2.239 12.783 2.788 1 21.77 ? O3' FAD 301 A 1 HETATM 46 C C4' FAD . . . B 2 0.982 13.792 1.02 1 23.35 ? C4' FAD 301 A 1 HETATM 47 O O4' FAD . . . B 2 0.074 14.881 0.768 1 22.62 ? O4' FAD 301 A 1 HETATM 48 C C5' FAD . . . B 2 0.541 12.538 0.267 1 22.9 ? C5' FAD 301 A 1 HETATM 49 O O5' FAD . . . B 2 -0.839 12.299 0.548 1 24.02 ? O5' FAD 301 A 1 HETATM 50 P P FAD . . . B 2 -1.464 10.821 0.711 1 22.76 ? P FAD 301 A 1 HETATM 51 O O1P FAD . . . B 2 -1.029 10.184 2 1 21.82 ? O1P FAD 301 A 1 HETATM 52 O O2P FAD . . . B 2 -2.949 11.027 0.485 1 23.6 ? O2P FAD 301 A 1 HETATM 53 O O3P FAD . . . B 2 -0.803 10.133 -0.6 1 22.39 ? O3P FAD 301 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 53 #