data_5IOY # _model_server_result.job_id k7S6FUUE0Q-vBnCBV_dyyQ _model_server_result.datetime_utc '2025-01-10 20:08:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ioy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 5IOY # _exptl.entry_id 5IOY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 196.289 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(cyclopentylmethyl)pyrrolidine-1-carboxamide _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IOY _cell.length_a 121.35 _cell.length_b 121.35 _cell.length_c 33.85 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IOY _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 E N N # _chem_comp.formula 'C11 H20 N2 O' _chem_comp.formula_weight 196.289 _chem_comp.id 6C5 _chem_comp.mon_nstd_flag . _chem_comp.name N-(cyclopentylmethyl)pyrrolidine-1-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C4 6C5 doub 1 n n C1 C 6C5 sing 2 n n C1 N 6C5 sing 3 n n C C3 6C5 sing 4 n n C4 N 6C5 sing 5 n n C4 N1 6C5 sing 6 n n N C2 6C5 sing 7 n n C5 N1 6C5 sing 8 n n C5 C6 6C5 sing 9 n n C3 C2 6C5 sing 10 n n C7 C6 6C5 sing 11 n n C7 C8 6C5 sing 12 n n C6 C10 6C5 sing 13 n n C8 C9 6C5 sing 14 n n C10 C9 6C5 sing 15 n n C1 H1 6C5 sing 16 n n C1 H2 6C5 sing 17 n n C2 H3 6C5 sing 18 n n C2 H4 6C5 sing 19 n n C3 H5 6C5 sing 20 n n C3 H6 6C5 sing 21 n n C5 H7 6C5 sing 22 n n C5 H8 6C5 sing 23 n n C6 H9 6C5 sing 24 n n C7 H10 6C5 sing 25 n n C7 H11 6C5 sing 26 n n N1 H12 6C5 sing 27 n n C8 H13 6C5 sing 28 n n C8 H14 6C5 sing 29 n n C9 H15 6C5 sing 30 n n C9 H16 6C5 sing 31 n n C10 H17 6C5 sing 32 n n C10 H18 6C5 sing 33 n n C H19 6C5 sing 34 n n C H20 6C5 sing 35 n n # _atom_sites.entry_id 5IOY _atom_sites.fract_transf_matrix[1][1] 0.008241 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008241 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029542 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6C5 A 1 301 1 6C5 091 . C 2 6C5 A 1 302 1 6C5 091 . D 3 SO4 A 1 303 1 SO4 SO4 . E 2 6C5 A 1 304 1 6C5 091 . F 4 HOH A 1 401 34 HOH HOH . F 4 HOH A 2 402 36 HOH HOH . F 4 HOH A 3 403 12 HOH HOH . F 4 HOH A 4 404 45 HOH HOH . F 4 HOH A 5 405 23 HOH HOH . F 4 HOH A 6 406 4 HOH HOH . F 4 HOH A 7 407 32 HOH HOH . F 4 HOH A 8 408 30 HOH HOH . F 4 HOH A 9 409 21 HOH HOH . F 4 HOH A 10 410 43 HOH HOH . F 4 HOH A 11 411 19 HOH HOH . F 4 HOH A 12 412 9 HOH HOH . F 4 HOH A 13 413 1 HOH HOH . F 4 HOH A 14 414 46 HOH HOH . F 4 HOH A 15 415 5 HOH HOH . F 4 HOH A 16 416 13 HOH HOH . F 4 HOH A 17 417 18 HOH HOH . F 4 HOH A 18 418 35 HOH HOH . F 4 HOH A 19 419 38 HOH HOH . F 4 HOH A 20 420 14 HOH HOH . F 4 HOH A 21 421 8 HOH HOH . F 4 HOH A 22 422 2 HOH HOH . F 4 HOH A 23 423 40 HOH HOH . F 4 HOH A 24 424 15 HOH HOH . F 4 HOH A 25 425 24 HOH HOH . F 4 HOH A 26 426 28 HOH HOH . F 4 HOH A 27 427 6 HOH HOH . F 4 HOH A 28 428 31 HOH HOH . F 4 HOH A 29 429 29 HOH HOH . F 4 HOH A 30 430 11 HOH HOH . F 4 HOH A 31 431 25 HOH HOH . F 4 HOH A 32 432 41 HOH HOH . F 4 HOH A 33 433 7 HOH HOH . F 4 HOH A 34 434 16 HOH HOH . F 4 HOH A 35 435 44 HOH HOH . F 4 HOH A 36 436 17 HOH HOH . F 4 HOH A 37 437 42 HOH HOH . F 4 HOH A 38 438 22 HOH HOH . F 4 HOH A 39 439 33 HOH HOH . F 4 HOH A 40 440 10 HOH HOH . F 4 HOH A 41 441 37 HOH HOH . F 4 HOH A 42 442 20 HOH HOH . F 4 HOH A 43 443 26 HOH HOH . F 4 HOH A 44 444 39 HOH HOH . F 4 HOH A 45 445 3 HOH HOH . F 4 HOH A 46 446 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 6C5 . . . E 2 0.132 22.839 5.543 1 31.16 ? C1 6C5 304 A 1 HETATM 2 C C2 6C5 . . . E 2 1.987 22.113 4.027 1 24.25 ? C2 6C5 304 A 1 HETATM 3 C C3 6C5 . . . E 2 0.99 20.981 4.107 1 34.46 ? C3 6C5 304 A 1 HETATM 4 C C4 6C5 . . . E 2 1.855 24.397 4.901 1 34.16 ? C4 6C5 304 A 1 HETATM 5 C C5 6C5 . . . E 2 3.829 25.884 4.541 1 31.11 ? C5 6C5 304 A 1 HETATM 6 C C6 6C5 . . . E 2 3.743 26.82 3.304 1 29.31 ? C6 6C5 304 A 1 HETATM 7 C C7 6C5 . . . E 2 2.252 27.244 3.189 1 35.45 ? C7 6C5 304 A 1 HETATM 8 N N1 6C5 . . . E 2 3.039 24.674 4.287 1 30.44 ? N1 6C5 304 A 1 HETATM 9 C C8 6C5 . . . E 2 2.12 28.491 4.055 1 34.76 ? C8 6C5 304 A 1 HETATM 10 C C9 6C5 . . . E 2 3.54 29.029 4.286 1 37.15 ? C9 6C5 304 A 1 HETATM 11 C C10 6C5 . . . E 2 4.567 28.043 3.669 1 32.51 ? C10 6C5 304 A 1 HETATM 12 O O 6C5 . . . E 2 1.307 25.243 5.66 1 30.73 ? O 6C5 304 A 1 HETATM 13 N N 6C5 . . . E 2 1.331 23.194 4.785 1 29.6 ? N 6C5 304 A 1 HETATM 14 C C 6C5 . . . E 2 0.023 21.339 5.247 1 32.08 ? C 6C5 304 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #