data_5IOZ # _model_server_result.job_id FcuSeY8hV5SHv08Ur7fkIw _model_server_result.datetime_utc '2025-01-26 20:44:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ioz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5IOZ # _exptl.entry_id 5IOZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.301 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(cyclopentylmethyl)cyclopentanecarboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IOZ _cell.length_a 121.83 _cell.length_b 121.83 _cell.length_c 33.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IOZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H21 N O' _chem_comp.formula_weight 195.301 _chem_comp.id 6C4 _chem_comp.mon_nstd_flag . _chem_comp.name N-(cyclopentylmethyl)cyclopentanecarboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C8 6C4 sing 1 n n C9 C10 6C4 sing 2 n n C8 C7 6C4 sing 3 n n C10 C11 6C4 sing 4 n n C3 C4 6C4 sing 5 n n C3 C2 6C4 sing 6 n n C11 C7 6C4 sing 7 n n C7 C6 6C4 sing 8 n n C4 C 6C4 sing 9 n n N C6 6C4 sing 10 n n N C5 6C4 sing 11 n n C2 C5 6C4 sing 12 n n C2 C1 6C4 sing 13 n n C5 O 6C4 doub 14 n n C C1 6C4 sing 15 n n C2 H1 6C4 sing 16 n n C4 H2 6C4 sing 17 n n C4 H3 6C4 sing 18 n n C6 H4 6C4 sing 19 n n C6 H5 6C4 sing 20 n n C7 H6 6C4 sing 21 n n C9 H7 6C4 sing 22 n n C9 H8 6C4 sing 23 n n C11 H9 6C4 sing 24 n n C11 H10 6C4 sing 25 n n C1 H11 6C4 sing 26 n n C1 H12 6C4 sing 27 n n C3 H13 6C4 sing 28 n n C3 H14 6C4 sing 29 n n C H15 6C4 sing 30 n n C H16 6C4 sing 31 n n N H17 6C4 sing 32 n n C10 H18 6C4 sing 33 n n C10 H19 6C4 sing 34 n n C8 H20 6C4 sing 35 n n C8 H21 6C4 sing 36 n n # _atom_sites.entry_id 5IOZ _atom_sites.fract_transf_matrix[1][1] 0.008208 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008208 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029586 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6C4 A 1 301 1 6C4 107 . C 3 HOH A 1 401 5 HOH HOH . C 3 HOH A 2 402 10 HOH HOH . C 3 HOH A 3 403 11 HOH HOH . C 3 HOH A 4 404 21 HOH HOH . C 3 HOH A 5 405 24 HOH HOH . C 3 HOH A 6 406 6 HOH HOH . C 3 HOH A 7 407 13 HOH HOH . C 3 HOH A 8 408 12 HOH HOH . C 3 HOH A 9 409 23 HOH HOH . C 3 HOH A 10 410 9 HOH HOH . C 3 HOH A 11 411 19 HOH HOH . C 3 HOH A 12 412 1 HOH HOH . C 3 HOH A 13 413 4 HOH HOH . C 3 HOH A 14 414 7 HOH HOH . C 3 HOH A 15 415 18 HOH HOH . C 3 HOH A 16 416 8 HOH HOH . C 3 HOH A 17 417 16 HOH HOH . C 3 HOH A 18 418 15 HOH HOH . C 3 HOH A 19 419 3 HOH HOH . C 3 HOH A 20 420 14 HOH HOH . C 3 HOH A 21 421 17 HOH HOH . C 3 HOH A 22 422 22 HOH HOH . C 3 HOH A 23 423 2 HOH HOH . C 3 HOH A 24 424 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 6C4 . . . B 2 28.801 15.652 -1.87 1 26.37 ? C2 6C4 301 A 1 HETATM 2 C C4 6C4 . . . B 2 30.88 16.617 -2.686 1 26.8 ? C4 6C4 301 A 1 HETATM 3 C C5 6C4 . . . B 2 28.345 14.281 -1.477 1 24.97 ? C5 6C4 301 A 1 HETATM 4 C C6 6C4 . . . B 2 27.316 12.183 -2.148 1 23.68 ? C6 6C4 301 A 1 HETATM 5 C C7 6C4 . . . B 2 27.802 10.979 -2.906 1 28.74 ? C7 6C4 301 A 1 HETATM 6 C C9 6C4 . . . B 2 28.45 9.839 -4.836 1 26.28 ? C9 6C4 301 A 1 HETATM 7 C C11 6C4 . . . B 2 26.905 9.734 -2.945 1 30.37 ? C11 6C4 301 A 1 HETATM 8 O O 6C4 . . . B 2 28.245 13.906 -0.285 1 24.58 ? O 6C4 301 A 1 HETATM 9 C C1 6C4 . . . B 2 29.448 16.354 -0.684 1 25.27 ? C1 6C4 301 A 1 HETATM 10 C C3 6C4 . . . B 2 29.886 15.478 -2.953 1 27.88 ? C3 6C4 301 A 1 HETATM 11 C C 6C4 . . . B 2 30.436 17.27 -1.37 1 27.51 ? C 6C4 301 A 1 HETATM 12 N N 6C4 . . . B 2 28.035 13.453 -2.482 1 21.05 ? N 6C4 301 A 1 HETATM 13 C C10 6C4 . . . B 2 27.467 8.933 -4.111 1 28.02 ? C10 6C4 301 A 1 HETATM 14 C C8 6C4 . . . B 2 28.221 11.249 -4.348 1 28.08 ? C8 6C4 301 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 14 #