data_5IP6 # _model_server_result.job_id LqYU3agtt58BPl5JEkBbJA _model_server_result.datetime_utc '2025-01-10 22:58:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ip6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5IP6 # _exptl.entry_id 5IP6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 198.262 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{[(3S)-oxolan-3-yl]methyl}pyrrolidine-1-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IP6 _cell.length_a 120.81 _cell.length_b 120.81 _cell.length_c 33.736 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IP6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 33.736 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H18 N2 O2' _chem_comp.formula_weight 198.262 _chem_comp.id 6C9 _chem_comp.mon_nstd_flag . _chem_comp.name N-{[(3S)-oxolan-3-yl]methyl}pyrrolidine-1-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C2 6C9 sing 1 n n O C3 6C9 sing 2 n n C2 C1 6C9 sing 3 n n C3 C 6C9 sing 4 n n C1 C 6C9 sing 5 n n C1 C4 6C9 sing 6 n n C9 C8 6C9 sing 7 n n C9 N1 6C9 sing 8 n n C8 C7 6C9 sing 9 n n N C4 6C9 sing 10 n n N C5 6C9 sing 11 n n N1 C5 6C9 sing 12 n n N1 C6 6C9 sing 13 n n C7 C6 6C9 sing 14 n n C5 O1 6C9 doub 15 n n C9 H1 6C9 sing 16 n n C8 H2 6C9 sing 17 n n C7 H3 6C9 sing 18 n n C6 H4 6C9 sing 19 n n N H5 6C9 sing 20 n n C4 H6 6C9 sing 21 n n C4 H7 6C9 sing 22 n n C1 H8 6C9 sing 23 n n C2 H9 6C9 sing 24 n n C2 H10 6C9 sing 25 n n C3 H11 6C9 sing 26 n n C H12 6C9 sing 27 n n C9 H13 6C9 sing 28 n n C8 H14 6C9 sing 29 n n C7 H15 6C9 sing 30 n n C6 H16 6C9 sing 31 n n C3 H17 6C9 sing 32 n n C H18 6C9 sing 33 n n # _atom_sites.entry_id 5IP6 _atom_sites.fract_transf_matrix[1][1] 0.008277 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008277 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029642 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6C9 A 1 301 1 6C9 p98 . C 3 HOH A 1 401 14 HOH HOH . C 3 HOH A 2 402 10 HOH HOH . C 3 HOH A 3 403 6 HOH HOH . C 3 HOH A 4 404 9 HOH HOH . C 3 HOH A 5 405 30 HOH HOH . C 3 HOH A 6 406 16 HOH HOH . C 3 HOH A 7 407 15 HOH HOH . C 3 HOH A 8 408 24 HOH HOH . C 3 HOH A 9 409 17 HOH HOH . C 3 HOH A 10 410 18 HOH HOH . C 3 HOH A 11 411 29 HOH HOH . C 3 HOH A 12 412 1 HOH HOH . C 3 HOH A 13 413 31 HOH HOH . C 3 HOH A 14 414 12 HOH HOH . C 3 HOH A 15 415 27 HOH HOH . C 3 HOH A 16 416 4 HOH HOH . C 3 HOH A 17 417 7 HOH HOH . C 3 HOH A 18 418 21 HOH HOH . C 3 HOH A 19 419 11 HOH HOH . C 3 HOH A 20 420 19 HOH HOH . C 3 HOH A 21 421 3 HOH HOH . C 3 HOH A 22 422 5 HOH HOH . C 3 HOH A 23 423 2 HOH HOH . C 3 HOH A 24 424 28 HOH HOH . C 3 HOH A 25 425 20 HOH HOH . C 3 HOH A 26 426 13 HOH HOH . C 3 HOH A 27 427 8 HOH HOH . C 3 HOH A 28 428 22 HOH HOH . C 3 HOH A 29 429 23 HOH HOH . C 3 HOH A 30 430 25 HOH HOH . C 3 HOH A 31 431 32 HOH HOH . C 3 HOH A 32 432 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 6C9 . . . B 2 27.67 13.644 16.843 1 30 ? O1 6C9 301 A 1 HETATM 2 C C5 6C9 . . . B 2 28.055 13.85 15.704 1 29.87 ? C5 6C9 301 A 1 HETATM 3 N N1 6C9 . . . B 2 28.791 14.918 15.412 1 29.56 ? N1 6C9 301 A 1 HETATM 4 C C9 6C9 . . . B 2 29.054 15.33 14.038 1 29.86 ? C9 6C9 301 A 1 HETATM 5 C C8 6C9 . . . B 2 29.927 16.57 14.182 1 28.73 ? C8 6C9 301 A 1 HETATM 6 C C7 6C9 . . . B 2 30.133 16.833 15.665 1 27.43 ? C7 6C9 301 A 1 HETATM 7 C C6 6C9 . . . B 2 29.389 15.757 16.444 1 26.03 ? C6 6C9 301 A 1 HETATM 8 N N 6C9 . . . B 2 27.753 13.012 14.716 1 25.61 ? N 6C9 301 A 1 HETATM 9 C C4 6C9 . . . B 2 27.386 11.633 14.978 1 22.83 ? C4 6C9 301 A 1 HETATM 10 C C1 6C9 . . . B 2 26.743 11.021 13.74 1 25.75 ? C1 6C9 301 A 1 HETATM 11 C C2 6C9 . . . B 2 27.781 10.906 12.632 1 28.13 ? C2 6C9 301 A 1 HETATM 12 O O 6C9 . . . B 2 27.946 9.522 12.312 1 34.89 ? O 6C9 301 A 1 HETATM 13 C C3 6C9 . . . B 2 27.104 8.69 13.114 1 27.01 ? C3 6C9 301 A 1 HETATM 14 C C 6C9 . . . B 2 26.312 9.596 14.045 1 29.64 ? C 6C9 301 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #