data_5IPF # _model_server_result.job_id 3-Qb6MmajB2aPAi8gB8wfg _model_server_result.datetime_utc '2024-12-01 10:02:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ipf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1300}' # _entry.id 5IPF # _exptl.entry_id 5IPF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IPF _cell.length_a 59.953 _cell.length_b 117.957 _cell.length_c 139.366 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IPF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 173 n n P O2P IMP sing 174 n n P O3P IMP sing 175 n n P O5' IMP sing 176 n n O2P HOP2 IMP sing 177 n n O3P HOP3 IMP sing 178 n n O5' C5' IMP sing 179 n n C5' C4' IMP sing 180 n n C5' "H5'1" IMP sing 181 n n C5' "H5'2" IMP sing 182 n n C4' O4' IMP sing 183 n n C4' C3' IMP sing 184 n n C4' H4' IMP sing 185 n n O4' C1' IMP sing 186 n n C3' O3' IMP sing 187 n n C3' C2' IMP sing 188 n n C3' H3' IMP sing 189 n n O3' HO3' IMP sing 190 n n C2' O2' IMP sing 191 n n C2' C1' IMP sing 192 n n C2' H2' IMP sing 193 n n O2' HO2' IMP sing 194 n n C1' N9 IMP sing 195 n n C1' H1' IMP sing 196 n n N9 C8 IMP sing 197 n y N9 C4 IMP sing 198 n y C8 N7 IMP doub 199 n y C8 H8 IMP sing 200 n n N7 C5 IMP sing 201 n y C5 C6 IMP sing 202 n n C5 C4 IMP doub 203 n y C6 O6 IMP doub 204 n n C6 N1 IMP sing 205 n n N1 C2 IMP sing 206 n n N1 HN1 IMP sing 207 n n C2 N3 IMP doub 208 n n C2 H2 IMP sing 209 n n N3 C4 IMP sing 210 n n # _atom_sites.entry_id 5IPF _atom_sites.fract_transf_matrix[1][1] 0.01668 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008478 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007175 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 IMP A 1 1300 1300 IMP IMP . F 2 IMP B 1 1300 1300 IMP IMP . G 2 IMP C 1 1300 1300 IMP IMP . H 2 IMP D 1 1300 1300 IMP IMP . I 3 HOH A 1 1401 63 HOH HOH . I 3 HOH A 2 1402 48 HOH HOH . I 3 HOH A 3 1403 119 HOH HOH . I 3 HOH A 4 1404 24 HOH HOH . I 3 HOH A 5 1405 68 HOH HOH . I 3 HOH A 6 1406 1 HOH HOH . I 3 HOH A 7 1407 104 HOH HOH . I 3 HOH A 8 1408 2 HOH HOH . I 3 HOH A 9 1409 54 HOH HOH . I 3 HOH A 10 1410 103 HOH HOH . I 3 HOH A 11 1411 30 HOH HOH . I 3 HOH A 12 1412 79 HOH HOH . I 3 HOH A 13 1413 25 HOH HOH . I 3 HOH A 14 1414 55 HOH HOH . I 3 HOH A 15 1415 99 HOH HOH . I 3 HOH A 16 1416 62 HOH HOH . I 3 HOH A 17 1417 85 HOH HOH . I 3 HOH A 18 1418 12 HOH HOH . I 3 HOH A 19 1419 37 HOH HOH . I 3 HOH A 20 1420 117 HOH HOH . I 3 HOH A 21 1421 29 HOH HOH . I 3 HOH A 22 1422 28 HOH HOH . I 3 HOH A 23 1423 19 HOH HOH . I 3 HOH A 24 1424 23 HOH HOH . I 3 HOH A 25 1425 102 HOH HOH . I 3 HOH A 26 1426 13 HOH HOH . I 3 HOH A 27 1427 114 HOH HOH . I 3 HOH A 28 1428 95 HOH HOH . I 3 HOH A 29 1429 118 HOH HOH . I 3 HOH A 30 1430 5 HOH HOH . I 3 HOH A 31 1431 67 HOH HOH . I 3 HOH A 32 1432 107 HOH HOH . I 3 HOH A 33 1433 84 HOH HOH . I 3 HOH A 34 1434 35 HOH HOH . I 3 HOH A 35 1435 100 HOH HOH . I 3 HOH A 36 1436 39 HOH HOH . I 3 HOH A 37 1437 74 HOH HOH . I 3 HOH A 38 1438 27 HOH HOH . J 3 HOH B 1 1401 4 HOH HOH . J 3 HOH B 2 1402 7 HOH HOH . J 3 HOH B 3 1403 21 HOH HOH . J 3 HOH B 4 1404 72 HOH HOH . J 3 HOH B 5 1405 105 HOH HOH . J 3 HOH B 6 1406 20 HOH HOH . J 3 HOH B 7 1407 66 HOH HOH . J 3 HOH B 8 1408 123 HOH HOH . J 3 HOH B 9 1409 3 HOH HOH . J 3 HOH B 10 1410 34 HOH HOH . J 3 HOH B 11 1411 10 HOH HOH . J 3 HOH B 12 1412 97 HOH HOH . J 3 HOH B 13 1413 116 HOH HOH . J 3 HOH B 14 1414 78 HOH HOH . J 3 HOH B 15 1415 14 HOH HOH . J 3 HOH B 16 1416 101 HOH HOH . J 3 HOH B 17 1417 58 HOH HOH . J 3 HOH B 18 1418 113 HOH HOH . J 3 HOH B 19 1419 71 HOH HOH . J 3 HOH B 20 1420 96 HOH HOH . J 3 HOH B 21 1421 41 HOH HOH . J 3 HOH B 22 1422 61 HOH HOH . J 3 HOH B 23 1423 89 HOH HOH . J 3 HOH B 24 1424 120 HOH HOH . J 3 HOH B 25 1425 60 HOH HOH . J 3 HOH B 26 1426 80 HOH HOH . K 3 HOH C 1 1401 83 HOH HOH . K 3 HOH C 2 1402 8 HOH HOH . K 3 HOH C 3 1403 82 HOH HOH . K 3 HOH C 4 1404 33 HOH HOH . K 3 HOH C 5 1405 121 HOH HOH . K 3 HOH C 6 1406 59 HOH HOH . K 3 HOH C 7 1407 77 HOH HOH . K 3 HOH C 8 1408 122 HOH HOH . K 3 HOH C 9 1409 112 HOH HOH . K 3 HOH C 10 1410 76 HOH HOH . K 3 HOH C 11 1411 115 HOH HOH . K 3 HOH C 12 1412 15 HOH HOH . K 3 HOH C 13 1413 64 HOH HOH . K 3 HOH C 14 1414 88 HOH HOH . K 3 HOH C 15 1415 86 HOH HOH . K 3 HOH C 16 1416 75 HOH HOH . K 3 HOH C 17 1417 18 HOH HOH . K 3 HOH C 18 1418 16 HOH HOH . K 3 HOH C 19 1419 98 HOH HOH . K 3 HOH C 20 1420 32 HOH HOH . K 3 HOH C 21 1421 92 HOH HOH . K 3 HOH C 22 1422 106 HOH HOH . K 3 HOH C 23 1423 111 HOH HOH . K 3 HOH C 24 1424 91 HOH HOH . K 3 HOH C 25 1425 38 HOH HOH . K 3 HOH C 26 1426 124 HOH HOH . K 3 HOH C 27 1427 69 HOH HOH . K 3 HOH C 28 1428 11 HOH HOH . L 3 HOH D 1 1401 57 HOH HOH . L 3 HOH D 2 1402 45 HOH HOH . L 3 HOH D 3 1403 53 HOH HOH . L 3 HOH D 4 1404 65 HOH HOH . L 3 HOH D 5 1405 52 HOH HOH . L 3 HOH D 6 1406 108 HOH HOH . L 3 HOH D 7 1407 17 HOH HOH . L 3 HOH D 8 1408 110 HOH HOH . L 3 HOH D 9 1409 73 HOH HOH . L 3 HOH D 10 1410 87 HOH HOH . L 3 HOH D 11 1411 50 HOH HOH . L 3 HOH D 12 1412 49 HOH HOH . L 3 HOH D 13 1413 47 HOH HOH . L 3 HOH D 14 1414 43 HOH HOH . L 3 HOH D 15 1415 90 HOH HOH . L 3 HOH D 16 1416 56 HOH HOH . L 3 HOH D 17 1417 94 HOH HOH . L 3 HOH D 18 1418 46 HOH HOH . L 3 HOH D 19 1419 44 HOH HOH . L 3 HOH D 20 1420 26 HOH HOH . L 3 HOH D 21 1421 81 HOH HOH . L 3 HOH D 22 1422 42 HOH HOH . L 3 HOH D 23 1423 6 HOH HOH . L 3 HOH D 24 1424 22 HOH HOH . L 3 HOH D 25 1425 40 HOH HOH . L 3 HOH D 26 1426 70 HOH HOH . L 3 HOH D 27 1427 51 HOH HOH . L 3 HOH D 28 1428 109 HOH HOH . L 3 HOH D 29 1429 36 HOH HOH . L 3 HOH D 30 1430 9 HOH HOH . L 3 HOH D 31 1431 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . G 2 0.665 -25.019 -25.209 1 102.6 ? P IMP 1300 C 1 HETATM 2 O O1P IMP . . . G 2 -0.024 -24.444 -26.424 1 107.46 -1 O1P IMP 1300 C 1 HETATM 3 O O2P IMP . . . G 2 1.901 -25.861 -25.417 1 96.21 ? O2P IMP 1300 C 1 HETATM 4 O O3P IMP . . . G 2 -0.336 -25.848 -24.44 1 101 ? O3P IMP 1300 C 1 HETATM 5 O O5' IMP . . . G 2 1.11 -23.793 -24.292 1 115.35 ? O5' IMP 1300 C 1 HETATM 6 C C5' IMP . . . G 2 1.825 -24.021 -23.082 1 115.86 ? C5' IMP 1300 C 1 HETATM 7 C C4' IMP . . . G 2 2.527 -22.782 -22.578 1 104.16 ? C4' IMP 1300 C 1 HETATM 8 O O4' IMP . . . G 2 2.982 -21.968 -23.693 1 92.12 ? O4' IMP 1300 C 1 HETATM 9 C C3' IMP . . . G 2 1.696 -21.861 -21.676 1 98.82 ? C3' IMP 1300 C 1 HETATM 10 O O3' IMP . . . G 2 2.465 -21.5 -20.53 1 92.67 ? O3' IMP 1300 C 1 HETATM 11 C C2' IMP . . . G 2 1.465 -20.624 -22.548 1 95.38 ? C2' IMP 1300 C 1 HETATM 12 O O2' IMP . . . G 2 1.314 -19.418 -21.83 1 98.15 ? O2' IMP 1300 C 1 HETATM 13 C C1' IMP . . . G 2 2.721 -20.613 -23.409 1 84.79 ? C1' IMP 1300 C 1 HETATM 14 N N9 IMP . . . G 2 2.573 -19.886 -24.673 1 78.02 ? N9 IMP 1300 C 1 HETATM 15 C C8 IMP . . . G 2 2.035 -20.364 -25.839 1 76.91 ? C8 IMP 1300 C 1 HETATM 16 N N7 IMP . . . G 2 2.085 -19.384 -26.771 1 75.95 ? N7 IMP 1300 C 1 HETATM 17 C C5 IMP . . . G 2 2.647 -18.289 -26.217 1 76.71 ? C5 IMP 1300 C 1 HETATM 18 C C6 IMP . . . G 2 2.932 -17.028 -26.722 1 89.36 ? C6 IMP 1300 C 1 HETATM 19 O O6 IMP . . . G 2 2.76 -16.787 -27.914 1 90.08 ? O6 IMP 1300 C 1 HETATM 20 N N1 IMP . . . G 2 3.524 -16.085 -25.909 1 101.14 ? N1 IMP 1300 C 1 HETATM 21 C C2 IMP . . . G 2 3.826 -16.402 -24.601 1 101.21 ? C2 IMP 1300 C 1 HETATM 22 N N3 IMP . . . G 2 3.541 -17.657 -24.106 1 90.49 ? N3 IMP 1300 C 1 HETATM 23 C C4 IMP . . . G 2 2.96 -18.589 -24.9 1 80.51 ? C4 IMP 1300 C 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 89 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 23 #