data_5IQX # _model_server_result.job_id 12cYnqfMSZIee_6K52GPKA _model_server_result.datetime_utc '2024-11-15 03:25:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5iqx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5IQX # _exptl.entry_id 5IQX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IQX _cell.length_a 34.167 _cell.length_b 47.161 _cell.length_c 101.374 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IQX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 32 A HIS 32 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.053 ? metalc ? metalc2 A NE2 HIS 32 A HIS 32 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.062 ? metalc ? metalc3 A OH TYR 75 A TYR 75 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.076 ? metalc ? metalc4 A OH TYR 75 A TYR 75 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.069 ? metalc ? metalc5 A O THR 76 A THR 76 1_555 E NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc6 A OG SER 79 A SER 79 1_555 E NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc7 A O GLN 171 A GLN 171 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc8 D NA NA . A NA 203 1_555 H O HOH . A HOH 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc9 D NA NA . A NA 203 1_555 H O HOH . A HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc10 D NA NA . A NA 203 1_555 H O HOH . A HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? metalc ? metalc11 E NA NA . A NA 204 1_555 H O HOH . A HOH 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc12 E NA NA . A NA 204 1_555 H O HOH . A HOH 464 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc13 E NA NA . A NA 204 1_555 H O HOH . A HOH 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc14 E NA NA . A NA 204 1_555 H O HOH . A HOH 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc15 F NA NA . A NA 205 1_555 H O HOH . A HOH 363 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.967 ? metalc ? metalc16 F NA NA . A NA 205 1_555 H O HOH . A HOH 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc17 F NA NA . A NA 205 1_555 H O HOH . A HOH 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc18 G NA NA . A NA 206 1_555 H O HOH . A HOH 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc19 G NA NA . A NA 206 1_555 H O HOH . A HOH 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5IQX _atom_sites.fract_transf_matrix[1][1] 0.029268 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021204 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009864 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 1 HEM HEM . C 3 MLT A 1 202 1 MLT MLT . D 4 NA A 1 203 1 NA NA . E 4 NA A 1 204 2 NA NA . F 4 NA A 1 205 3 NA NA . G 4 NA A 1 206 4 NA NA . H 5 HOH A 1 301 171 HOH HOH . H 5 HOH A 2 302 208 HOH HOH . H 5 HOH A 3 303 160 HOH HOH . H 5 HOH A 4 304 165 HOH HOH . H 5 HOH A 5 305 211 HOH HOH . H 5 HOH A 6 306 199 HOH HOH . H 5 HOH A 7 307 200 HOH HOH . H 5 HOH A 8 308 229 HOH HOH . H 5 HOH A 9 309 76 HOH HOH . H 5 HOH A 10 310 215 HOH HOH . H 5 HOH A 11 311 217 HOH HOH . H 5 HOH A 12 312 142 HOH HOH . H 5 HOH A 13 313 111 HOH HOH . H 5 HOH A 14 314 79 HOH HOH . H 5 HOH A 15 315 21 HOH HOH . H 5 HOH A 16 316 193 HOH HOH . H 5 HOH A 17 317 52 HOH HOH . H 5 HOH A 18 318 209 HOH HOH . H 5 HOH A 19 319 168 HOH HOH . H 5 HOH A 20 320 73 HOH HOH . H 5 HOH A 21 321 98 HOH HOH . H 5 HOH A 22 322 203 HOH HOH . H 5 HOH A 23 323 88 HOH HOH . H 5 HOH A 24 324 9 HOH HOH . H 5 HOH A 25 325 189 HOH HOH . H 5 HOH A 26 326 10 HOH HOH . H 5 HOH A 27 327 134 HOH HOH . H 5 HOH A 28 328 32 HOH HOH . H 5 HOH A 29 329 145 HOH HOH . H 5 HOH A 30 330 213 HOH HOH . H 5 HOH A 31 331 196 HOH HOH . H 5 HOH A 32 332 179 HOH HOH . H 5 HOH A 33 333 53 HOH HOH . H 5 HOH A 34 334 68 HOH HOH . H 5 HOH A 35 335 101 HOH HOH . H 5 HOH A 36 336 42 HOH HOH . H 5 HOH A 37 337 90 HOH HOH . H 5 HOH A 38 338 96 HOH HOH . H 5 HOH A 39 339 131 HOH HOH . H 5 HOH A 40 340 30 HOH HOH . H 5 HOH A 41 341 83 HOH HOH . H 5 HOH A 42 342 46 HOH HOH . H 5 HOH A 43 343 107 HOH HOH . H 5 HOH A 44 344 117 HOH HOH . H 5 HOH A 45 345 181 HOH HOH . H 5 HOH A 46 346 69 HOH HOH . H 5 HOH A 47 347 225 HOH HOH . H 5 HOH A 48 348 19 HOH HOH . H 5 HOH A 49 349 150 HOH HOH . H 5 HOH A 50 350 156 HOH HOH . H 5 HOH A 51 351 132 HOH HOH . H 5 HOH A 52 352 161 HOH HOH . H 5 HOH A 53 353 119 HOH HOH . H 5 HOH A 54 354 81 HOH HOH . H 5 HOH A 55 355 104 HOH HOH . H 5 HOH A 56 356 110 HOH HOH . H 5 HOH A 57 357 8 HOH HOH . H 5 HOH A 58 358 3 HOH HOH . H 5 HOH A 59 359 138 HOH HOH . H 5 HOH A 60 360 116 HOH HOH . H 5 HOH A 61 361 206 HOH HOH . H 5 HOH A 62 362 207 HOH HOH . H 5 HOH A 63 363 6 HOH HOH . H 5 HOH A 64 364 39 HOH HOH . H 5 HOH A 65 365 63 HOH HOH . H 5 HOH A 66 366 93 HOH HOH . H 5 HOH A 67 367 55 HOH HOH . H 5 HOH A 68 368 25 HOH HOH . H 5 HOH A 69 369 191 HOH HOH . H 5 HOH A 70 370 56 HOH HOH . H 5 HOH A 71 371 163 HOH HOH . H 5 HOH A 72 372 67 HOH HOH . H 5 HOH A 73 373 126 HOH HOH . H 5 HOH A 74 374 43 HOH HOH . H 5 HOH A 75 375 114 HOH HOH . H 5 HOH A 76 376 133 HOH HOH . H 5 HOH A 77 377 23 HOH HOH . H 5 HOH A 78 378 48 HOH HOH . H 5 HOH A 79 379 154 HOH HOH . H 5 HOH A 80 380 51 HOH HOH . H 5 HOH A 81 381 1 HOH HOH . H 5 HOH A 82 382 12 HOH HOH . H 5 HOH A 83 383 89 HOH HOH . H 5 HOH A 84 384 108 HOH HOH . H 5 HOH A 85 385 202 HOH HOH . H 5 HOH A 86 386 31 HOH HOH . H 5 HOH A 87 387 169 HOH HOH . H 5 HOH A 88 388 214 HOH HOH . H 5 HOH A 89 389 148 HOH HOH . H 5 HOH A 90 390 17 HOH HOH . H 5 HOH A 91 391 29 HOH HOH . H 5 HOH A 92 392 128 HOH HOH . H 5 HOH A 93 393 153 HOH HOH . H 5 HOH A 94 394 94 HOH HOH . H 5 HOH A 95 395 136 HOH HOH . H 5 HOH A 96 396 151 HOH HOH . H 5 HOH A 97 397 70 HOH HOH . H 5 HOH A 98 398 20 HOH HOH . H 5 HOH A 99 399 78 HOH HOH . H 5 HOH A 100 400 44 HOH HOH . H 5 HOH A 101 401 177 HOH HOH . H 5 HOH A 102 402 50 HOH HOH . H 5 HOH A 103 403 62 HOH HOH . H 5 HOH A 104 404 18 HOH HOH . H 5 HOH A 105 405 4 HOH HOH . H 5 HOH A 106 406 175 HOH HOH . H 5 HOH A 107 407 149 HOH HOH . H 5 HOH A 108 408 65 HOH HOH . H 5 HOH A 109 409 221 HOH HOH . H 5 HOH A 110 410 75 HOH HOH . H 5 HOH A 111 411 49 HOH HOH . H 5 HOH A 112 412 186 HOH HOH . H 5 HOH A 113 413 152 HOH HOH . H 5 HOH A 114 414 112 HOH HOH . H 5 HOH A 115 415 91 HOH HOH . H 5 HOH A 116 416 80 HOH HOH . H 5 HOH A 117 417 87 HOH HOH . H 5 HOH A 118 418 135 HOH HOH . H 5 HOH A 119 419 84 HOH HOH . H 5 HOH A 120 420 7 HOH HOH . H 5 HOH A 121 421 164 HOH HOH . H 5 HOH A 122 422 166 HOH HOH . H 5 HOH A 123 423 95 HOH HOH . H 5 HOH A 124 424 24 HOH HOH . H 5 HOH A 125 425 120 HOH HOH . H 5 HOH A 126 426 113 HOH HOH . H 5 HOH A 127 427 27 HOH HOH . H 5 HOH A 128 428 47 HOH HOH . H 5 HOH A 129 429 15 HOH HOH . H 5 HOH A 130 430 170 HOH HOH . H 5 HOH A 131 431 72 HOH HOH . H 5 HOH A 132 432 219 HOH HOH . H 5 HOH A 133 433 115 HOH HOH . H 5 HOH A 134 434 127 HOH HOH . H 5 HOH A 135 435 26 HOH HOH . H 5 HOH A 136 436 13 HOH HOH . H 5 HOH A 137 437 220 HOH HOH . H 5 HOH A 138 438 173 HOH HOH . H 5 HOH A 139 439 38 HOH HOH . H 5 HOH A 140 440 22 HOH HOH . H 5 HOH A 141 441 159 HOH HOH . H 5 HOH A 142 442 141 HOH HOH . H 5 HOH A 143 443 14 HOH HOH . H 5 HOH A 144 444 57 HOH HOH . H 5 HOH A 145 445 58 HOH HOH . H 5 HOH A 146 446 61 HOH HOH . H 5 HOH A 147 447 11 HOH HOH . H 5 HOH A 148 448 82 HOH HOH . H 5 HOH A 149 449 74 HOH HOH . H 5 HOH A 150 450 2 HOH HOH . H 5 HOH A 151 451 137 HOH HOH . H 5 HOH A 152 452 35 HOH HOH . H 5 HOH A 153 453 40 HOH HOH . H 5 HOH A 154 454 5 HOH HOH . H 5 HOH A 155 455 140 HOH HOH . H 5 HOH A 156 456 184 HOH HOH . H 5 HOH A 157 457 118 HOH HOH . H 5 HOH A 158 458 41 HOH HOH . H 5 HOH A 159 459 197 HOH HOH . H 5 HOH A 160 460 216 HOH HOH . H 5 HOH A 161 461 157 HOH HOH . H 5 HOH A 162 462 54 HOH HOH . H 5 HOH A 163 463 162 HOH HOH . H 5 HOH A 164 464 33 HOH HOH . H 5 HOH A 165 465 124 HOH HOH . H 5 HOH A 166 466 86 HOH HOH . H 5 HOH A 167 467 97 HOH HOH . H 5 HOH A 168 468 130 HOH HOH . H 5 HOH A 169 469 16 HOH HOH . H 5 HOH A 170 470 146 HOH HOH . H 5 HOH A 171 471 121 HOH HOH . H 5 HOH A 172 472 45 HOH HOH . H 5 HOH A 173 473 180 HOH HOH . H 5 HOH A 174 474 224 HOH HOH . H 5 HOH A 175 475 106 HOH HOH . H 5 HOH A 176 476 227 HOH HOH . H 5 HOH A 177 477 102 HOH HOH . H 5 HOH A 178 478 192 HOH HOH . H 5 HOH A 179 479 201 HOH HOH . H 5 HOH A 180 480 85 HOH HOH . H 5 HOH A 181 481 230 HOH HOH . H 5 HOH A 182 482 223 HOH HOH . H 5 HOH A 183 483 212 HOH HOH . H 5 HOH A 184 484 92 HOH HOH . H 5 HOH A 185 485 178 HOH HOH . H 5 HOH A 186 486 123 HOH HOH . H 5 HOH A 187 487 187 HOH HOH . H 5 HOH A 188 488 34 HOH HOH . H 5 HOH A 189 489 103 HOH HOH . H 5 HOH A 190 490 37 HOH HOH . H 5 HOH A 191 491 194 HOH HOH . H 5 HOH A 192 492 64 HOH HOH . H 5 HOH A 193 493 174 HOH HOH . H 5 HOH A 194 494 66 HOH HOH . H 5 HOH A 195 495 147 HOH HOH . H 5 HOH A 196 496 155 HOH HOH . H 5 HOH A 197 497 77 HOH HOH . H 5 HOH A 198 498 109 HOH HOH . H 5 HOH A 199 499 129 HOH HOH . H 5 HOH A 200 500 205 HOH HOH . H 5 HOH A 201 501 125 HOH HOH . H 5 HOH A 202 502 204 HOH HOH . H 5 HOH A 203 503 100 HOH HOH . H 5 HOH A 204 504 99 HOH HOH . H 5 HOH A 205 505 198 HOH HOH . H 5 HOH A 206 506 182 HOH HOH . H 5 HOH A 207 507 59 HOH HOH . H 5 HOH A 208 508 188 HOH HOH . H 5 HOH A 209 509 183 HOH HOH . H 5 HOH A 210 510 105 HOH HOH . H 5 HOH A 211 511 144 HOH HOH . H 5 HOH A 212 512 28 HOH HOH . H 5 HOH A 213 513 122 HOH HOH . H 5 HOH A 214 514 36 HOH HOH . H 5 HOH A 215 515 228 HOH HOH . H 5 HOH A 216 516 195 HOH HOH . H 5 HOH A 217 517 218 HOH HOH . H 5 HOH A 218 518 172 HOH HOH . H 5 HOH A 219 519 226 HOH HOH . H 5 HOH A 220 520 176 HOH HOH . H 5 HOH A 221 521 167 HOH HOH . H 5 HOH A 222 522 222 HOH HOH . H 5 HOH A 223 523 71 HOH HOH . H 5 HOH A 224 524 143 HOH HOH . H 5 HOH A 225 525 185 HOH HOH . H 5 HOH A 226 526 210 HOH HOH . H 5 HOH A 227 527 158 HOH HOH . H 5 HOH A 228 528 190 HOH HOH . H 5 HOH A 229 529 60 HOH HOH . H 5 HOH A 230 530 139 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 41.075 _atom_site.Cartn_y 30.292 _atom_site.Cartn_z 3.259 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 19.86 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #