data_5IRV
#
_model_server_result.job_id            2TV66C_ximZPeNBPhWP-fg 
_model_server_result.datetime_utc      '2024-10-16 00:24:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5irv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":600}' 
#
_entry.id    5IRV 
#
_exptl.entry_id    5IRV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5IRV 
_cell.length_a            90.954 
_cell.length_b            153.499 
_cell.length_c            169.035 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5IRV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F 1 1 
B,G,H 2 1 
C,I,J 3 1 
D,K,L 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E FE HEM . A HEM 600 1_555 F N27 6D8 . A 6D8 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc2 G FE HEM . B HEM 600 1_555 H N26 6D8 . B 6D8 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? 
metalc ? metalc3 G FE HEM . B HEM 600 1_555 H N27 6D8 . B 6D8 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc4 I FE HEM . C HEM 600 1_555 J N27 6D8 . C 6D8 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? 
metalc ? metalc5 K FE HEM . D HEM 600 1_555 L N26 6D8 . D 6D8 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? 
metalc ? metalc6 K FE HEM . D HEM 600 1_555 L N27 6D8 . D 6D8 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 176 n n 
CHA C4D HEM doub 177 n n 
CHA HHA HEM sing 178 n n 
CHB C4A HEM sing 179 n n 
CHB C1B HEM doub 180 n n 
CHB HHB HEM sing 181 n n 
CHC C4B HEM sing 182 n n 
CHC C1C HEM doub 183 n n 
CHC HHC HEM sing 184 n n 
CHD C4C HEM doub 185 n n 
CHD C1D HEM sing 186 n n 
CHD HHD HEM sing 187 n n 
C1A C2A HEM doub 188 n y 
C1A NA HEM sing 189 n y 
C2A C3A HEM sing 190 n y 
C2A CAA HEM sing 191 n n 
C3A C4A HEM doub 192 n y 
C3A CMA HEM sing 193 n n 
C4A NA HEM sing 194 n y 
CMA HMA HEM sing 195 n n 
CMA HMAA HEM sing 196 n n 
CMA HMAB HEM sing 197 n n 
CAA CBA HEM sing 198 n n 
CAA HAA HEM sing 199 n n 
CAA HAAA HEM sing 200 n n 
CBA CGA HEM sing 201 n n 
CBA HBA HEM sing 202 n n 
CBA HBAA HEM sing 203 n n 
CGA O1A HEM doub 204 n n 
CGA O2A HEM sing 205 n n 
C1B C2B HEM sing 206 n n 
C1B NB HEM sing 207 n n 
C2B C3B HEM doub 208 n n 
C2B CMB HEM sing 209 n n 
C3B C4B HEM sing 210 n n 
C3B CAB HEM sing 211 n n 
C4B NB HEM doub 212 n n 
CMB HMB HEM sing 213 n n 
CMB HMBA HEM sing 214 n n 
CMB HMBB HEM sing 215 n n 
CAB CBB HEM doub 216 n n 
CAB HAB HEM sing 217 n n 
CBB HBB HEM sing 218 n n 
CBB HBBA HEM sing 219 n n 
C1C C2C HEM sing 220 n y 
C1C NC HEM sing 221 n y 
C2C C3C HEM doub 222 n y 
C2C CMC HEM sing 223 n n 
C3C C4C HEM sing 224 n y 
C3C CAC HEM sing 225 n n 
C4C NC HEM sing 226 n y 
CMC HMC HEM sing 227 n n 
CMC HMCA HEM sing 228 n n 
CMC HMCB HEM sing 229 n n 
CAC CBC HEM doub 230 n n 
CAC HAC HEM sing 231 n n 
CBC HBC HEM sing 232 n n 
CBC HBCA HEM sing 233 n n 
C1D C2D HEM sing 234 n n 
C1D ND HEM doub 235 n n 
C2D C3D HEM doub 236 n n 
C2D CMD HEM sing 237 n n 
C3D C4D HEM sing 238 n n 
C3D CAD HEM sing 239 n n 
C4D ND HEM sing 240 n n 
CMD HMD HEM sing 241 n n 
CMD HMDA HEM sing 242 n n 
CMD HMDB HEM sing 243 n n 
CAD CBD HEM sing 244 n n 
CAD HAD HEM sing 245 n n 
CAD HADA HEM sing 246 n n 
CBD CGD HEM sing 247 n n 
CBD HBD HEM sing 248 n n 
CBD HBDA HEM sing 249 n n 
CGD O1D HEM doub 250 n n 
CGD O2D HEM sing 251 n n 
O2A H2A HEM sing 252 n n 
O2D H2D HEM sing 253 n n 
FE NA HEM sing 254 n n 
FE NB HEM sing 255 n n 
FE NC HEM sing 256 n n 
FE ND HEM sing 257 n n 
#
_atom_sites.entry_id                     5IRV 
_atom_sites.fract_transf_matrix[1][1]    0.010995 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006515 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005916 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 600 600 HEM HEM . 
F 3 6D8 A 1 601 601 6D8 LIG . 
G 2 HEM B 1 600 600 HEM HEM . 
H 3 6D8 B 1 601 601 6D8 LIG . 
I 2 HEM C 1 600 600 HEM HEM . 
J 3 6D8 C 1 601 601 6D8 LIG . 
K 2 HEM D 1 600 600 HEM HEM . 
L 3 6D8 D 1 601 601 6D8 LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . G 2 16.311 -164.967 46.941 1 44.63 ? CHA HEM 600 B 1 
HETATM 2 C CHB HEM . . . G 2 18.668 -164.458 42.743 1 44.41 ? CHB HEM 600 B 1 
HETATM 3 C CHC HEM . . . G 2 14.906 -161.943 41.042 1 54.14 ? CHC HEM 600 B 1 
HETATM 4 C CHD HEM . . . G 2 12.493 -162.509 45.202 1 48.31 ? CHD HEM 600 B 1 
HETATM 5 C C1A HEM . . . G 2 17.297 -165 45.982 1 43.81 ? C1A HEM 600 B 1 
HETATM 6 C C2A HEM . . . G 2 18.644 -165.509 46.155 1 46.38 ? C2A HEM 600 B 1 
HETATM 7 C C3A HEM . . . G 2 19.294 -165.364 44.997 1 44.98 ? C3A HEM 600 B 1 
HETATM 8 C C4A HEM . . . G 2 18.381 -164.768 44.05 1 41.57 ? C4A HEM 600 B 1 
HETATM 9 C CMA HEM . . . G 2 20.752 -165.762 44.679 1 47.78 ? CMA HEM 600 B 1 
HETATM 10 C CAA HEM . . . G 2 19.205 -166.093 47.471 1 49.05 ? CAA HEM 600 B 1 
HETATM 11 C CBA HEM . . . G 2 19.639 -167.54 47.285 1 51.15 ? CBA HEM 600 B 1 
HETATM 12 C CGA HEM . . . G 2 20.088 -168.071 48.617 1 47.21 ? CGA HEM 600 B 1 
HETATM 13 O O1A HEM . . . G 2 20.181 -167.265 49.577 1 33.37 ? O1A HEM 600 B 1 
HETATM 14 O O2A HEM . . . G 2 20.352 -169.295 48.717 1 62.17 ? O2A HEM 600 B 1 
HETATM 15 C C1B HEM . . . G 2 17.84 -163.748 41.909 1 45.62 ? C1B HEM 600 B 1 
HETATM 16 C C2B HEM . . . G 2 18.109 -163.419 40.524 1 41.42 ? C2B HEM 600 B 1 
HETATM 17 C C3B HEM . . . G 2 17.073 -162.693 40.072 1 43.8 ? C3B HEM 600 B 1 
HETATM 18 C C4B HEM . . . G 2 16.111 -162.593 41.141 1 48.93 ? C4B HEM 600 B 1 
HETATM 19 C CMB HEM . . . G 2 19.42 -163.835 39.817 1 45.93 ? CMB HEM 600 B 1 
HETATM 20 C CAB HEM . . . G 2 16.766 -162.093 38.682 1 48.22 ? CAB HEM 600 B 1 
HETATM 21 C CBB HEM . . . G 2 17.44 -162.406 37.574 1 57.24 ? CBB HEM 600 B 1 
HETATM 22 C C1C HEM . . . G 2 13.907 -161.932 41.981 1 46.85 ? C1C HEM 600 B 1 
HETATM 23 C C2C HEM . . . G 2 12.569 -161.443 41.759 1 45.36 ? C2C HEM 600 B 1 
HETATM 24 C C3C HEM . . . G 2 11.881 -161.586 42.891 1 40.97 ? C3C HEM 600 B 1 
HETATM 25 C C4C HEM . . . G 2 12.768 -162.178 43.889 1 42.39 ? C4C HEM 600 B 1 
HETATM 26 C CMC HEM . . . G 2 12.051 -160.856 40.427 1 54.13 ? CMC HEM 600 B 1 
HETATM 27 C CAC HEM . . . G 2 10.403 -161.157 43.034 1 46.81 ? CAC HEM 600 B 1 
HETATM 28 C CBC HEM . . . G 2 9.601 -161.669 43.966 1 54.92 ? CBC HEM 600 B 1 
HETATM 29 C C1D HEM . . . G 2 13.332 -163.203 46.052 1 50.64 ? C1D HEM 600 B 1 
HETATM 30 C C2D HEM . . . G 2 13.078 -163.517 47.448 1 44.41 ? C2D HEM 600 B 1 
HETATM 31 C C3D HEM . . . G 2 14.132 -164.197 47.918 1 39.06 ? C3D HEM 600 B 1 
HETATM 32 C C4D HEM . . . G 2 15.094 -164.33 46.844 1 42.06 ? C4D HEM 600 B 1 
HETATM 33 C CMD HEM . . . G 2 11.798 -163.14 48.226 1 44.09 ? CMD HEM 600 B 1 
HETATM 34 C CAD HEM . . . G 2 14.356 -164.765 49.34 1 51.8 ? CAD HEM 600 B 1 
HETATM 35 C CBD HEM . . . G 2 13.896 -166.221 49.382 1 55 ? CBD HEM 600 B 1 
HETATM 36 C CGD HEM . . . G 2 14.157 -166.839 50.731 1 50.69 ? CGD HEM 600 B 1 
HETATM 37 O O1D HEM . . . G 2 13.467 -167.833 51.071 1 53.33 ? O1D HEM 600 B 1 
HETATM 38 O O2D HEM . . . G 2 15.044 -166.338 51.469 1 46.62 ? O2D HEM 600 B 1 
HETATM 39 N NA HEM . . . G 2 17.17 -164.558 44.681 1 39.5 ? NA HEM 600 B 1 
HETATM 40 N NB HEM . . . G 2 16.611 -163.228 42.254 1 43.18 ? NB HEM 600 B 1 
HETATM 41 N NC HEM . . . G 2 13.995 -162.377 43.284 1 44.16 ? NC HEM 600 B 1 
HETATM 42 N ND HEM . . . G 2 14.575 -163.712 45.725 1 42.78 ? ND HEM 600 B 1 
HETATM 43 FE FE HEM . . . G 2 15.626 -163.409 44.019 1 39.59 ? FE HEM 600 B 1 
HETATM 44 H HHB HEM . . . G 2 19.415 -164.936 42.326 1 53.29 ? HHB HEM 600 B 1 
HETATM 45 H HHC HEM . . . G 2 14.744 -161.436 40.219 1 64.97 ? HHC HEM 600 B 1 
HETATM 46 H HHD HEM . . . G 2 11.594 -162.304 45.534 1 57.97 ? HHD HEM 600 B 1 
HETATM 47 H HMA HEM . . . G 2 21.36 -165.276 45.273 1 57.33 ? HMA HEM 600 B 1 
HETATM 48 H HMAA HEM . . . G 2 20.956 -165.536 43.747 1 57.33 ? HMAA HEM 600 B 1 
HETATM 49 H HMAB HEM . . . G 2 20.864 -166.726 44.813 1 57.33 ? HMAB HEM 600 B 1 
HETATM 50 H HAA HEM . . . G 2 18.519 -166.051 48.155 1 58.86 ? HAA HEM 600 B 1 
HETATM 51 H HAAA HEM . . . G 2 19.969 -165.565 47.752 1 58.86 ? HAAA HEM 600 B 1 
HETATM 52 H HBA HEM . . . G 2 20.371 -167.583 46.651 1 61.38 ? HBA HEM 600 B 1 
HETATM 53 H HBAA HEM . . . G 2 18.892 -168.066 46.958 1 61.38 ? HBAA HEM 600 B 1 
HETATM 54 H HMB HEM . . . G 2 20.176 -163.443 40.281 1 55.11 ? HMB HEM 600 B 1 
HETATM 55 H HMBA HEM . . . G 2 19.405 -163.522 38.899 1 55.11 ? HMBA HEM 600 B 1 
HETATM 56 H HMBB HEM . . . G 2 19.5 -164.802 39.827 1 55.11 ? HMBB HEM 600 B 1 
HETATM 57 H HAB HEM . . . G 2 16.05 -161.458 38.611 1 57.86 ? HAB HEM 600 B 1 
HETATM 58 H HBB HEM . . . G 2 17.198 -161.999 36.728 1 68.68 ? HBB HEM 600 B 1 
HETATM 59 H HBBA HEM . . . G 2 18.169 -163.045 37.615 1 68.68 ? HBBA HEM 600 B 1 
HETATM 60 H HMC HEM . . . G 2 11.121 -160.597 40.527 1 64.96 ? HMC HEM 600 B 1 
HETATM 61 H HMCA HEM . . . G 2 12.127 -161.523 39.727 1 64.96 ? HMCA HEM 600 B 1 
HETATM 62 H HMCB HEM . . . G 2 12.579 -160.077 40.189 1 64.96 ? HMCB HEM 600 B 1 
HETATM 63 H HAC HEM . . . G 2 10.051 -160.5 42.43 1 56.18 ? HAC HEM 600 B 1 
HETATM 64 H HBC HEM . . . G 2 8.677 -161.38 44.023 1 65.91 ? HBC HEM 600 B 1 
HETATM 65 H HBCA HEM . . . G 2 9.94 -162.335 44.585 1 65.91 ? HBCA HEM 600 B 1 
HETATM 66 H HMD HEM . . . G 2 11.869 -163.463 49.148 1 52.91 ? HMD HEM 600 B 1 
HETATM 67 H HMDA HEM . . . G 2 11.02 -163.552 47.794 1 52.91 ? HMDA HEM 600 B 1 
HETATM 68 H HMDB HEM . . . G 2 11.692 -162.166 48.228 1 52.91 ? HMDB HEM 600 B 1 
HETATM 69 H HAD HEM . . . G 2 13.846 -164.245 49.98 1 62.16 ? HAD HEM 600 B 1 
HETATM 70 H HADA HEM . . . G 2 15.299 -164.717 49.562 1 62.16 ? HADA HEM 600 B 1 
HETATM 71 H HBD HEM . . . G 2 14.374 -166.725 48.705 1 66 ? HBD HEM 600 B 1 
HETATM 72 H HBDA HEM . . . G 2 12.945 -166.259 49.194 1 66 ? HBDA HEM 600 B 1 
HETATM 73 H HHA HEM . . . G 2 16.493 -165.444 47.777 1 53.56 ? HHA HEM 600 B 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    37 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           73 
#